Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023421.1

Orthogroup ID

OG0014499

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5375

Gene Structure 5375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023421.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 748 bp

gttgagcgatgcggcagcagatgcagtgaagcaattgcttcccaagtatgcagaaaatgacttggggactgtgtgcatatgggccgatcgtgtcaagtttcggtatcactggtcatctgcccttcactacattgacactcctgacaacctttgcacttatcagtacaatagggactgcaaggacgaaaatggagacaaggggcgttgtgttgcaggggccataaacaattacaccactcagcttctcacttacagctccggttcttccaagtcggaatataacctcactgaagcactgttattcctttctcattttttcggagacatccatcagcctctacatgtgggtttcacttcagacagggggggcaataccattgaagttcactggtacaccaggaagcaaaatcttcaccatatatgggatagcaacataatcgaaacagcagaagagaggttctacgagaataatctggatgagctggttgatgcgattaaacagaacattacgactgaatgggcagatgaagttaaggcttgggagacctgcagtttgaacaagacagcatgcccagatgtatatgcatctgaaggtatcaaagcagcttgtgattgggcttacaagggtgtagacgaaggctcagtcttacaagatccatacttcctctcccggttacctatcgtcaataggcggttggctcaaggtggagtccggttagcagccactctcaaccggatcttcggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0006139 GO:0006259 GO:0006308 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1-P1_nuclease

Protein Analysis

248

Amino Acids

28.11

Weight (kDa)

5.24

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68290
fragaria_vesca	FvH4_4g27190
malus_domestica	MD13G1040300.v1.1 MD16G1041300.v1.1
prunus_persica	Prupe.1G312700_v2.0.a1
pyrus_communis	pycom16g03580
rosa_chinensis	RchiOBHm_Chr4g0434991
rosa_laevigata	RLG00000006631
rosa_multiflora	Rmu_sc0000400.1_g000035 Rmu_sc0023421.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376160
rosa_rugosa	Rorug04G0281500 Rorug04G0281500
rosa_samantha	Rh4AG336900 Rh4BG344800 Rh4DG339300
rosa_wichuraiana	Rw4G029370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	631
AciI	CCGC	2 cut(s)	12, 692
AclWI	GGATC	2 cut(s)	648, 744
AcuI	CTGAAG	3 cut(s)	310, 340, 610
AfaI	GTAC	2 cut(s)	165, 393
AfiI	CCNNNNNNNGG	1 cut(s)	422
AflIII	ACRYGT	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	381, 557
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	4 cut(s)	242, 256, 482, 606
AluI	AGCT	4 cut(s)	242, 256, 482, 606
Alw26I	GTCTC	3 cut(s)	187, 316, 537
AlwI	GGATC	2 cut(s)	648, 744
AoxI	GGCC	2 cut(s)	82, 217
ApeKI	GCWGC	3 cut(s)	15, 603, 720
ArsI	GACNNNNNNTTYG	4 cut(s)	536, 568, 628, 660
AspS9I	GGNCC	2 cut(s)	82, 217
AsuC2I	CCSGG	1 cut(s)	671
AsuHPI	GGTGA	1 cut(s)	405
BbvI	GCAGC	3 cut(s)	27, 615, 732
BccI	CCATC	1 cut(s)	337
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	1 cut(s)	398
BcnI	CCSGG	1 cut(s)	671
BcoDI	GTCTC	3 cut(s)	187, 316, 537
BfmI	CTRYAG	1 cut(s)	548
BfuAI	ACCTGC	1 cut(s)	555
BisI	GCNGC	4 cut(s)	13, 16, 604, 721
BlsI	GCNGC	4 cut(s)	14, 17, 605, 722
Bme1390I	CCNGG	2 cut(s)	398, 671
BmgT120I	GGNCC	2 cut(s)	82, 217
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	398, 671
BmsI	GCATC	3 cut(s)	11, 479, 594
BpuEI	CTTGAG	1 cut(s)	685
BpuMI	CCSGG	1 cut(s)	671
BsaI	GGTCTC	1 cut(s)	537
BsaWI	WCCGGW	3 cut(s)	258, 712, 733
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse1I	ACTGG	2 cut(s)	114, 393
BseBI	CCWGG	1 cut(s)	398
BseGI	GGATG	2 cut(s)	325, 482
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMII	CTCAG	2 cut(s)	252, 655
BseNI	ACTGG	2 cut(s)	114, 393
BseXI	GCAGC	3 cut(s)	27, 615, 732
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	2 cut(s)	84, 219
BsiEI	CGRYCG	1 cut(s)	89
BsiSI	CCGG	4 cut(s)	259, 671, 713, 734
BslFI	GGGAC	2 cut(s)	80, 186
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	3 cut(s)	187, 316, 537
BsmFI	GGGAC	2 cut(s)	80, 186
BsnI	GGCC	2 cut(s)	84, 219
Bso31I	GGTCTC	1 cut(s)	537
Bsp143I	GATC	3 cut(s)	86, 653, 736
BspACI	CCGC	2 cut(s)	12, 692
BspANI	GGCC	2 cut(s)	84, 219
BspCNI	CTCAG	2 cut(s)	251, 654
BspLI	GGNNCC	1 cut(s)	218
BspMAI	CTGCAG	1 cut(s)	552
BspMI	ACCTGC	1 cut(s)	555
BspPI	GGATC	2 cut(s)	648, 744
BspTNI	GGTCTC	1 cut(s)	537
BsrI	ACTGG	2 cut(s)	114, 393
BssMI	GATC	3 cut(s)	86, 653, 736
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	2 cut(s)	71, 298
Bst6I	CTCTTC	1 cut(s)	445
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	569
BstDEI	CTNAG	2 cut(s)	238, 641
BstEII	GGTNACC	1 cut(s)	673
BstF5I	GGATG	2 cut(s)	325, 482
BstKTI	GATC	3 cut(s)	89, 656, 739
BstMAI	GTCTC	3 cut(s)	187, 316, 537
BstMBI	GATC	3 cut(s)	86, 653, 736
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	398
BstNSI	RCATGY	2 cut(s)	345, 571
BstPI	GGTNACC	1 cut(s)	673
BstSCI	CCNGG	2 cut(s)	396, 669
BstSFI	CTRYAG	1 cut(s)	548
BstV1I	GCAGC	3 cut(s)	27, 615, 732
BstX2I	RGATCY	2 cut(s)	653, 736
BstYI	RGATCY	2 cut(s)	653, 736
BsuRI	GGCC	2 cut(s)	84, 219
BtgZI	GCGATG	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	325, 482
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	5 cut(s)	31, 107, 286, 294, 386
BveI	ACCTGC	1 cut(s)	555
Cac8I	GCNNGC	1 cut(s)	569
Cfr13I	GGNCC	2 cut(s)	82, 217
Csp6I	GTAC	2 cut(s)	164, 392
CviAII	CATG	2 cut(s)	342, 568
CviQI	GTAC	2 cut(s)	164, 392
DdeI	CTNAG	2 cut(s)	238, 641
DpnI	GATC	3 cut(s)	88, 655, 738
DpnII	GATC	3 cut(s)	86, 653, 736
Eam1104I	CTCTTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	445
Eco31I	GGTCTC	1 cut(s)	537
Eco57I	CTGAAG	3 cut(s)	310, 340, 610
Eco91I	GGTNACC	1 cut(s)	673
EcoO65I	GGTNACC	1 cut(s)	673
EcoRII	CCWGG	1 cut(s)	396
EcoT22I	ATGCAT	1 cut(s)	587
FaeI	CATG	2 cut(s)	345, 571
FaqI	GGGAC	2 cut(s)	80, 186
FatI	CATG	2 cut(s)	341, 567
FauNDI	CATATG	1 cut(s)	78
FblI	GTMKAC	1 cut(s)	631
Fnu4HI	GCNGC	4 cut(s)	13, 16, 604, 721
FokI	GGATG	2 cut(s)	312, 489
Fsp4HI	GCNGC	4 cut(s)	13, 16, 604, 721
GluI	GCNGC	4 cut(s)	13, 16, 604, 721
HaeIII	GGCC	2 cut(s)	84, 219
HapII	CCGG	4 cut(s)	259, 671, 713, 734
Hin1II	CATG	2 cut(s)	345, 571
HinfI	GANTC	1 cut(s)	709
HpaII	CCGG	4 cut(s)	259, 671, 713, 734
HphI	GGTGA	1 cut(s)	405
Hpy166II	GTNNAC	3 cut(s)	386, 394, 632
Hpy188I	TCNGA	4 cut(s)	275, 321, 359, 590
Hpy188III	TCNNGA	2 cut(s)	141, 474
Hpy8I	GTNNAC	3 cut(s)	386, 394, 632
HpyAV	CCTTC	3 cut(s)	132, 585, 630
HpyCH4III	ACNGT	2 cut(s)	71, 298
HpyCH4V	TGCA	8 cut(s)	24, 51, 76, 154, 178, 213, 550, 585
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	2 cut(s)	238, 641
Hsp92II	CATG	2 cut(s)	345, 571
Kzo9I	GATC	3 cut(s)	86, 653, 736
LmnI	GCTCC	1 cut(s)	261
Lsp1109I	GCAGC	3 cut(s)	27, 615, 732
LweI	GCATC	3 cut(s)	11, 479, 594
MaeIII	GTNAC	1 cut(s)	673
MalI	GATC	3 cut(s)	88, 655, 738
MboI	GATC	3 cut(s)	86, 653, 736
MboII	GAAGA	4 cut(s)	256, 402, 462, 731
MfeI	CAATTG	1 cut(s)	33
MflI	RGATCY	2 cut(s)	653, 736
MluCI	AATT	2 cut(s)	33, 227
MlyI	GAGTC	1 cut(s)	718
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	4 cut(s)	294, 346, 448, 675
Mph1103I	ATGCAT	1 cut(s)	587
MseI	TTAA	2 cut(s)	496, 532
MspI	CCGG	4 cut(s)	259, 671, 713, 734
MspR9I	CCNGG	2 cut(s)	398, 671
MunI	CAATTG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	21
NciI	CCSGG	1 cut(s)	671
NdeI	CATATG	1 cut(s)	78
NdeII	GATC	3 cut(s)	86, 653, 736
NlaIII	CATG	2 cut(s)	345, 571
NlaIV	GGNNCC	1 cut(s)	218
NsiI	ATGCAT	1 cut(s)	587
NspI	RCATGY	2 cut(s)	345, 571
PaeI	GCATGC	1 cut(s)	571
PciI	ACATGT	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	14, 17, 605, 722
Ple19I	CGATCG	1 cut(s)	89
PleI	GAGTC	1 cut(s)	717
PpsI	GAGTC	1 cut(s)	717
PscI	ACATGT	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	396
PspEI	GGTNACC	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	2 cut(s)	82, 217
PstI	CTGCAG	1 cut(s)	552
PsuI	RGATCY	2 cut(s)	653, 736
PvuI	CGATCG	1 cut(s)	89
RsaI	GTAC	2 cut(s)	165, 393
RsaNI	GTAC	2 cut(s)	164, 392
SaqAI	TTAA	2 cut(s)	496, 532
SatI	GCNGC	4 cut(s)	13, 16, 604, 721
Sau3AI	GATC	3 cut(s)	86, 653, 736
Sau96I	GGNCC	2 cut(s)	82, 217
SchI	GAGTC	1 cut(s)	718
ScrFI	CCNGG	2 cut(s)	398, 671
SfaNI	GCATC	3 cut(s)	11, 479, 594
SfcI	CTRYAG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
SphI	GCATGC	1 cut(s)	571
Sse9I	AATT	2 cut(s)	33, 227
SsiI	CCGC	2 cut(s)	12, 692
StyD4I	CCNGG	2 cut(s)	396, 669
TaaI	ACNGT	2 cut(s)	71, 298
TaqI	TCGA	1 cut(s)	439
TasI	AATT	2 cut(s)	33, 227
TatI	WGTACW	1 cut(s)	163
TauI	GCSGC	1 cut(s)	15
Tru1I	TTAA	2 cut(s)	496, 532
Tru9I	TTAA	2 cut(s)	496, 532
TscAI	CASTG	5 cut(s)	31, 114, 293, 301, 393
TseI	GCWGC	3 cut(s)	15, 603, 720
TspDTI	ATGAA	1 cut(s)	541
TspRI	CASTG	5 cut(s)	31, 114, 293, 301, 393
XceI	RCATGY	2 cut(s)	345, 571
XmiI	GTMKAC	1 cut(s)	631
Zsp2I	ATGCAT	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.