Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014499

Physical Location & Seq

Genomic Coordinates Reverse (-)

56897948 .. 56900017

Gene Structure 2070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00376160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAAAGTGGCAGCCTGGTCCGGATAGTTCGTTTGTGTTCACCGCTTCTTCTTCTTCTTCTTCTTTTTCCTGTGATTCATGGTTGGGGTATCGAGGGTCACACGACGGTGTGTAGAATTGCTCAGTCTAGGTTGAGCGATGCGGCAGCAGATGCAGTGAAGCAATTACTTCCCAAGTATGCAGAAAATGACTTGGGGACTGTGTGCATATGGGCCGATCGTGTCAAGTTTCGGTATCACTGGTCATCTGCCCTTCACTACATTGACACTCCTGACAACCTTTGCACTTACCAGTACAATAGGGACTGCAAGGACGAAAATGGAGACAAGGGGCGTTGTGTTGCAGGGGCCATAAACAATTACACCACTCAGCTTCTCACTTACAGCTCCGGTTCTTCCAAGTCGGCATACAGGGGGGCCAATACCATTGAAGTTCACTGGTACACCAGGAAGCAAAATCTTCACCATATATGGGATAGCAACATAATCGAAACAGCAGAAGAGAGGTTCTACGAGAATAATCTGGATGAGCTGGTTGATGCGATTAAACAGAACATTACGACTGAATGGGCAGCTGAAGTTAAGGCTTGGGAGACCTGCAGTTTGAACAAGACAGCCTGCCCAGATGTATATGCATCTGAAGGTATCAAAGCAGCTTGTGATTGGGCTTACAAGGGTGTAGACGAAGGCTCAGTCTTACAAGATCCATACTTCCTCTCCCGGTTACCTATCGTCAATAGGCGGTTGGCTCAAGGTGGAGTCCGGTTAGCAGCCACGCTCAACCGGATCTTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0006139 GO:0006259 GO:0006308 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1-P1_nuclease

Protein Analysis

265

Amino Acids

29.86

Weight (kDa)

6.17

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1-P1_nuclease	PF02265	29 - 133	1.3e-27	S1/P1 Nuclease
S1-P1_nuclease	PF02265	137 - 264	2.3e-34	S1/P1 Nuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68290
fragaria_vesca	FvH4_4g27190
malus_domestica	MD13G1040300.v1.1 MD16G1041300.v1.1
prunus_persica	Prupe.1G312700_v2.0.a1
pyrus_communis	pycom16g03580
rosa_chinensis	RchiOBHm_Chr4g0434991
rosa_laevigata	RLG00000006631
rosa_multiflora	Rmu_sc0000400.1_g000035 Rmu_sc0023421.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376160
rosa_rugosa	Rorug04G0281500 Rorug04G0281500
rosa_samantha	Rh4AG336900 Rh4BG344800 Rh4DG339300
rosa_wichuraiana	Rw4G029370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	605
AccI	GTMKAC	1 cut(s)	681
AccIII	TCCGGA	1 cut(s)	21
AciI	CCGC	3 cut(s)	44, 143, 742
AclWI	GGATC	2 cut(s)	698, 794
AcuI	CTGAAG	2 cut(s)	597, 660
AfaI	GTAC	2 cut(s)	296, 443
AfiI	CCNNNNNNNGG	1 cut(s)	472
AgsI	TTSAA	2 cut(s)	431, 607
AjnI	CCWGG	2 cut(s)	15, 446
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	5 cut(s)	373, 387, 532, 575, 656
AluI	AGCT	5 cut(s)	373, 387, 532, 575, 656
Alw26I	GTCTC	2 cut(s)	318, 587
AlwI	GGATC	2 cut(s)	698, 794
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	3 cut(s)	213, 348, 417
ApeKI	GCWGC	5 cut(s)	12, 146, 572, 653, 770
ArsI	GACNNNNNNTTYG	4 cut(s)	586, 618, 678, 710
AspS9I	GGNCC	4 cut(s)	19, 213, 348, 417
AsuC2I	CCSGG	1 cut(s)	721
AsuHPI	GGTGA	2 cut(s)	33, 455
AvaII	GGWCC	1 cut(s)	19
BbvI	GCAGC	5 cut(s)	24, 158, 584, 665, 782
BcgI	CGANNNNNNTGC	2 cut(s)	469, 503
BciT130I	CCWGG	2 cut(s)	17, 448
BcnI	CCSGG	1 cut(s)	721
BcoDI	GTCTC	2 cut(s)	318, 587
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	598
BfuAI	ACCTGC	1 cut(s)	605
BisI	GCNGC	6 cut(s)	13, 144, 147, 573, 654, 771
BlsI	GCNGC	6 cut(s)	14, 145, 148, 574, 655, 772
Bme1390I	CCNGG	3 cut(s)	17, 448, 721
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	4 cut(s)	19, 213, 348, 417
BmiI	GGNNCC	2 cut(s)	349, 418
BmrFI	CCNGG	3 cut(s)	17, 448, 721
BmsI	GCATC	4 cut(s)	130, 142, 529, 644
BpuEI	CTTGAG	1 cut(s)	735
BpuMI	CCSGG	1 cut(s)	721
BsaI	GGTCTC	1 cut(s)	587
BsaWI	WCCGGW	4 cut(s)	21, 389, 762, 783
BsaXI	ACNNNNNCTCC	2 cut(s)	701, 731
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse1I	ACTGG	3 cut(s)	245, 292, 443
BseAI	TCCGGA	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	17, 448
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMII	CTCAG	3 cut(s)	137, 383, 705
BseNI	ACTGG	3 cut(s)	245, 292, 443
BseXI	GCAGC	5 cut(s)	24, 158, 584, 665, 782
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	3 cut(s)	215, 350, 419
BsiEI	CGRYCG	1 cut(s)	220
BsiSI	CCGG	5 cut(s)	22, 390, 721, 763, 784
BslFI	GGGAC	2 cut(s)	211, 317
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmAI	GTCTC	2 cut(s)	318, 587
BsmFI	GGGAC	2 cut(s)	211, 317
BsnI	GGCC	3 cut(s)	215, 350, 419
Bso31I	GGTCTC	1 cut(s)	587
Bsp13I	TCCGGA	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	217, 703, 786
BspACI	CCGC	3 cut(s)	44, 143, 742
BspANI	GGCC	3 cut(s)	215, 350, 419
BspCNI	CTCAG	3 cut(s)	136, 382, 704
BspEI	TCCGGA	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	349, 418
BspMAI	CTGCAG	1 cut(s)	602
BspMI	ACCTGC	1 cut(s)	605
BspPI	GGATC	2 cut(s)	698, 794
BspTNI	GGTCTC	1 cut(s)	587
BsrI	ACTGG	3 cut(s)	245, 292, 443
BssMI	GATC	3 cut(s)	217, 703, 786
Bst2UI	CCWGG	2 cut(s)	17, 448
Bst4CI	ACNGT	2 cut(s)	109, 202
Bst6I	CTCTTC	1 cut(s)	495
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	619
BstDEI	CTNAG	3 cut(s)	123, 369, 691
BstEII	GGTNACC	1 cut(s)	723
BstF5I	GGATG	1 cut(s)	532
BstKTI	GATC	3 cut(s)	220, 706, 789
BstMAI	GTCTC	2 cut(s)	318, 587
BstMBI	GATC	3 cut(s)	217, 703, 786
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	2 cut(s)	17, 448
BstPI	GGTNACC	1 cut(s)	723
BstSCI	CCNGG	3 cut(s)	15, 446, 719
BstSFI	CTRYAG	1 cut(s)	598
BstV1I	GCAGC	5 cut(s)	24, 158, 584, 665, 782
BstX2I	RGATCY	2 cut(s)	703, 786
BstYI	RGATCY	2 cut(s)	703, 786
BsuRI	GGCC	3 cut(s)	215, 350, 419
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	532
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	3 cut(s)	162, 238, 436
BveI	ACCTGC	1 cut(s)	605
Cac8I	GCNNGC	1 cut(s)	619
Cfr13I	GGNCC	4 cut(s)	19, 213, 348, 417
Csp6I	GTAC	2 cut(s)	295, 442
CviAII	CATG	1 cut(s)	80
CviQI	GTAC	2 cut(s)	295, 442
DdeI	CTNAG	3 cut(s)	123, 369, 691
DpnI	GATC	3 cut(s)	219, 705, 788
DpnII	GATC	3 cut(s)	217, 703, 786
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	587
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	2 cut(s)	597, 660
Eco91I	GGTNACC	1 cut(s)	723
EcoO65I	GGTNACC	1 cut(s)	723
EcoRII	CCWGG	2 cut(s)	15, 446
EcoT22I	ATGCAT	1 cut(s)	637
FaeI	CATG	1 cut(s)	83
FaqI	GGGAC	2 cut(s)	211, 317
FatI	CATG	1 cut(s)	79
FauNDI	CATATG	1 cut(s)	209
FblI	GTMKAC	1 cut(s)	681
Fnu4HI	GCNGC	6 cut(s)	13, 144, 147, 573, 654, 771
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	6 cut(s)	13, 144, 147, 573, 654, 771
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	6 cut(s)	13, 144, 147, 573, 654, 771
HaeIII	GGCC	3 cut(s)	215, 350, 419
HapII	CCGG	5 cut(s)	22, 390, 721, 763, 784
Hin1II	CATG	1 cut(s)	83
HinfI	GANTC	2 cut(s)	76, 759
HpaII	CCGG	5 cut(s)	22, 390, 721, 763, 784
HphI	GGTGA	2 cut(s)	33, 455
Hpy166II	GTNNAC	4 cut(s)	41, 436, 444, 682
Hpy188I	TCNGA	1 cut(s)	640
Hpy188III	TCNNGA	3 cut(s)	22, 272, 524
Hpy8I	GTNNAC	4 cut(s)	41, 436, 444, 682
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	3 cut(s)	263, 635, 680
HpyCH4III	ACNGT	2 cut(s)	109, 202
HpyCH4V	TGCA	8 cut(s)	155, 182, 207, 285, 309, 344, 600, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	3 cut(s)	123, 369, 691
Hsp92II	CATG	1 cut(s)	83
Kpn2I	TCCGGA	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	217, 703, 786
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	5 cut(s)	24, 158, 584, 665, 782
LweI	GCATC	4 cut(s)	130, 142, 529, 644
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	98, 723
MalI	GATC	3 cut(s)	219, 705, 788
MboI	GATC	3 cut(s)	217, 703, 786
MboII	GAAGA	9 cut(s)	41, 44, 47, 50, 53, 387, 452, 512, 781
MflI	RGATCY	2 cut(s)	703, 786
MluCI	AATT	3 cut(s)	117, 164, 358
MlyI	GAGTC	1 cut(s)	768
MnlI	CCTC	3 cut(s)	88, 498, 725
Mph1103I	ATGCAT	1 cut(s)	637
MroI	TCCGGA	1 cut(s)	21
MseI	TTAA	2 cut(s)	546, 582
MslI	CAYNNNNRTG	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	5 cut(s)	22, 390, 721, 763, 784
MspR9I	CCNGG	3 cut(s)	17, 448, 721
MvaI	CCWGG	2 cut(s)	17, 448
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	721
NdeI	CATATG	1 cut(s)	209
NdeII	GATC	3 cut(s)	217, 703, 786
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	2 cut(s)	349, 418
NmuCI	GTSAC	1 cut(s)	98
NsiI	ATGCAT	1 cut(s)	637
OliI	CACNNNNGTG	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	6 cut(s)	14, 145, 148, 574, 655, 772
Ple19I	CGATCG	1 cut(s)	220
PleI	GAGTC	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	767
Psp6I	CCWGG	2 cut(s)	15, 446
PspEI	GGTNACC	1 cut(s)	723
PspGI	CCWGG	2 cut(s)	15, 446
PspN4I	GGNNCC	2 cut(s)	349, 418
PspPI	GGNCC	4 cut(s)	19, 213, 348, 417
PstI	CTGCAG	1 cut(s)	602
PsuI	RGATCY	2 cut(s)	703, 786
PvuI	CGATCG	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	296, 443
RsaNI	GTAC	2 cut(s)	295, 442
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	546, 582
SatI	GCNGC	6 cut(s)	13, 144, 147, 573, 654, 771
Sau3AI	GATC	3 cut(s)	217, 703, 786
Sau96I	GGNCC	4 cut(s)	19, 213, 348, 417
SchI	GAGTC	1 cut(s)	768
ScrFI	CCNGG	3 cut(s)	17, 448, 721
SfaNI	GCATC	4 cut(s)	130, 142, 529, 644
SfcI	CTRYAG	1 cut(s)	598
SinI	GGWCC	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
Sse9I	AATT	3 cut(s)	117, 164, 358
SsiI	CCGC	3 cut(s)	44, 143, 742
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	3 cut(s)	15, 446, 719
TaaI	ACNGT	2 cut(s)	109, 202
TaqI	TCGA	2 cut(s)	93, 489
TasI	AATT	3 cut(s)	117, 164, 358
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	2 cut(s)	546, 582
Tru9I	TTAA	2 cut(s)	546, 582
TscAI	CASTG	3 cut(s)	162, 245, 443
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	5 cut(s)	12, 146, 572, 653, 770
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	68
TspRI	CASTG	3 cut(s)	162, 245, 443
VpaK11BI	GGWCC	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	681
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.