AT1G68725

Lysine-rich arabinogalactan protein 19-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015270
Physical Location & Seq
Forward (+)
25809298 .. 25810130
833 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68725.1

Sequence Viewer

Length: 747 bp
ATGGAATCAAATTCAATCATTTGGTCTCTTCTTTTGGCTTCTGCTCTCATCTCTTCCTTTAGTGTAAATGCACAAGGACCTGCTGCTTCACCAGTAACCTCCACAACCACTGCTCCGCCTCCAACAACTGCTGCTCCTCCAACCACTGCTGCTCCGCCTCCAACTACCACTACTCCACCCGTTTCAGCTGCGCAGCCACCAGCATCTCCGGTTACACCTCCACCAGCAGTTACTCCAACTTCACCACCAGCTCCAAAAGTTGCACCAGTAATCAGCCCCGCAACTCCGCCTCCACAACCACCACAAAGCCCGCCCGCTTCAGCTCCAACCGTCTCACCACCACCTGTATCACCACCACCAGCACCGACGTCTCCCCCACCCACACCAGCTTCACCACCACCTGCACCAGCTTCTCCACCTCCTGCACCAGCTTCACCGCCACCTGCACCAGTTTCCCCACCCCCTGTACAAGCGCCATCACCAATAAGTTTACCACCAGCTCCAGCACCGGCTCCTACCAAGCACAAGAGAAAGCACAAACACAAAAGGCATCACCATGCCCCAGCTCCAGCACCAATTCCCCCAAGCCCTCCATCTCCTCCAGTTCTAACAGATCCACAGGACACGGCTCCAGCACCATCACCAAACACGAATGGAGGAAATGCCTTAAATCAGCTTAAAGGAAGAGCAGTAATGTGGCTCAATACTGGACTAGTAATCCTCTTTCTACTTGCTATGACAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

24.48

Weight (kDa)

10.71

Isoelectric Point (pI)

113.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68725
fragaria_vesca FvH4_4g28430
malus_domestica MD13G1050000.v1.1
prunus_persica Prupe.1G301700_v2.0.a1
pyrus_communis pycom13g04430 pycom16g04470
rosa_chinensis RchiOBHm_Chr4g0436381
rosa_laevigata RLG00000006523
rosa_multiflora Rmu_sc0007205.1_g000001
rosa_roxburghii Rroxscaffold_5G00377550
rosa_rugosa Rorug04G0293400
rosa_samantha Rh4AG347700 Rh4BG356500 Rh4CG371100 Rh4DG350200
rosa_wichuraiana Rw4G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 409, 451
AatII GACGTC 1 cut(s) 371
Acc16I TGCGCA 1 cut(s) 192
Acc36I ACCTGC 3 cut(s) 88, 409, 451
AciI CCGC 7 cut(s) 116, 155, 279, 287, 311, 315, 437
AclWI GGATC 1 cut(s) 608
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 303
AcyI GRCGYC 1 cut(s) 368
AfaI GTAC 1 cut(s) 468
AgsI TTSAA 1 cut(s) 15
AhlI ACTAGT 1 cut(s) 712
AluBI AGCT 9 cut(s) 188, 251, 323, 389, 410, 431, 500, 566, 676
AluI AGCT 9 cut(s) 188, 251, 323, 389, 410, 431, 500, 566, 676
Alw26I GTCTC 3 cut(s) 30, 337, 375
AlwI GGATC 1 cut(s) 608
ApeKI GCWGC 5 cut(s) 83, 131, 149, 188, 193
ApoI RAATTY 1 cut(s) 10
AspLEI GCGC 2 cut(s) 193, 475
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 9 cut(s) 81, 234, 327, 342, 384, 426, 471, 545, 633
AvaII GGWCC 1 cut(s) 77
BbvI GCAGC 5 cut(s) 70, 118, 136, 175, 205
BccI CCATC 3 cut(s) 484, 601, 646
BceAI ACGGC 1 cut(s) 642
BcoDI GTCTC 3 cut(s) 30, 337, 375
BcuI ACTAGT 1 cut(s) 712
BfaI CTAG 1 cut(s) 713
BfoI RGCGCY 1 cut(s) 476
BfuAI ACCTGC 3 cut(s) 88, 409, 451
BisI GCNGC 5 cut(s) 84, 132, 150, 189, 194
BlsI GCNGC 5 cut(s) 85, 133, 151, 190, 195
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 2 cut(s) 513, 630
BmsI GCATC 2 cut(s) 212, 559
BpmI CTGGAG 4 cut(s) 486, 552, 585, 615
BsaHI GRCGYC 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 30
BsaWI WCCGGW 1 cut(s) 208
Bse118I RCCGGY 1 cut(s) 508
Bse1I ACTGG 5 cut(s) 92, 266, 449, 602, 712
BseNI ACTGG 5 cut(s) 92, 266, 449, 602, 712
BseRI GAGGAG 2 cut(s) 126, 588
BseXI GCAGC 5 cut(s) 70, 118, 136, 175, 205
BseYI CCCAGC 1 cut(s) 562
BsgI GTGCAG 3 cut(s) 387, 408, 429
BsiSI CCGG 2 cut(s) 209, 509
BsmAI GTCTC 3 cut(s) 30, 337, 375
BsmBI CGTCTC 2 cut(s) 337, 375
Bso31I GGTCTC 1 cut(s) 30
Bsp1407I TGTACA 1 cut(s) 466
Bsp143I GATC 1 cut(s) 613
BspACI CCGC 7 cut(s) 116, 155, 279, 287, 311, 315, 437
BspLI GGNNCC 2 cut(s) 513, 630
BspMI ACCTGC 3 cut(s) 88, 409, 451
BspPI GGATC 1 cut(s) 608
BspQI GCTCTTC 1 cut(s) 679
BspTNI GGTCTC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 508
BsrGI TGTACA 1 cut(s) 466
BsrI ACTGG 5 cut(s) 92, 266, 449, 602, 712
BssAI RCCGGY 1 cut(s) 508
BssMI GATC 1 cut(s) 613
BssNI GRCGYC 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 3 cut(s) 33, 58, 679
BstACI GRCGYC 1 cut(s) 368
BstAUI TGTACA 1 cut(s) 466
BstC8I GCNNGC 2 cut(s) 311, 315
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 2 cut(s) 193, 475
BstKTI GATC 1 cut(s) 616
BstMAI GTCTC 3 cut(s) 30, 337, 375
BstMBI GATC 1 cut(s) 613
BstMWI GCNNNNNNNGC 1 cut(s) 740
BstV1I GCAGC 5 cut(s) 70, 118, 136, 175, 205
BstX2I RGATCY 1 cut(s) 613
BstYI RGATCY 1 cut(s) 613
BtsI GCAGTG 2 cut(s) 108, 144
BtsIMutI CAGTG 2 cut(s) 108, 144
BveI ACCTGC 3 cut(s) 88, 409, 451
Cac8I GCNNGC 2 cut(s) 311, 315
CfoI GCGC 2 cut(s) 193, 475
Cfr10I RCCGGY 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 467
CviAII CATG 1 cut(s) 557
CviQI GTAC 1 cut(s) 467
DpnI GATC 1 cut(s) 615
DpnII GATC 1 cut(s) 613
Eam1104I CTCTTC 3 cut(s) 33, 58, 679
EarI CTCTTC 3 cut(s) 33, 58, 679
EciI GGCGGA 3 cut(s) 105, 144, 276
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 77
Esp3I CGTCTC 2 cut(s) 337, 375
FaeI CATG 1 cut(s) 560
FaiI YATR 2 cut(s) 558, 737
FatI CATG 1 cut(s) 556
FauI CCCGC 3 cut(s) 286, 318, 322
Fnu4HI GCNGC 5 cut(s) 84, 132, 150, 189, 194
Fsp4HI GCNGC 5 cut(s) 84, 132, 150, 189, 194
FspBI CTAG 1 cut(s) 713
FspI TGCGCA 1 cut(s) 192
GlaI GCGC 2 cut(s) 192, 474
GluI GCNGC 5 cut(s) 84, 132, 150, 189, 194
GsaI CCCAGC 1 cut(s) 566
GsuI CTGGAG 4 cut(s) 486, 552, 585, 615
HaeII RGCGCY 1 cut(s) 476
HapII CCGG 2 cut(s) 209, 509
HhaI GCGC 2 cut(s) 193, 475
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 1 cut(s) 560
Hin6I GCGC 2 cut(s) 191, 473
HinP1I GCGC 2 cut(s) 191, 473
HinfI GANTC 1 cut(s) 5
HpaII CCGG 2 cut(s) 209, 509
HphI GGTGA 9 cut(s) 81, 234, 327, 342, 384, 426, 471, 545, 633
Hpy166II GTNNAC 1 cut(s) 491
Hpy8I GTNNAC 1 cut(s) 491
Hpy99I CGWCG 1 cut(s) 370
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 5 cut(s) 71, 263, 404, 425, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 740
HpySE526I ACGT 1 cut(s) 368
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 1 cut(s) 560
HspAI GCGC 2 cut(s) 191, 473
Kzo9I GATC 1 cut(s) 613
LguI GCTCTTC 1 cut(s) 679
LmnI GCTCC 9 cut(s) 118, 139, 157, 256, 328, 505, 517, 571, 634
Lsp1109I GCAGC 5 cut(s) 70, 118, 136, 175, 205
LweI GCATC 2 cut(s) 212, 559
MaeI CTAG 1 cut(s) 713
MaeII ACGT 1 cut(s) 368
MaeIII GTNAC 3 cut(s) 94, 211, 229
MalI GATC 1 cut(s) 615
MboI GATC 1 cut(s) 613
MboII GAAGA 3 cut(s) 20, 45, 696
MflI RGATCY 1 cut(s) 613
MluCI AATT 2 cut(s) 10, 576
MmeI TCCRAC 5 cut(s) 146, 164, 185, 260, 350
MseI TTAA 2 cut(s) 668, 678
MslI CAYNNNNRTG 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 2 cut(s) 209, 509
MwoI GCNNNNNNNGC 1 cut(s) 740
NdeII GATC 1 cut(s) 613
NlaIII CATG 1 cut(s) 560
NlaIV GGNNCC 2 cut(s) 513, 630
NsbI TGCGCA 1 cut(s) 192
PaqCI CACCTGC 2 cut(s) 409, 451
PciSI GCTCTTC 1 cut(s) 679
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 5 cut(s) 85, 133, 151, 190, 195
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 562
PspN4I GGNNCC 2 cut(s) 513, 630
PspPI GGNCC 1 cut(s) 77
PspPPI RGGWCCY 1 cut(s) 77
PsuI RGATCY 1 cut(s) 613
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 1 cut(s) 468
RsaNI GTAC 1 cut(s) 467
RseI CAYNNNNRTG 1 cut(s) 555
SapI GCTCTTC 1 cut(s) 679
SaqAI TTAA 2 cut(s) 668, 678
SatI GCNGC 5 cut(s) 84, 132, 150, 189, 194
Sau3AI GATC 1 cut(s) 613
Sau96I GGNCC 1 cut(s) 77
SfaNI GCATC 2 cut(s) 212, 559
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 555
SpeI ACTAGT 1 cut(s) 712
Sse9I AATT 2 cut(s) 10, 576
SsiI CCGC 7 cut(s) 116, 155, 279, 287, 311, 315, 437
SspMI CTAG 1 cut(s) 713
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 1 cut(s) 371
TasI AATT 2 cut(s) 10, 576
TatI WGTACW 1 cut(s) 466
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 668, 678
Tru9I TTAA 2 cut(s) 668, 678
TscAI CASTG 2 cut(s) 115, 151
TseI GCWGC 5 cut(s) 83, 131, 149, 188, 193
TspRI CASTG 2 cut(s) 115, 151
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 1 cut(s) 10
XspI CTAG 1 cut(s) 713
ZraI GACGTC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.