Rmu_sc0007205.1_g000001

Lysine-rich arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007205.1
OG0015270
Physical Location & Seq
Forward (+)
128 .. 817
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007205.1_g000001.1.cds

Sequence Viewer

Length: 690 bp
atggcttcgactctgatggccctggttttgacctgtctcacctttcaactagtccttaccaatgcacaaacaccagcagctgcacccactacggctacaacgccgccaccacctaccacaccgattgcaccagctgcgcaaccaccgattgctgtaacaccaccccctgtaaccccacccacaaccccgccaacaacatcaccaccccctaaagttgcaccatccacaagcccgacagtcccacccccaaaaactccaccaacacaaccaccaaagatttcacctgtctcaactccatctcagccaccaacactgccaccaccacaaccaccagttgtttcaccaccactaccacctccacaagtagcaccacaggtatccccaaccccagctcctgttaagaaaccgccggcgccagcaccagccaaggcagcaccagtgccctcaccatcacaagcaccgccagtaccagcgccaacaccagttgtcgcggaaccagctccagcccctgtggaagtgccgtcacaagcacctgctccacataaacacaagaaaaggaagcacaagcacaggaggcatcatcatgcaccagcaccggcgccaactgtccaaagtcccccagccccacctatagtgacagatgtagaggatacaacaccagcaccatcaccaactttggatttggtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

23.13

Weight (kDa)

10.09

Isoelectric Point (pI)

108.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68725
fragaria_vesca FvH4_4g28430
malus_domestica MD13G1050000.v1.1
prunus_persica Prupe.1G301700_v2.0.a1
pyrus_communis pycom13g04430 pycom16g04470
rosa_chinensis RchiOBHm_Chr4g0436381
rosa_laevigata RLG00000006523
rosa_multiflora Rmu_sc0007205.1_g000001
rosa_roxburghii Rroxscaffold_5G00377550
rosa_rugosa Rorug04G0293400
rosa_samantha Rh4AG347700 Rh4BG356500 Rh4CG371100 Rh4DG350200
rosa_wichuraiana Rw4G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 541
Acc16I TGCGCA 1 cut(s) 138
Acc36I ACCTGC 1 cut(s) 541
AccB1I GGYRCC 2 cut(s) 412, 598
AccII CGCG 1 cut(s) 491
AciI CCGC 5 cut(s) 104, 188, 407, 461, 491
AcyI GRCGYC 2 cut(s) 413, 599
AfaI GTAC 1 cut(s) 468
AgsI TTSAA 1 cut(s) 47
AhlI ACTAGT 1 cut(s) 49
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 4 cut(s) 80, 134, 392, 500
AluI AGCT 4 cut(s) 80, 134, 392, 500
Alw26I GTCTC 2 cut(s) 41, 292
AlwNI CAGNNNCTG 3 cut(s) 80, 395, 509
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 4 cut(s) 77, 80, 134, 431
AspLEI GCGC 4 cut(s) 139, 415, 475, 601
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 6 cut(s) 31, 192, 273, 333, 438, 660
BaeGI GKGCMC 1 cut(s) 444
BanI GGYRCC 2 cut(s) 412, 598
BbvI GCAGC 4 cut(s) 67, 89, 121, 443
BccI CCATC 5 cut(s) 10, 229, 304, 457, 673
BceAI ACGGC 2 cut(s) 108, 505
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 2 cut(s) 388, 643
BcoDI GTCTC 2 cut(s) 41, 292
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 630
BfoI RGCGCY 3 cut(s) 416, 476, 602
BfuAI ACCTGC 1 cut(s) 541
BfuI GTATCC 2 cut(s) 388, 643
BisI GCNGC 5 cut(s) 78, 81, 104, 135, 432
BlsI GCNGC 5 cut(s) 79, 82, 105, 136, 433
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 3 cut(s) 414, 495, 600
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 586
BpmI CTGGAG 1 cut(s) 486
BsaHI GRCGYC 2 cut(s) 413, 599
BsaJI CCNNGG 2 cut(s) 21, 426
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bse118I RCCGGY 2 cut(s) 409, 595
Bse1I ACTGG 4 cut(s) 332, 437, 464, 482
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 21, 426
BseGI GGATG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 4 cut(s) 332, 437, 464, 482
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 4 cut(s) 67, 89, 121, 443
BseYI CCCAGC 2 cut(s) 388, 619
BsgI GTGCAG 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 491
BshFI GGCC 1 cut(s) 20
BshNI GGYRCC 2 cut(s) 412, 598
BsiSI CCGG 2 cut(s) 410, 596
BslFI GGGAC 2 cut(s) 224, 600
BsmAI GTCTC 2 cut(s) 41, 292
BsmFI GGGAC 2 cut(s) 224, 600
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 444
BspACI CCGC 5 cut(s) 104, 188, 407, 461, 491
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 1 cut(s) 491
BspLI GGNNCC 3 cut(s) 414, 495, 600
BspMI ACCTGC 1 cut(s) 541
BspT107I GGYRCC 2 cut(s) 412, 598
BsrFI RCCGGY 2 cut(s) 409, 595
BsrI ACTGG 4 cut(s) 332, 437, 464, 482
BssAI RCCGGY 2 cut(s) 409, 595
BssECI CCNNGG 2 cut(s) 21, 426
BssNI GRCGYC 2 cut(s) 413, 599
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 238, 607
BstACI GRCGYC 2 cut(s) 413, 599
BstAPI GCANNNNNTGC 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 411, 417
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 221
BstFNI CGCG 1 cut(s) 491
BstH2I RGCGCY 3 cut(s) 416, 476, 602
BstHHI GCGC 4 cut(s) 139, 415, 475, 601
BstMAI GTCTC 2 cut(s) 41, 292
BstMWI GCNNNNNNNGC 4 cut(s) 134, 431, 497, 574
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 630
BstSLI GKGCMC 1 cut(s) 444
BstUI CGCG 1 cut(s) 491
BstV1I GCAGC 4 cut(s) 67, 89, 121, 443
BsuI GTATCC 2 cut(s) 388, 643
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 221
BtsI GCAGTG 1 cut(s) 311
BtsIMutI CAGTG 2 cut(s) 311, 444
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 2 cut(s) 411, 417
CaiI CAGNNNCTG 3 cut(s) 80, 395, 509
CfoI GCGC 4 cut(s) 139, 415, 475, 601
Cfr10I RCCGGY 2 cut(s) 409, 595
Cfr13I GGNCC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 467
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviAII CATG 1 cut(s) 584
CviQI GTAC 1 cut(s) 467
DdeI CTNAG 1 cut(s) 300
DinI GGCGCC 2 cut(s) 414, 600
Eco130I CCWWGG 1 cut(s) 426
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 426
EgeI GGCGCC 2 cut(s) 414, 600
EheI GGCGCC 2 cut(s) 414, 600
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 1 cut(s) 587
FaiI YATR 4 cut(s) 543, 585, 632, 688
FaqI GGGAC 2 cut(s) 224, 600
FatI CATG 1 cut(s) 583
FauI CCCGC 1 cut(s) 195
Fnu4HI GCNGC 5 cut(s) 78, 81, 104, 135, 432
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 5 cut(s) 78, 81, 104, 135, 432
FspBI CTAG 1 cut(s) 50
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 4 cut(s) 138, 414, 474, 600
GluI GCNGC 5 cut(s) 78, 81, 104, 135, 432
GsaI CCCAGC 2 cut(s) 392, 623
GsuI CTGGAG 1 cut(s) 486
HaeII RGCGCY 3 cut(s) 416, 476, 602
HaeIII GGCC 1 cut(s) 20
HapII CCGG 2 cut(s) 410, 596
HhaI GCGC 4 cut(s) 139, 415, 475, 601
Hin1I GRCGYC 2 cut(s) 413, 599
Hin1II CATG 1 cut(s) 587
Hin6I GCGC 4 cut(s) 137, 413, 473, 599
HinP1I GCGC 4 cut(s) 137, 413, 473, 599
HinfI GANTC 1 cut(s) 10
HpaII CCGG 2 cut(s) 410, 596
HphI GGTGA 6 cut(s) 31, 192, 273, 333, 438, 660
Hpy188I TCNGA 1 cut(s) 15
HpyCH4III ACNGT 2 cut(s) 238, 607
HpyCH4V TGCA 5 cut(s) 65, 83, 128, 218, 587
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 431, 497, 574
HpyF3I CTNAG 1 cut(s) 300
Hsp92I GRCGYC 2 cut(s) 413, 599
Hsp92II CATG 1 cut(s) 587
HspAI GCGC 4 cut(s) 137, 413, 473, 599
KasI GGCGCC 2 cut(s) 412, 598
KroI GCCGGC 1 cut(s) 409
KroNI GCCGGC 1 cut(s) 411
LmnI GCTCC 3 cut(s) 397, 505, 541
Lsp1109I GCAGC 4 cut(s) 67, 89, 121, 443
LweI GCATC 1 cut(s) 586
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 4 cut(s) 154, 169, 522, 634
MhlI GDGCHC 1 cut(s) 444
Mly113I GGCGCC 2 cut(s) 413, 599
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 4 cut(s) 366, 454, 567, 640
MreI CGCCGGCG 1 cut(s) 409
MroNI GCCGGC 1 cut(s) 409
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 582
MspA1I CMGCKG 2 cut(s) 80, 134
MspI CCGG 2 cut(s) 410, 596
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 1 cut(s) 491
MwoI GCNNNNNNNGC 4 cut(s) 134, 431, 497, 574
NaeI GCCGGC 1 cut(s) 411
NarI GGCGCC 2 cut(s) 413, 599
NgoMIV GCCGGC 1 cut(s) 409
NlaIII CATG 1 cut(s) 587
NlaIV GGNNCC 3 cut(s) 414, 495, 600
NmuCI GTSAC 2 cut(s) 522, 634
NsbI TGCGCA 1 cut(s) 138
PaqCI CACCTGC 1 cut(s) 541
PdiI GCCGGC 1 cut(s) 411
PkrI GCNGC 5 cut(s) 79, 82, 105, 136, 433
PleI GAGTC 1 cut(s) 4
PluTI GGCGCC 2 cut(s) 416, 602
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 2 cut(s) 388, 619
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 3 cut(s) 414, 495, 600
PspPI GGNCC 1 cut(s) 19
PstNI CAGNNNCTG 3 cut(s) 80, 395, 509
PvuII CAGCTG 2 cut(s) 80, 134
RsaI GTAC 1 cut(s) 468
RsaNI GTAC 1 cut(s) 467
RseI CAYNNNNRTG 1 cut(s) 582
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 5 cut(s) 78, 81, 104, 135, 432
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 444
SfaNI GCATC 1 cut(s) 586
SfcI CTRYAG 1 cut(s) 630
SfoI GGCGCC 2 cut(s) 414, 600
SgrAI CRCCGGYG 2 cut(s) 409, 595
SmiMI CAYNNNNRTG 1 cut(s) 582
SpeI ACTAGT 1 cut(s) 49
SsiI CCGC 5 cut(s) 104, 188, 407, 461, 491
SspDI GGCGCC 2 cut(s) 412, 598
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 238, 607
TaqI TCGA 1 cut(s) 8
TauI GCSGC 1 cut(s) 106
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 2 cut(s) 318, 444
TseFI GTSAC 2 cut(s) 522, 634
TseI GCWGC 4 cut(s) 77, 80, 134, 431
Tsp45I GTSAC 2 cut(s) 522, 634
TspRI CASTG 2 cut(s) 318, 444
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.