FvH4_4g28430

Lysine-rich arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015270
Physical Location & Seq
Reverse (-)
29080628 .. 29081798
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28430.t1

Sequence Viewer

Length: 792 bp
ATGGCTTCCACTCTTTTGGCCCTGGTTTTAACCTGTCTCACCTTTCAACTAGTGCTTATCAATGCACAAACACCGGTAGCTGCACCCACTACGGCTACAACACCGCCACCTTCTACCACACCGGTTGCACCAGCTGCACAAGCACCAACAACTGTAACACCACCCCCTGTAACAGCAGCAGCAACCCCACCCACAATCCCGCCAACAACATCCCCAGCCCCTAAAGTTGCACCAGCCACAAGCCCGACAGTTCCACCCCCAAAAACTCCACCAACACAACCACCAAAGATTTCACCAGTCTCAACTCCATCTCAGCCACCACCACTACCACCACTACCACCTCCAACACTACCACCACAGGTATCCCCAACCCCAGCTCCTGTTAAAAAATCACCAGCACCAGCACCAGCTAAGGTAGCACCAGTGCCCTCACCATCACAAGCACCACCAGTCCCGGCGCCAACACCATTGAAAGCATCACCTGCGCCAGCACCAGTTGTTGCGGAACCAGCTCCAGCACCTGTGGAAGTGCCATCACCTGCACCAGCTCCACATAAACACAAGAAAAGGAAGCACAAGCACAGGAGGCATCATCATGCACCAGCACCAGCGCCAACTGTCCAAAGTCCCCCAGCTCCACCTACAGTGACAGATACAGTGGATACAACACCAGCACCATCACCAAGTTTGGATTTGAGCGGAGGAAATGCACTGCACCAGAAAGGAGCGAACTCTGCTATCTGGATTATGACTGGATTAGCTATTCCTATACTGCTGGCAATGACAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

26.33

Weight (kDa)

10.35

Isoelectric Point (pI)

95.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68725
fragaria_vesca FvH4_4g28430
malus_domestica MD13G1050000.v1.1
prunus_persica Prupe.1G301700_v2.0.a1
pyrus_communis pycom13g04430 pycom16g04470
rosa_chinensis RchiOBHm_Chr4g0436381
rosa_laevigata RLG00000006523
rosa_multiflora Rmu_sc0007205.1_g000001
rosa_roxburghii Rroxscaffold_5G00377550
rosa_rugosa Rorug04G0293400
rosa_samantha Rh4AG347700 Rh4BG356500 Rh4CG371100 Rh4DG350200
rosa_wichuraiana Rw4G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 490, 547
Acc36I ACCTGC 2 cut(s) 490, 547
AccB1I GGYRCC 1 cut(s) 457
AccBSI CCGCTC 1 cut(s) 699
AciI CCGC 4 cut(s) 104, 200, 503, 699
AcyI GRCGYC 1 cut(s) 458
AgeI ACCGGT 2 cut(s) 73, 121
AgsI TTSAA 2 cut(s) 47, 472
AhlI ACTAGT 1 cut(s) 49
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 8 cut(s) 80, 134, 377, 410, 512, 548, 635, 761
AluI AGCT 8 cut(s) 80, 134, 377, 410, 512, 548, 635, 761
Alw26I GTCTC 2 cut(s) 41, 304
AlwNI CAGNNNCTG 2 cut(s) 380, 521
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 4 cut(s) 80, 134, 176, 179
AsiGI ACCGGT 2 cut(s) 73, 121
AspLEI GCGC 3 cut(s) 460, 487, 613
AspS9I GGNCC 1 cut(s) 19
AsuC2I CCSGG 1 cut(s) 455
AsuHPI GGTGA 7 cut(s) 31, 285, 384, 423, 471, 528, 672
BaeGI GKGCMC 1 cut(s) 429
BanI GGYRCC 1 cut(s) 457
BbvI GCAGC 4 cut(s) 67, 121, 188, 191
BccI CCATC 4 cut(s) 316, 442, 541, 685
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 2 cut(s) 373, 655
BcnI CCSGG 1 cut(s) 455
BcoDI GTCTC 2 cut(s) 41, 304
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 2 cut(s) 50, 790
BfmI CTRYAG 1 cut(s) 642
BfoI RGCGCY 2 cut(s) 461, 614
BfuAI ACCTGC 2 cut(s) 490, 547
BfuI GTATCC 2 cut(s) 373, 655
BisI GCNGC 4 cut(s) 81, 135, 177, 180
BlsI GCNGC 4 cut(s) 82, 136, 178, 181
Bme1390I CCNGG 2 cut(s) 23, 455
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 2 cut(s) 459, 507
BmrFI CCNGG 2 cut(s) 23, 455
BmsI GCATC 2 cut(s) 485, 598
BpmI CTGGAG 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 411
BpuMI CCSGG 1 cut(s) 455
BsaHI GRCGYC 1 cut(s) 458
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 2 cut(s) 73, 121
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bse118I RCCGGY 2 cut(s) 73, 121
Bse1I ACTGG 5 cut(s) 296, 422, 449, 494, 757
Bse3DI GCAATG 1 cut(s) 786
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 209
BseMI GCAATG 1 cut(s) 786
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 5 cut(s) 296, 422, 449, 494, 757
BseSI GKGCMC 1 cut(s) 429
BseXI GCAGC 4 cut(s) 67, 121, 188, 191
BseYI CCCAGC 3 cut(s) 214, 373, 631
BsgI GTGCAG 4 cut(s) 66, 120, 525, 698
BshFI GGCC 1 cut(s) 20
BshNI GGYRCC 1 cut(s) 457
BshTI ACCGGT 2 cut(s) 73, 121
BsiSI CCGG 3 cut(s) 74, 122, 455
BslFI GGGAC 2 cut(s) 437, 612
BsmAI GTCTC 2 cut(s) 41, 304
BsmFI GGGAC 2 cut(s) 437, 612
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 429
BspACI CCGC 4 cut(s) 104, 200, 503, 699
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 459, 507
BspMI ACCTGC 2 cut(s) 490, 547
BspT107I GGYRCC 1 cut(s) 457
BsrBI CCGCTC 1 cut(s) 699
BsrDI GCAATG 1 cut(s) 786
BsrFI RCCGGY 2 cut(s) 73, 121
BsrI ACTGG 5 cut(s) 296, 422, 449, 494, 757
BssAI RCCGGY 2 cut(s) 73, 121
BssECI CCNNGG 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 5 cut(s) 154, 250, 619, 646, 658
BstACI GRCGYC 1 cut(s) 458
BstAPI GCANNNNNTGC 2 cut(s) 134, 482
BstC8I GCNNGC 2 cut(s) 489, 777
BstDEI CTNAG 2 cut(s) 312, 411
BstF5I GGATG 1 cut(s) 209
BstH2I RGCGCY 2 cut(s) 461, 614
BstHHI GCGC 3 cut(s) 460, 487, 613
BstMAI GTCTC 2 cut(s) 41, 304
BstMWI GCNNNNNNNGC 7 cut(s) 134, 140, 416, 482, 509, 586, 734
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 2 cut(s) 21, 453
BstSFI CTRYAG 1 cut(s) 642
BstSLI GKGCMC 1 cut(s) 429
BstV1I GCAGC 4 cut(s) 67, 121, 188, 191
BstXI CCANNNNNNTGG 1 cut(s) 16
BsuI GTATCC 2 cut(s) 373, 655
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 209
BtsI GCAGTG 1 cut(s) 710
BtsIMutI CAGTG 4 cut(s) 429, 651, 663, 710
BveI ACCTGC 2 cut(s) 490, 547
Cac8I GCNNGC 2 cut(s) 489, 777
CaiI CAGNNNCTG 2 cut(s) 380, 521
CfoI GCGC 3 cut(s) 460, 487, 613
Cfr10I RCCGGY 2 cut(s) 73, 121
Cfr13I GGNCC 1 cut(s) 19
CspAI ACCGGT 2 cut(s) 73, 121
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviAII CATG 1 cut(s) 596
DdeI CTNAG 2 cut(s) 312, 411
DinI GGCGCC 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 21
EgeI GGCGCC 1 cut(s) 459
EheI GGCGCC 1 cut(s) 459
FaeI CATG 1 cut(s) 599
FaiI YATR 4 cut(s) 555, 597, 749, 770
FaqI GGGAC 2 cut(s) 437, 612
FatI CATG 1 cut(s) 595
FauI CCCGC 1 cut(s) 207
Fnu4HI GCNGC 4 cut(s) 81, 135, 177, 180
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 4 cut(s) 81, 135, 177, 180
FspBI CTAG 2 cut(s) 50, 790
GlaI GCGC 3 cut(s) 459, 486, 612
GluI GCNGC 4 cut(s) 81, 135, 177, 180
GsaI CCCAGC 3 cut(s) 218, 377, 635
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 2 cut(s) 461, 614
HaeIII GGCC 1 cut(s) 20
HapII CCGG 3 cut(s) 74, 122, 455
HhaI GCGC 3 cut(s) 460, 487, 613
Hin1I GRCGYC 1 cut(s) 458
Hin1II CATG 1 cut(s) 599
Hin6I GCGC 3 cut(s) 458, 485, 611
HinP1I GCGC 3 cut(s) 458, 485, 611
HpaII CCGG 3 cut(s) 74, 122, 455
HphI GGTGA 7 cut(s) 31, 285, 384, 423, 471, 528, 672
Hpy188III TCNNGA 1 cut(s) 742
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 5 cut(s) 154, 250, 619, 646, 658
HpyCH4V TGCA 9 cut(s) 65, 83, 128, 137, 230, 542, 599, 710, 715
HpyF10VI GCNNNNNNNGC 7 cut(s) 134, 140, 416, 482, 509, 586, 734
HpyF3I CTNAG 2 cut(s) 312, 411
Hsp92I GRCGYC 1 cut(s) 458
Hsp92II CATG 1 cut(s) 599
HspAI GCGC 3 cut(s) 458, 485, 611
KasI GGCGCC 1 cut(s) 457
LmnI GCTCC 5 cut(s) 382, 517, 553, 640, 725
Lsp1109I GCAGC 4 cut(s) 67, 121, 188, 191
LweI GCATC 2 cut(s) 485, 598
MaeI CTAG 2 cut(s) 50, 790
MaeIII GTNAC 3 cut(s) 154, 169, 646
MbiI CCGCTC 1 cut(s) 699
MhlI GDGCHC 1 cut(s) 429
Mly113I GGCGCC 1 cut(s) 458
MmeI TCCRAC 1 cut(s) 368
MnlI CCTC 4 cut(s) 351, 439, 579, 695
MseI TTAA 2 cut(s) 29, 384
MslI CAYNNNNRTG 1 cut(s) 594
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 3 cut(s) 74, 122, 455
MspR9I CCNGG 2 cut(s) 23, 455
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 7 cut(s) 134, 140, 416, 482, 509, 586, 734
NarI GGCGCC 1 cut(s) 458
NciI CCSGG 1 cut(s) 455
NlaIII CATG 1 cut(s) 599
NlaIV GGNNCC 2 cut(s) 459, 507
NmuCI GTSAC 1 cut(s) 646
PaqCI CACCTGC 2 cut(s) 490, 547
PinAI ACCGGT 2 cut(s) 73, 121
PkrI GCNGC 4 cut(s) 82, 136, 178, 181
PluTI GGCGCC 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 3 cut(s) 214, 373, 631
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 459, 507
PspPI GGNCC 1 cut(s) 19
PstNI CAGNNNCTG 2 cut(s) 380, 521
PvuII CAGCTG 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 594
SaqAI TTAA 2 cut(s) 29, 384
SatI GCNGC 4 cut(s) 81, 135, 177, 180
Sau96I GGNCC 1 cut(s) 19
ScrFI CCNGG 2 cut(s) 23, 455
SduI GDGCHC 1 cut(s) 429
SfaNI GCATC 2 cut(s) 485, 598
SfcI CTRYAG 1 cut(s) 642
SfoI GGCGCC 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 594
SpeI ACTAGT 1 cut(s) 49
SsiI CCGC 4 cut(s) 104, 200, 503, 699
SspDI GGCGCC 1 cut(s) 457
SspMI CTAG 2 cut(s) 50, 790
StyD4I CCNGG 2 cut(s) 21, 453
TaaI ACNGT 5 cut(s) 154, 250, 619, 646, 658
Tru1I TTAA 2 cut(s) 29, 384
Tru9I TTAA 2 cut(s) 29, 384
TscAI CASTG 4 cut(s) 429, 651, 663, 717
TseFI GTSAC 1 cut(s) 646
TseI GCWGC 4 cut(s) 80, 134, 176, 179
Tsp45I GTSAC 1 cut(s) 646
TspRI CASTG 4 cut(s) 429, 651, 663, 717
XspI CTAG 2 cut(s) 50, 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.