Rroxscaffold_5G00377550

Lysine-rich arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0015270
Physical Location & Seq
Reverse (-)
58144164 .. 58145242
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00377550.1

Sequence Viewer

Length: 819 bp
ATGGCTTCGACTCTGATGGCCCTGGTTTTGACCTGTCTCACCTTTCAACTAGTCCTTACCAATGCACAAACACCAGCAGCTGCACCCGCTACGGCTACAACGCCGCCGCCACCTACCACACCGATTGCACCAGCTGTGCAACCACCGACTGCTGTAACACCACCCCCTGTAACTGCAGCAGCAACCCCGCCAACAACACCACCACCCCCTAAAGTTGCACCATCCACAAGCCCGACAGTCCCACCCCCTAAAGTTGCACCATCCACAAGCCCAACAGTCCCACCTCCCAAAACTCCACCAACACAACCACCAAAGATTTCACCTGTCTCAACTCCATCTCAGCCACCAGCACTGCCACCACCACCACCACCAGCTGTTTCACCACCACTACCACCTCCACAAGTAGCACCACAGGTATCCCCAACCCCAGCTCCTGTTAAGAAATCACCGGCGCCAGCACCAGCCAAGGCAGCACCAGTGCCCTCACCATCACAAGCACCACCAGTACCAGCGCCAACACCAGTTGTCGCGGAACCAGCTCCAGCCCCTGTGGAAGTGCCGTCACCTGCACCTGCTCCACATAAACACAAGAAAAGGAAGCACAAGCACAGGAGGCATCATCATGCACCAGCACCAGCGCCAACTGTCCAAAGTCCCCCAGCCCCACCTATATTGACAGATACAGAGGATACAACACCAGCACCATCACCAACTTTGGATTTGAGCGGAGGAAATGCACTGCACCAGAAAGGAGCAAAATCTGCTATTTGGATTACGAGTGGATTAGCTATTGCTATACTGCTGGCAATGACAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

27.15

Weight (kDa)

10.26

Isoelectric Point (pI)

101.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68725
fragaria_vesca FvH4_4g28430
malus_domestica MD13G1050000.v1.1
prunus_persica Prupe.1G301700_v2.0.a1
pyrus_communis pycom13g04430 pycom16g04470
rosa_chinensis RchiOBHm_Chr4g0436381
rosa_laevigata RLG00000006523
rosa_multiflora Rmu_sc0007205.1_g000001
rosa_roxburghii Rroxscaffold_5G00377550
rosa_rugosa Rorug04G0293400
rosa_samantha Rh4AG347700 Rh4BG356500 Rh4CG371100 Rh4DG350200
rosa_wichuraiana Rw4G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 574, 580
Acc36I ACCTGC 2 cut(s) 574, 580
AccB1I GGYRCC 1 cut(s) 451
AccBSI CCGCTC 1 cut(s) 726
AccII CGCG 1 cut(s) 530
AciI CCGC 6 cut(s) 87, 104, 107, 188, 530, 726
AcyI GRCGYC 1 cut(s) 452
AfaI GTAC 1 cut(s) 507
AgsI TTSAA 1 cut(s) 47
AhlI ACTAGT 1 cut(s) 49
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 7 cut(s) 80, 134, 374, 431, 539, 788, 816
AluI AGCT 7 cut(s) 80, 134, 374, 431, 539, 788, 816
Alw26I GTCTC 2 cut(s) 41, 331
AlwNI CAGNNNCTG 3 cut(s) 80, 434, 548
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 5 cut(s) 77, 80, 176, 179, 470
AspLEI GCGC 3 cut(s) 454, 514, 640
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 7 cut(s) 31, 312, 372, 438, 477, 555, 699
BaeGI GKGCMC 1 cut(s) 483
BanI GGYRCC 1 cut(s) 451
BbvI GCAGC 5 cut(s) 67, 89, 188, 191, 482
BccI CCATC 6 cut(s) 10, 229, 268, 343, 496, 712
BceAI ACGGC 2 cut(s) 108, 544
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 2 cut(s) 427, 682
BcoDI GTCTC 2 cut(s) 41, 331
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 2 cut(s) 50, 817
BfmI CTRYAG 1 cut(s) 174
BfoI RGCGCY 3 cut(s) 455, 515, 641
BfuAI ACCTGC 2 cut(s) 574, 580
BfuI GTATCC 2 cut(s) 427, 682
BisI GCNGC 7 cut(s) 78, 81, 104, 107, 177, 180, 471
BlsI GCNGC 7 cut(s) 79, 82, 105, 108, 178, 181, 472
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 2 cut(s) 453, 534
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 625
BpmI CTGGAG 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 452
BsaJI CCNNGG 2 cut(s) 21, 465
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 3 cut(s) 476, 503, 521
Bse3DI GCAATG 1 cut(s) 813
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 21, 465
BseGI GGATG 2 cut(s) 221, 260
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 1 cut(s) 353
BseNI ACTGG 3 cut(s) 476, 503, 521
BseSI GKGCMC 1 cut(s) 483
BseXI GCAGC 5 cut(s) 67, 89, 188, 191, 482
BseYI CCCAGC 2 cut(s) 427, 658
BsgI GTGCAG 3 cut(s) 66, 552, 725
Bsh1236I CGCG 1 cut(s) 530
BshFI GGCC 1 cut(s) 20
BshNI GGYRCC 1 cut(s) 451
BsiSI CCGG 1 cut(s) 449
BslFI GGGAC 3 cut(s) 224, 263, 639
BsmAI GTCTC 2 cut(s) 41, 331
BsmFI GGGAC 3 cut(s) 224, 263, 639
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 483
BspACI CCGC 6 cut(s) 87, 104, 107, 188, 530, 726
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 352
BspFNI CGCG 1 cut(s) 530
BspLI GGNNCC 2 cut(s) 453, 534
BspMAI CTGCAG 1 cut(s) 178
BspMI ACCTGC 2 cut(s) 574, 580
BspT107I GGYRCC 1 cut(s) 451
BsrBI CCGCTC 1 cut(s) 726
BsrDI GCAATG 1 cut(s) 813
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 3 cut(s) 476, 503, 521
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 2 cut(s) 21, 465
BssNI GRCGYC 1 cut(s) 452
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 3 cut(s) 238, 277, 646
BstACI GRCGYC 1 cut(s) 452
BstAPI GCANNNNNTGC 1 cut(s) 761
BstC8I GCNNGC 2 cut(s) 456, 804
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 2 cut(s) 221, 260
BstFNI CGCG 1 cut(s) 530
BstH2I RGCGCY 3 cut(s) 455, 515, 641
BstHHI GCGC 3 cut(s) 454, 514, 640
BstMAI GTCTC 2 cut(s) 41, 331
BstMWI GCNNNNNNNGC 5 cut(s) 86, 470, 536, 613, 761
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 483
BstUI CGCG 1 cut(s) 530
BstV1I GCAGC 5 cut(s) 67, 89, 188, 191, 482
BsuI GTATCC 2 cut(s) 427, 682
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 2 cut(s) 221, 260
BtsI GCAGTG 2 cut(s) 350, 737
BtsIMutI CAGTG 3 cut(s) 350, 483, 737
BveI ACCTGC 2 cut(s) 574, 580
Cac8I GCNNGC 2 cut(s) 456, 804
CaiI CAGNNNCTG 3 cut(s) 80, 434, 548
CfoI GCGC 3 cut(s) 454, 514, 640
Cfr10I RCCGGY 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 506
CspCI CAANNNNNGTGG 4 cut(s) 106, 141, 654, 689
CviAII CATG 1 cut(s) 623
CviQI GTAC 1 cut(s) 506
DdeI CTNAG 1 cut(s) 339
DinI GGCGCC 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 465
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 465
EgeI GGCGCC 1 cut(s) 453
EheI GGCGCC 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 1 cut(s) 626
FaiI YATR 4 cut(s) 582, 624, 671, 797
FaqI GGGAC 3 cut(s) 224, 263, 639
FatI CATG 1 cut(s) 622
FauI CCCGC 2 cut(s) 94, 195
Fnu4HI GCNGC 7 cut(s) 78, 81, 104, 107, 177, 180, 471
FokI GGATG 2 cut(s) 208, 247
Fsp4HI GCNGC 7 cut(s) 78, 81, 104, 107, 177, 180, 471
FspBI CTAG 2 cut(s) 50, 817
GlaI GCGC 3 cut(s) 453, 513, 639
GluI GCNGC 7 cut(s) 78, 81, 104, 107, 177, 180, 471
GsaI CCCAGC 2 cut(s) 431, 662
GsuI CTGGAG 1 cut(s) 525
HaeII RGCGCY 3 cut(s) 455, 515, 641
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 449
HhaI GCGC 3 cut(s) 454, 514, 640
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 1 cut(s) 626
Hin6I GCGC 3 cut(s) 452, 512, 638
HinP1I GCGC 3 cut(s) 452, 512, 638
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 449
HphI GGTGA 7 cut(s) 31, 312, 372, 438, 477, 555, 699
Hpy188I TCNGA 1 cut(s) 15
HpyCH4III ACNGT 3 cut(s) 238, 277, 646
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 470, 536, 613, 761
HpyF3I CTNAG 1 cut(s) 339
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 1 cut(s) 626
HspAI GCGC 3 cut(s) 452, 512, 638
KasI GGCGCC 1 cut(s) 451
LmnI GCTCC 4 cut(s) 436, 544, 580, 752
Lsp1109I GCAGC 5 cut(s) 67, 89, 188, 191, 482
LweI GCATC 1 cut(s) 625
MaeI CTAG 2 cut(s) 50, 817
MaeIII GTNAC 3 cut(s) 154, 169, 561
MbiI CCGCTC 1 cut(s) 726
MhlI GDGCHC 1 cut(s) 483
Mly113I GGCGCC 1 cut(s) 452
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 6 cut(s) 294, 405, 493, 606, 679, 722
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 1 cut(s) 621
MspA1I CMGCKG 3 cut(s) 80, 134, 374
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 1 cut(s) 530
MwoI GCNNNNNNNGC 5 cut(s) 86, 470, 536, 613, 761
NarI GGCGCC 1 cut(s) 452
NlaIII CATG 1 cut(s) 626
NlaIV GGNNCC 2 cut(s) 453, 534
NmuCI GTSAC 1 cut(s) 561
PaqCI CACCTGC 2 cut(s) 574, 580
PkrI GCNGC 7 cut(s) 79, 82, 105, 108, 178, 181, 472
PleI GAGTC 1 cut(s) 4
PluTI GGCGCC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 2 cut(s) 427, 658
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 453, 534
PspPI GGNCC 1 cut(s) 19
PstI CTGCAG 1 cut(s) 178
PstNI CAGNNNCTG 3 cut(s) 80, 434, 548
PvuII CAGCTG 3 cut(s) 80, 134, 374
RsaI GTAC 1 cut(s) 507
RsaNI GTAC 1 cut(s) 506
RseI CAYNNNNRTG 1 cut(s) 621
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 7 cut(s) 78, 81, 104, 107, 177, 180, 471
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 483
SfaNI GCATC 1 cut(s) 625
SfcI CTRYAG 1 cut(s) 174
SfoI GGCGCC 1 cut(s) 453
SgrAI CRCCGGYG 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 621
SpeI ACTAGT 1 cut(s) 49
SsiI CCGC 6 cut(s) 87, 104, 107, 188, 530, 726
SspDI GGCGCC 1 cut(s) 451
SspMI CTAG 2 cut(s) 50, 817
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 3 cut(s) 238, 277, 646
TaqI TCGA 1 cut(s) 8
TauI GCSGC 2 cut(s) 106, 109
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 3 cut(s) 357, 483, 744
TseFI GTSAC 1 cut(s) 561
TseI GCWGC 5 cut(s) 77, 80, 176, 179, 470
Tsp45I GTSAC 1 cut(s) 561
TspRI CASTG 3 cut(s) 357, 483, 744
XspI CTAG 2 cut(s) 50, 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.