RLG00000006523

Lysine-rich arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015270
Physical Location & Seq
Forward (+)
8026898 .. 8027850
953 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006523

Sequence Viewer

Length: 792 bp
ATGGCTTCGACTCTGATGGCCCTGGTTTTGACCTGTCTCACCTTTCAACTAGTCCTTACCAATGCACAAACACCGGCAGCTGCACCCGCTACACCTACAACGCCGCCGCCACCTACCACACCGATTGCACCAGCTGCGCAACCACCGACTGCTGTAACACCACCCCCTGTAACTGCAGCAGCAACCCCACCCACAACCCCGCCAACAACATCACCACCCCCTAAAGTTGCACCATCCACAAGCCCGACAGTCCCACCCCCAAAAACTCCACCAACACAACCACCAAAGATTTCACCTGTCTCAACTCCATCTCAGCCACCAGCACTGCCACTACCACCACCACCAGCTGTTTCACCACCACTACCACCTCCACAAGTAGCACCACAGGTATCCCCAACCCCAGCTCCTGTTAAGAAATCGCCGGCGCCAGCACCAGCCAAGCCAGCACCAGTGCCCTCACCATCACAAGCACCGCCAGTACCAGCGCCAACACCAGTTGTCGCGGAACCAGCTCCAGCCCCTGTGGAAGTGCCGTCACCTGCACCTGCTCCACATAAACACAAGAAAAGGAAGCACAAGCACAGGAGGCATCATCATGCACCAGCACCGGCGCCAACTGTCCAAAGTCCCCCAGCCCCACCTATAGTGACAGATACAGAGGATACAACACCAGCACCATCACCAACTTTGGATTTGAGCGGAGGACATGCACTGCACCAGAAAGGAGCAAAGTCTGCTGTTTGGATTACGACTGGATTAGCTATTGCTATACTGCTGGCAATGACAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

26.33

Weight (kDa)

10.21

Isoelectric Point (pI)

99.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68725
fragaria_vesca FvH4_4g28430
malus_domestica MD13G1050000.v1.1
prunus_persica Prupe.1G301700_v2.0.a1
pyrus_communis pycom13g04430 pycom16g04470
rosa_chinensis RchiOBHm_Chr4g0436381
rosa_laevigata RLG00000006523
rosa_multiflora Rmu_sc0007205.1_g000001
rosa_roxburghii Rroxscaffold_5G00377550
rosa_rugosa Rorug04G0293400
rosa_samantha Rh4AG347700 Rh4BG356500 Rh4CG371100 Rh4DG350200
rosa_wichuraiana Rw4G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 547, 553
Acc16I TGCGCA 1 cut(s) 138
Acc36I ACCTGC 2 cut(s) 547, 553
AccB1I GGYRCC 2 cut(s) 424, 610
AccBSI CCGCTC 1 cut(s) 699
AccII CGCG 1 cut(s) 503
AciI CCGC 7 cut(s) 87, 104, 107, 200, 473, 503, 699
AcyI GRCGYC 2 cut(s) 425, 611
AfaI GTAC 1 cut(s) 480
AgsI TTSAA 1 cut(s) 47
AhlI ACTAGT 1 cut(s) 49
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 7 cut(s) 80, 134, 347, 404, 512, 761, 789
AluI AGCT 7 cut(s) 80, 134, 347, 404, 512, 761, 789
Alw26I GTCTC 2 cut(s) 41, 304
AlwNI CAGNNNCTG 2 cut(s) 407, 521
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 5 cut(s) 77, 80, 134, 176, 179
AspLEI GCGC 4 cut(s) 139, 427, 487, 613
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 7 cut(s) 31, 204, 285, 345, 450, 528, 672
BaeGI GKGCMC 1 cut(s) 456
BanI GGYRCC 2 cut(s) 424, 610
BbvI GCAGC 5 cut(s) 67, 89, 121, 188, 191
BccI CCATC 5 cut(s) 10, 241, 316, 469, 685
BceAI ACGGC 1 cut(s) 517
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 2 cut(s) 400, 655
BcoDI GTCTC 2 cut(s) 41, 304
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 2 cut(s) 50, 790
BfmI CTRYAG 2 cut(s) 174, 642
BfoI RGCGCY 3 cut(s) 428, 488, 614
BfuAI ACCTGC 2 cut(s) 547, 553
BfuI GTATCC 2 cut(s) 400, 655
BisI GCNGC 7 cut(s) 78, 81, 104, 107, 135, 177, 180
BlsI GCNGC 7 cut(s) 79, 82, 105, 108, 136, 178, 181
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 3 cut(s) 426, 507, 612
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 598
BpmI CTGGAG 1 cut(s) 498
BsaHI GRCGYC 2 cut(s) 425, 611
BsaJI CCNNGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
Bse118I RCCGGY 3 cut(s) 73, 421, 607
Bse1I ACTGG 4 cut(s) 449, 476, 494, 757
Bse3DI GCAATG 1 cut(s) 786
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 786
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 4 cut(s) 449, 476, 494, 757
BseSI GKGCMC 1 cut(s) 456
BseXI GCAGC 5 cut(s) 67, 89, 121, 188, 191
BseYI CCCAGC 2 cut(s) 400, 631
BsgI GTGCAG 3 cut(s) 66, 525, 698
Bsh1236I CGCG 1 cut(s) 503
BshFI GGCC 1 cut(s) 20
BshNI GGYRCC 2 cut(s) 424, 610
BsiSI CCGG 3 cut(s) 74, 422, 608
BslFI GGGAC 2 cut(s) 236, 612
BsmAI GTCTC 2 cut(s) 41, 304
BsmFI GGGAC 2 cut(s) 236, 612
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 456
BspACI CCGC 7 cut(s) 87, 104, 107, 200, 473, 503, 699
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 325
BspFNI CGCG 1 cut(s) 503
BspLI GGNNCC 3 cut(s) 426, 507, 612
BspMAI CTGCAG 1 cut(s) 178
BspMI ACCTGC 2 cut(s) 547, 553
BspT107I GGYRCC 2 cut(s) 424, 610
BsrBI CCGCTC 1 cut(s) 699
BsrDI GCAATG 1 cut(s) 786
BsrFI RCCGGY 3 cut(s) 73, 421, 607
BsrI ACTGG 4 cut(s) 449, 476, 494, 757
BssAI RCCGGY 3 cut(s) 73, 421, 607
BssECI CCNNGG 1 cut(s) 21
BssNI GRCGYC 2 cut(s) 425, 611
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 250, 619
BstACI GRCGYC 2 cut(s) 425, 611
BstAPI GCANNNNNTGC 2 cut(s) 134, 734
BstC8I GCNNGC 4 cut(s) 423, 429, 444, 777
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 233
BstFNI CGCG 1 cut(s) 503
BstH2I RGCGCY 3 cut(s) 428, 488, 614
BstHHI GCGC 4 cut(s) 139, 427, 487, 613
BstMAI GTCTC 2 cut(s) 41, 304
BstMWI GCNNNNNNNGC 6 cut(s) 86, 134, 443, 509, 586, 734
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 710
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 2 cut(s) 174, 642
BstSLI GKGCMC 1 cut(s) 456
BstUI CGCG 1 cut(s) 503
BstV1I GCAGC 5 cut(s) 67, 89, 121, 188, 191
BsuI GTATCC 2 cut(s) 400, 655
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 233
BtsI GCAGTG 2 cut(s) 323, 710
BtsIMutI CAGTG 3 cut(s) 323, 456, 710
BveI ACCTGC 2 cut(s) 547, 553
Cac8I GCNNGC 4 cut(s) 423, 429, 444, 777
CaiI CAGNNNCTG 2 cut(s) 407, 521
CfoI GCGC 4 cut(s) 139, 427, 487, 613
Cfr10I RCCGGY 3 cut(s) 73, 421, 607
Cfr13I GGNCC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 479
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviAII CATG 2 cut(s) 596, 707
CviQI GTAC 1 cut(s) 479
DdeI CTNAG 1 cut(s) 312
DinI GGCGCC 2 cut(s) 426, 612
EcoRII CCWGG 1 cut(s) 21
EgeI GGCGCC 2 cut(s) 426, 612
EheI GGCGCC 2 cut(s) 426, 612
FaeI CATG 2 cut(s) 599, 710
FaiI YATR 5 cut(s) 555, 597, 644, 708, 770
FaqI GGGAC 2 cut(s) 236, 612
FatI CATG 2 cut(s) 595, 706
FauI CCCGC 2 cut(s) 94, 207
Fnu4HI GCNGC 7 cut(s) 78, 81, 104, 107, 135, 177, 180
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 7 cut(s) 78, 81, 104, 107, 135, 177, 180
FspBI CTAG 2 cut(s) 50, 790
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 4 cut(s) 138, 426, 486, 612
GluI GCNGC 7 cut(s) 78, 81, 104, 107, 135, 177, 180
GsaI CCCAGC 2 cut(s) 404, 635
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 3 cut(s) 428, 488, 614
HaeIII GGCC 1 cut(s) 20
HapII CCGG 3 cut(s) 74, 422, 608
HhaI GCGC 4 cut(s) 139, 427, 487, 613
Hin1I GRCGYC 2 cut(s) 425, 611
Hin1II CATG 2 cut(s) 599, 710
Hin6I GCGC 4 cut(s) 137, 425, 485, 611
HinP1I GCGC 4 cut(s) 137, 425, 485, 611
HinfI GANTC 1 cut(s) 10
HpaII CCGG 3 cut(s) 74, 422, 608
HphI GGTGA 7 cut(s) 31, 204, 285, 345, 450, 528, 672
Hpy188I TCNGA 1 cut(s) 15
HpyCH4III ACNGT 2 cut(s) 250, 619
HpyCH4V TGCA 9 cut(s) 65, 83, 128, 176, 230, 542, 599, 710, 715
HpyF10VI GCNNNNNNNGC 6 cut(s) 86, 134, 443, 509, 586, 734
HpyF3I CTNAG 1 cut(s) 312
Hsp92I GRCGYC 2 cut(s) 425, 611
Hsp92II CATG 2 cut(s) 599, 710
HspAI GCGC 4 cut(s) 137, 425, 485, 611
KasI GGCGCC 2 cut(s) 424, 610
KroI GCCGGC 1 cut(s) 421
KroNI GCCGGC 1 cut(s) 423
LmnI GCTCC 4 cut(s) 409, 517, 553, 725
Lsp1109I GCAGC 5 cut(s) 67, 89, 121, 188, 191
LweI GCATC 1 cut(s) 598
MaeI CTAG 2 cut(s) 50, 790
MaeIII GTNAC 4 cut(s) 154, 169, 534, 646
MbiI CCGCTC 1 cut(s) 699
MhlI GDGCHC 1 cut(s) 456
Mly113I GGCGCC 2 cut(s) 425, 611
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 5 cut(s) 378, 466, 579, 652, 695
MreI CGCCGGCG 1 cut(s) 421
MroNI GCCGGC 1 cut(s) 421
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 594
MspA1I CMGCKG 3 cut(s) 80, 134, 347
MspI CCGG 3 cut(s) 74, 422, 608
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 6 cut(s) 86, 134, 443, 509, 586, 734
NaeI GCCGGC 1 cut(s) 423
NarI GGCGCC 2 cut(s) 425, 611
NgoMIV GCCGGC 1 cut(s) 421
NlaIII CATG 2 cut(s) 599, 710
NlaIV GGNNCC 3 cut(s) 426, 507, 612
NmuCI GTSAC 2 cut(s) 534, 646
NsbI TGCGCA 1 cut(s) 138
NspI RCATGY 1 cut(s) 710
PaqCI CACCTGC 2 cut(s) 547, 553
PdiI GCCGGC 1 cut(s) 423
PkrI GCNGC 7 cut(s) 79, 82, 105, 108, 136, 178, 181
PleI GAGTC 1 cut(s) 4
PluTI GGCGCC 2 cut(s) 428, 614
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 2 cut(s) 400, 631
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 3 cut(s) 426, 507, 612
PspPI GGNCC 1 cut(s) 19
PstI CTGCAG 1 cut(s) 178
PstNI CAGNNNCTG 2 cut(s) 407, 521
PvuII CAGCTG 3 cut(s) 80, 134, 347
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
RseI CAYNNNNRTG 1 cut(s) 594
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 7 cut(s) 78, 81, 104, 107, 135, 177, 180
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 456
SfaNI GCATC 1 cut(s) 598
SfcI CTRYAG 2 cut(s) 174, 642
SfoI GGCGCC 2 cut(s) 426, 612
SgrAI CRCCGGYG 2 cut(s) 421, 607
SmiMI CAYNNNNRTG 1 cut(s) 594
SpeI ACTAGT 1 cut(s) 49
SsiI CCGC 7 cut(s) 87, 104, 107, 200, 473, 503, 699
SspDI GGCGCC 2 cut(s) 424, 610
SspMI CTAG 2 cut(s) 50, 790
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 250, 619
TaqI TCGA 1 cut(s) 8
TauI GCSGC 2 cut(s) 106, 109
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 3 cut(s) 330, 456, 717
TseFI GTSAC 2 cut(s) 534, 646
TseI GCWGC 5 cut(s) 77, 80, 134, 176, 179
Tsp45I GTSAC 2 cut(s) 534, 646
TspRI CASTG 3 cut(s) 330, 456, 717
XceI RCATGY 1 cut(s) 710
XspI CTAG 2 cut(s) 50, 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.