Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000400.1

Orthogroup ID

OG0014499

Physical Location & Seq

Genomic Coordinates Forward (+)

174873 .. 176519

Gene Structure 1647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000400.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgggaagtggcagcctggtccggatagttcctttgtgttcactgcttcttcttcttctttttcctgtgattcacggttggggtatcgagggtcacacgacggtgtgcagaattgctcagtctaggttgagcgatgcggcagcagatgcagtgaagcaattgcttcccaagtatgcagaaaatgacttggggactgtgtgcatatgggccgatcgtgtcaagtttcggtatcactggtcatctgcccttcactacattgacactcctgacaacctttgcacttatcagtacaatagggactgcaaggacgaaaatggagacaaggggcgttgtgttgcaggggccataaacaattacaccactcagcttctcacttacagctccggttcttccaagtcggaatataacctcactgaagcactgttattcctttctcattttttcggagacatccatcagcctctacatgtgggtttcacttcagacagggggggcaataccattgaagttcactggtacaccaggaagcaaaatcttcaccatatatgggatagcaacataatcgaaacagcagaagagaggttctacgagaataatctggatgagctggttgatgcgattaaacagaacattacgactgaatgggcagatgaagttaaggcttgggagacctgcagtttgaacaagacagcatgcccagatgtatatgcatctgaaggtatcaaagcagcttgtgattgggcttacaagggtgtagacgaaggctcagtcttacaagatccatacttcctctcccggttacctatcgtcaataggcggttggctcaaggtggagtccggttagcagccactctcaaccggatcttcggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0006139 GO:0006259 GO:0006308 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1-P1_nuclease

Protein Analysis

290

Amino Acids

32.64

Weight (kDa)

5.67

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68290
fragaria_vesca	FvH4_4g27190
malus_domestica	MD13G1040300.v1.1 MD16G1041300.v1.1
prunus_persica	Prupe.1G312700_v2.0.a1
pyrus_communis	pycom16g03580
rosa_chinensis	RchiOBHm_Chr4g0434991
rosa_laevigata	RLG00000006631
rosa_multiflora	Rmu_sc0000400.1_g000035 Rmu_sc0023421.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376160
rosa_rugosa	Rorug04G0281500 Rorug04G0281500
rosa_samantha	Rh4AG336900 Rh4BG344800 Rh4DG339300
rosa_wichuraiana	Rw4G029370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	680
AccI	GTMKAC	1 cut(s)	756
AccIII	TCCGGA	1 cut(s)	21
AciI	CCGC	2 cut(s)	137, 817
AclWI	GGATC	2 cut(s)	773, 869
AcuI	CTGAAG	3 cut(s)	435, 465, 735
AfaI	GTAC	2 cut(s)	290, 518
AfiI	CCNNNNNNNGG	1 cut(s)	547
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	2 cut(s)	506, 682
AjnI	CCWGG	2 cut(s)	15, 521
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	4 cut(s)	367, 381, 607, 731
AluI	AGCT	4 cut(s)	367, 381, 607, 731
Alw26I	GTCTC	3 cut(s)	312, 441, 662
AlwI	GGATC	2 cut(s)	773, 869
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	2 cut(s)	207, 342
ApeKI	GCWGC	4 cut(s)	12, 140, 728, 845
ArsI	GACNNNNNNTTYG	4 cut(s)	661, 693, 753, 785
AspS9I	GGNCC	3 cut(s)	19, 207, 342
AsuC2I	CCSGG	1 cut(s)	796
AsuHPI	GGTGA	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	19
BbvI	GCAGC	4 cut(s)	24, 152, 740, 857
BccI	CCATC	1 cut(s)	462
BcgI	CGANNNNNNTGC	2 cut(s)	544, 578
BciT130I	CCWGG	2 cut(s)	17, 523
BcnI	CCSGG	1 cut(s)	796
BcoDI	GTCTC	3 cut(s)	312, 441, 662
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	673
BfuAI	ACCTGC	1 cut(s)	680
BisI	GCNGC	5 cut(s)	13, 138, 141, 729, 846
BlsI	GCNGC	5 cut(s)	14, 139, 142, 730, 847
Bme1390I	CCNGG	3 cut(s)	17, 523, 796
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	19, 207, 342
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	3 cut(s)	17, 523, 796
BmsI	GCATC	4 cut(s)	124, 136, 604, 719
BpuEI	CTTGAG	1 cut(s)	810
BpuMI	CCSGG	1 cut(s)	796
BsaI	GGTCTC	1 cut(s)	662
BsaWI	WCCGGW	4 cut(s)	21, 383, 837, 858
BsaXI	ACNNNNNCTCC	2 cut(s)	776, 806
Bsc4I	CCNNNNNNNGG	1 cut(s)	547
Bse1I	ACTGG	2 cut(s)	239, 518
BseAI	TCCGGA	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	17, 523
BseGI	GGATG	2 cut(s)	450, 607
BseLI	CCNNNNNNNGG	1 cut(s)	547
BseMII	CTCAG	3 cut(s)	131, 377, 780
BseNI	ACTGG	2 cut(s)	239, 518
BseXI	GCAGC	4 cut(s)	24, 152, 740, 857
BsgI	GTGCAG	1 cut(s)	127
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	2 cut(s)	209, 344
BsiEI	CGRYCG	1 cut(s)	214
BsiSI	CCGG	5 cut(s)	22, 384, 796, 838, 859
BslFI	GGGAC	2 cut(s)	205, 311
BslI	CCNNNNNNNGG	1 cut(s)	547
BsmAI	GTCTC	3 cut(s)	312, 441, 662
BsmFI	GGGAC	2 cut(s)	205, 311
BsnI	GGCC	2 cut(s)	209, 344
Bso31I	GGTCTC	1 cut(s)	662
Bsp13I	TCCGGA	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	211, 778, 861
BspACI	CCGC	2 cut(s)	137, 817
BspANI	GGCC	2 cut(s)	209, 344
BspCNI	CTCAG	3 cut(s)	130, 376, 779
BspEI	TCCGGA	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	343
BspMAI	CTGCAG	1 cut(s)	677
BspMI	ACCTGC	1 cut(s)	680
BspPI	GGATC	2 cut(s)	773, 869
BspTNI	GGTCTC	1 cut(s)	662
BsrI	ACTGG	2 cut(s)	239, 518
BssMI	GATC	3 cut(s)	211, 778, 861
Bst2UI	CCWGG	2 cut(s)	17, 523
Bst4CI	ACNGT	4 cut(s)	77, 103, 196, 423
Bst6I	CTCTTC	1 cut(s)	570
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	694
BstDEI	CTNAG	3 cut(s)	117, 363, 766
BstEII	GGTNACC	1 cut(s)	798
BstF5I	GGATG	2 cut(s)	450, 607
BstKTI	GATC	3 cut(s)	214, 781, 864
BstMAI	GTCTC	3 cut(s)	312, 441, 662
BstMBI	GATC	3 cut(s)	211, 778, 861
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	2 cut(s)	17, 523
BstNSI	RCATGY	2 cut(s)	470, 696
BstPI	GGTNACC	1 cut(s)	798
BstSCI	CCNGG	3 cut(s)	15, 521, 794
BstSFI	CTRYAG	1 cut(s)	673
BstV1I	GCAGC	4 cut(s)	24, 152, 740, 857
BstX2I	RGATCY	2 cut(s)	778, 861
BstYI	RGATCY	2 cut(s)	778, 861
BsuRI	GGCC	2 cut(s)	209, 344
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	450, 607
BtsI	GCAGTG	2 cut(s)	41, 156
BtsIMutI	CAGTG	6 cut(s)	41, 156, 232, 411, 419, 511
BveI	ACCTGC	1 cut(s)	680
Cac8I	GCNNGC	1 cut(s)	694
Cfr13I	GGNCC	3 cut(s)	19, 207, 342
Csp6I	GTAC	2 cut(s)	289, 517
CviAII	CATG	2 cut(s)	467, 693
CviQI	GTAC	2 cut(s)	289, 517
DdeI	CTNAG	3 cut(s)	117, 363, 766
DpnI	GATC	3 cut(s)	213, 780, 863
DpnII	GATC	3 cut(s)	211, 778, 861
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	662
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	3 cut(s)	435, 465, 735
Eco91I	GGTNACC	1 cut(s)	798
EcoO65I	GGTNACC	1 cut(s)	798
EcoRII	CCWGG	2 cut(s)	15, 521
EcoT22I	ATGCAT	1 cut(s)	712
FaeI	CATG	2 cut(s)	470, 696
FaqI	GGGAC	2 cut(s)	205, 311
FatI	CATG	2 cut(s)	466, 692
FauNDI	CATATG	1 cut(s)	203
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	5 cut(s)	13, 138, 141, 729, 846
FokI	GGATG	2 cut(s)	437, 614
Fsp4HI	GCNGC	5 cut(s)	13, 138, 141, 729, 846
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	5 cut(s)	13, 138, 141, 729, 846
HaeIII	GGCC	2 cut(s)	209, 344
HapII	CCGG	5 cut(s)	22, 384, 796, 838, 859
Hin1II	CATG	2 cut(s)	470, 696
HinfI	GANTC	2 cut(s)	70, 834
HpaII	CCGG	5 cut(s)	22, 384, 796, 838, 859
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	4 cut(s)	41, 511, 519, 757
Hpy188I	TCNGA	4 cut(s)	400, 446, 484, 715
Hpy188III	TCNNGA	3 cut(s)	22, 266, 599
Hpy8I	GTNNAC	4 cut(s)	41, 511, 519, 757
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	3 cut(s)	257, 710, 755
HpyCH4III	ACNGT	4 cut(s)	77, 103, 196, 423
HpyCH4V	TGCA	9 cut(s)	108, 149, 176, 201, 279, 303, 338, 675, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	3 cut(s)	117, 363, 766
Hsp92II	CATG	2 cut(s)	470, 696
Kpn2I	TCCGGA	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	211, 778, 861
LmnI	GCTCC	1 cut(s)	386
Lsp1109I	GCAGC	4 cut(s)	24, 152, 740, 857
LweI	GCATC	4 cut(s)	124, 136, 604, 719
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	92, 798
MalI	GATC	3 cut(s)	213, 780, 863
MboI	GATC	3 cut(s)	211, 778, 861
MboII	GAAGA	7 cut(s)	41, 44, 47, 381, 527, 587, 856
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	2 cut(s)	778, 861
MluCI	AATT	3 cut(s)	111, 158, 352
MlyI	GAGTC	1 cut(s)	843
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	5 cut(s)	82, 419, 471, 573, 800
Mph1103I	ATGCAT	1 cut(s)	712
MroI	TCCGGA	1 cut(s)	21
MseI	TTAA	2 cut(s)	621, 657
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	5 cut(s)	22, 384, 796, 838, 859
MspR9I	CCNGG	3 cut(s)	17, 523, 796
MunI	CAATTG	1 cut(s)	158
MvaI	CCWGG	2 cut(s)	17, 523
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	796
NdeI	CATATG	1 cut(s)	203
NdeII	GATC	3 cut(s)	211, 778, 861
NlaIII	CATG	2 cut(s)	470, 696
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	712
NspI	RCATGY	2 cut(s)	470, 696
OliI	CACNNNNGTG	1 cut(s)	101
PaeI	GCATGC	1 cut(s)	696
PciI	ACATGT	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	5 cut(s)	14, 139, 142, 730, 847
Ple19I	CGATCG	1 cut(s)	214
PleI	GAGTC	1 cut(s)	842
PpsI	GAGTC	1 cut(s)	842
PscI	ACATGT	1 cut(s)	466
Psp6I	CCWGG	2 cut(s)	15, 521
PspEI	GGTNACC	1 cut(s)	798
PspGI	CCWGG	2 cut(s)	15, 521
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	3 cut(s)	19, 207, 342
PstI	CTGCAG	1 cut(s)	677
PsuI	RGATCY	2 cut(s)	778, 861
PvuI	CGATCG	1 cut(s)	214
RsaI	GTAC	2 cut(s)	290, 518
RsaNI	GTAC	2 cut(s)	289, 517
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	621, 657
SatI	GCNGC	5 cut(s)	13, 138, 141, 729, 846
Sau3AI	GATC	3 cut(s)	211, 778, 861
Sau96I	GGNCC	3 cut(s)	19, 207, 342
SchI	GAGTC	1 cut(s)	843
ScrFI	CCNGG	3 cut(s)	17, 523, 796
SfaNI	GCATC	4 cut(s)	124, 136, 604, 719
SfcI	CTRYAG	1 cut(s)	673
SinI	GGWCC	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	825
SmoI	CTYRAG	1 cut(s)	825
SphI	GCATGC	1 cut(s)	696
Sse9I	AATT	3 cut(s)	111, 158, 352
SsiI	CCGC	2 cut(s)	137, 817
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	3 cut(s)	15, 521, 794
TaaI	ACNGT	4 cut(s)	77, 103, 196, 423
TaqI	TCGA	2 cut(s)	87, 564
TasI	AATT	3 cut(s)	111, 158, 352
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	2 cut(s)	621, 657
Tru9I	TTAA	2 cut(s)	621, 657
TscAI	CASTG	6 cut(s)	48, 156, 239, 418, 426, 518
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	4 cut(s)	12, 140, 728, 845
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	666
TspRI	CASTG	6 cut(s)	48, 156, 239, 418, 426, 518
VpaK11BI	GGWCC	1 cut(s)	19
XceI	RCATGY	2 cut(s)	470, 696
XmiI	GTMKAC	1 cut(s)	756
XspI	CTAG	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.