Rh4BG356500

Lysine-rich arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015270
Physical Location & Seq
Reverse (-)
51664517 .. 51665224
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG356500.1

Sequence Viewer

Length: 708 bp
ATGGCTTCGACTCTGATGGCCCTGGTTTTGACCTGTCTCACCTTTCAACTAGTCCTTACCAATGCACAAACACCAGCAGCTGCACCCACTACGGCTACAACGCCGCCGCCACCTACCACACCGATTGCACCAGTTGTGCAACCGCCGACTGCTGTAACACCACCCCCTGTAACTGCAGCAGCAACCCCACCCACAACCCCGCCAACAACATCACCACTCCCTAAAGTTGCACCATCCACAAGCCCGACAGTCCCACCCCCAAAAACTCCACCAACACAACCACCAAAGATTTCACCTGTCTCAACTCCATCTCAGCCACCAGCACTGCCACCACCACCACCATCAGCTGTTTCACCACCACTACCACCTCCACAAGTAGCACCACAGGTATCCCCAACCCCAGCTCCTGTTAAGAAGTCGCCGGCACCAGCACCAGCACCAGCCAAGGCAGCACCAGTGCCCTCACCATCACAAGCACCGCCAGTACCAGCGCCAACACCAGTTGTTGCGGAACCAGCTCCAGCCCCTGTGGAAGTGCCGTCACCTGCACCTGCTCCACATAAACACAAGAAAAGGAAGCACAAGCACAGGAGGCATCATCATGCACCAGCACCAGCGCCAACTGTCCAAAGTCCCCCAGCCCCACCTATAGTGACAGATACAGAGGATACAACACCAGCACCATCACCAACTTTGGATTTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

23.53

Weight (kDa)

10.09

Isoelectric Point (pI)

110.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68725
fragaria_vesca FvH4_4g28430
malus_domestica MD13G1050000.v1.1
prunus_persica Prupe.1G301700_v2.0.a1
pyrus_communis pycom13g04430 pycom16g04470
rosa_chinensis RchiOBHm_Chr4g0436381
rosa_laevigata RLG00000006523
rosa_multiflora Rmu_sc0007205.1_g000001
rosa_roxburghii Rroxscaffold_5G00377550
rosa_rugosa Rorug04G0293400
rosa_samantha Rh4AG347700 Rh4BG356500 Rh4CG371100 Rh4DG350200
rosa_wichuraiana Rw4G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 553, 559
Acc36I ACCTGC 2 cut(s) 553, 559
AccB1I GGYRCC 1 cut(s) 424
AciI CCGC 6 cut(s) 104, 107, 143, 200, 479, 509
AfaI GTAC 1 cut(s) 486
AgsI TTSAA 1 cut(s) 47
AhlI ACTAGT 1 cut(s) 49
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 4 cut(s) 80, 347, 404, 518
AluI AGCT 4 cut(s) 80, 347, 404, 518
Alw26I GTCTC 2 cut(s) 41, 304
AlwNI CAGNNNCTG 3 cut(s) 80, 407, 527
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 5 cut(s) 77, 80, 176, 179, 449
AspLEI GCGC 2 cut(s) 493, 619
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 7 cut(s) 31, 204, 285, 345, 456, 534, 678
BaeGI GKGCMC 1 cut(s) 462
BanI GGYRCC 1 cut(s) 424
BbvI GCAGC 5 cut(s) 67, 89, 188, 191, 461
BccI CCATC 6 cut(s) 10, 241, 316, 349, 475, 691
BceAI ACGGC 2 cut(s) 108, 523
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 2 cut(s) 400, 661
BcoDI GTCTC 2 cut(s) 41, 304
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 2 cut(s) 174, 648
BfoI RGCGCY 2 cut(s) 494, 620
BfuAI ACCTGC 2 cut(s) 553, 559
BfuI GTATCC 2 cut(s) 400, 661
BisI GCNGC 7 cut(s) 78, 81, 104, 107, 177, 180, 450
BlsI GCNGC 7 cut(s) 79, 82, 105, 108, 178, 181, 451
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 2 cut(s) 426, 513
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 604
BpmI CTGGAG 1 cut(s) 504
BsaJI CCNNGG 2 cut(s) 21, 444
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 4 cut(s) 131, 455, 482, 500
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 21, 444
BseGI GGATG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 4 cut(s) 131, 455, 482, 500
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 5 cut(s) 67, 89, 188, 191, 461
BseYI CCCAGC 2 cut(s) 400, 637
BsgI GTGCAG 2 cut(s) 66, 531
BshFI GGCC 1 cut(s) 20
BshNI GGYRCC 1 cut(s) 424
BsiSI CCGG 1 cut(s) 422
BslFI GGGAC 2 cut(s) 236, 618
BsmAI GTCTC 2 cut(s) 41, 304
BsmFI GGGAC 2 cut(s) 236, 618
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 462
BspACI CCGC 6 cut(s) 104, 107, 143, 200, 479, 509
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 426, 513
BspMAI CTGCAG 1 cut(s) 178
BspMI ACCTGC 2 cut(s) 553, 559
BspT107I GGYRCC 1 cut(s) 424
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 4 cut(s) 131, 455, 482, 500
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 2 cut(s) 21, 444
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 250, 625
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 233
BstH2I RGCGCY 2 cut(s) 494, 620
BstHHI GCGC 2 cut(s) 493, 619
BstMAI GTCTC 2 cut(s) 41, 304
BstMWI GCNNNNNNNGC 3 cut(s) 449, 515, 592
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 2 cut(s) 174, 648
BstSLI GKGCMC 1 cut(s) 462
BstV1I GCAGC 5 cut(s) 67, 89, 188, 191, 461
BsuI GTATCC 2 cut(s) 400, 661
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 233
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 2 cut(s) 323, 462
BveI ACCTGC 2 cut(s) 553, 559
Cac8I GCNNGC 1 cut(s) 423
CaiI CAGNNNCTG 3 cut(s) 80, 407, 527
CfoI GCGC 2 cut(s) 493, 619
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 485
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviAII CATG 1 cut(s) 602
CviQI GTAC 1 cut(s) 485
DdeI CTNAG 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 444
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 1 cut(s) 605
FaiI YATR 4 cut(s) 561, 603, 650, 706
FaqI GGGAC 2 cut(s) 236, 618
FatI CATG 1 cut(s) 601
FauI CCCGC 1 cut(s) 207
Fnu4HI GCNGC 7 cut(s) 78, 81, 104, 107, 177, 180, 450
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 7 cut(s) 78, 81, 104, 107, 177, 180, 450
FspBI CTAG 1 cut(s) 50
GlaI GCGC 2 cut(s) 492, 618
GluI GCNGC 7 cut(s) 78, 81, 104, 107, 177, 180, 450
GsaI CCCAGC 2 cut(s) 404, 641
GsuI CTGGAG 1 cut(s) 504
HaeII RGCGCY 2 cut(s) 494, 620
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 422
HhaI GCGC 2 cut(s) 493, 619
Hin1II CATG 1 cut(s) 605
Hin6I GCGC 2 cut(s) 491, 617
HinP1I GCGC 2 cut(s) 491, 617
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 422
HphI GGTGA 7 cut(s) 31, 204, 285, 345, 456, 534, 678
Hpy188I TCNGA 1 cut(s) 15
HpyCH4III ACNGT 2 cut(s) 250, 625
HpyCH4V TGCA 8 cut(s) 65, 83, 128, 139, 176, 230, 548, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 449, 515, 592
HpyF3I CTNAG 1 cut(s) 312
Hsp92II CATG 1 cut(s) 605
HspAI GCGC 2 cut(s) 491, 617
KroI GCCGGC 1 cut(s) 421
KroNI GCCGGC 1 cut(s) 423
LmnI GCTCC 3 cut(s) 409, 523, 559
Lsp1109I GCAGC 5 cut(s) 67, 89, 188, 191, 461
LweI GCATC 1 cut(s) 604
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 4 cut(s) 154, 169, 540, 652
MhlI GDGCHC 1 cut(s) 462
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 4 cut(s) 378, 472, 585, 658
MroNI GCCGGC 1 cut(s) 421
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 600
MspA1I CMGCKG 2 cut(s) 80, 347
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 3 cut(s) 449, 515, 592
NaeI GCCGGC 1 cut(s) 423
NgoMIV GCCGGC 1 cut(s) 421
NlaIII CATG 1 cut(s) 605
NlaIV GGNNCC 2 cut(s) 426, 513
NmuCI GTSAC 2 cut(s) 540, 652
PaqCI CACCTGC 2 cut(s) 553, 559
PdiI GCCGGC 1 cut(s) 423
PkrI GCNGC 7 cut(s) 79, 82, 105, 108, 178, 181, 451
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 2 cut(s) 400, 637
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 426, 513
PspPI GGNCC 1 cut(s) 19
PstI CTGCAG 1 cut(s) 178
PstNI CAGNNNCTG 3 cut(s) 80, 407, 527
PvuII CAGCTG 2 cut(s) 80, 347
RsaI GTAC 1 cut(s) 486
RsaNI GTAC 1 cut(s) 485
RseI CAYNNNNRTG 1 cut(s) 600
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 7 cut(s) 78, 81, 104, 107, 177, 180, 450
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 462
SfaNI GCATC 1 cut(s) 604
SfcI CTRYAG 2 cut(s) 174, 648
SmiMI CAYNNNNRTG 1 cut(s) 600
SpeI ACTAGT 1 cut(s) 49
SsiI CCGC 6 cut(s) 104, 107, 143, 200, 479, 509
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 2 cut(s) 250, 625
TaqI TCGA 1 cut(s) 8
TauI GCSGC 2 cut(s) 106, 109
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 2 cut(s) 330, 462
TseFI GTSAC 2 cut(s) 540, 652
TseI GCWGC 5 cut(s) 77, 80, 176, 179, 449
Tsp45I GTSAC 2 cut(s) 540, 652
TspRI CASTG 2 cut(s) 330, 462
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.