Prupe.1G301700_v2.0.a1

Lysine-rich arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015270
Physical Location & Seq
Forward (+)
29654018 .. 29655611
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G301700.1

Sequence Viewer

Length: 810 bp
ATGGCTTCAATTGTCTTGGCTTTCGTTCTAAGTTGTCTTAGCTTTCTACTAGTCCTTACCAATGCACAAACACCGGCAGCTGCACCCTCTACTCTGCCGGCTGCAACGCCCCCACCTACCACCACACCAGCTGCCCCGGCTACTTTGCCAACAACAACTCCACCAACTTCTCCTGCATCACCAACTGCAGCAACACAACCACCTGTAAACGCAGCAGCAACCCCACCCACAACCACACCTACGTCACCATCCCCTAAGGTTGCACCAGCCACAAGCCCAACAGTCCCACCCCCACTACCACAAAGTCCACCTGCCTCAACTCCATCACAGCCACCAGCACTTCCGCCACCATCACCCGTTTCACCACCACCACTGCCACCTCCTGTACCAGCACCAATTCAAGCACCACCAGCACCAGCTCCTGTTAAAGAGACACCAGCACCAGCACCAGCTAAGGTAGCACCAGTGCCCTCACCATCAAAACCACCCCCAGCACCAGCTCCAGCACCAGTTCTTGTGCCACCAGCTGCAGCACCAGTGCTAGTACCGTCAACTGCTCCTGCTCCACCCAAACACAGGAGGCACAGGCACAAGCACAGGAGGCATCATCATGCACCAGCACCTGCACCAACTGTACTAAGCCCCCCAGCACCACCTACTACAGTGACAGATACAGAGGAGACAACACCGGCACCATCACCCAGTTTGAATTTGAATGGAGGAAATGCACTGCACCAGAAAGGAGGGATATCGGGAATGTGGGTTACAATTGGATTAGCAATTGCTATACTGCTGGCAATGAGAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

26.64

Weight (kDa)

11.04

Isoelectric Point (pI)

107.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68725
fragaria_vesca FvH4_4g28430
malus_domestica MD13G1050000.v1.1
prunus_persica Prupe.1G301700_v2.0.a1
pyrus_communis pycom13g04430 pycom16g04470
rosa_chinensis RchiOBHm_Chr4g0436381
rosa_laevigata RLG00000006523
rosa_multiflora Rmu_sc0007205.1_g000001
rosa_roxburghii Rroxscaffold_5G00377550
rosa_rugosa Rorug04G0293400
rosa_samantha Rh4AG347700 Rh4BG356500 Rh4CG371100 Rh4DG350200
rosa_wichuraiana Rw4G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 319, 631
Acc36I ACCTGC 2 cut(s) 319, 631
AccB1I GGYRCC 1 cut(s) 691
AciI CCGC 1 cut(s) 344
AcsI RAATTY 1 cut(s) 709
AfaI GTAC 3 cut(s) 387, 546, 636
AfiI CCNNNNNNNGG 1 cut(s) 576
AgsI TTSAA 4 cut(s) 9, 401, 709, 715
AhlI ACTAGT 1 cut(s) 49
AluBI AGCT 8 cut(s) 42, 80, 131, 419, 452, 500, 527, 807
AluI AGCT 8 cut(s) 42, 80, 131, 419, 452, 500, 527, 807
Alw26I GTCTC 2 cut(s) 425, 674
AlwNI CAGNNNCTG 2 cut(s) 422, 623
ApeKI GCWGC 9 cut(s) 77, 80, 101, 131, 188, 212, 215, 527, 530
ApoI RAATTY 1 cut(s) 709
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 6 cut(s) 171, 237, 345, 354, 465, 690
AxyI CCTNAGG 1 cut(s) 255
BaeGI GKGCMC 1 cut(s) 471
BanI GGYRCC 1 cut(s) 691
BbvI GCAGC 9 cut(s) 67, 88, 89, 118, 200, 224, 227, 514, 542
BccI CCATC 5 cut(s) 256, 331, 358, 484, 703
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 2 cut(s) 425, 674
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 2 cut(s) 50, 542
BfmI CTRYAG 3 cut(s) 186, 528, 660
BfuAI ACCTGC 2 cut(s) 319, 631
BisI GCNGC 9 cut(s) 78, 81, 102, 132, 189, 213, 216, 528, 531
BlsI GCNGC 9 cut(s) 79, 82, 103, 133, 190, 214, 217, 529, 532
Bme1390I CCNGG 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 693
BmrFI CCNGG 1 cut(s) 137
BmrI ACTGGG 1 cut(s) 696
BmsI GCATC 2 cut(s) 185, 613
BmuI ACTGGG 1 cut(s) 696
BpmI CTGGAG 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 453
BpuMI CCSGG 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 1 cut(s) 576
Bse118I RCCGGY 3 cut(s) 73, 97, 688
Bse1I ACTGG 4 cut(s) 464, 509, 536, 702
Bse21I CCTNAGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 804
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 248
BseLI CCNNNNNNNGG 1 cut(s) 576
BseMI GCAATG 1 cut(s) 804
BseNI ACTGG 4 cut(s) 464, 509, 536, 702
BseRI GAGGAG 1 cut(s) 692
BseSI GKGCMC 1 cut(s) 471
BseXI GCAGC 9 cut(s) 67, 88, 89, 118, 200, 224, 227, 514, 542
BseYI CCCAGC 2 cut(s) 490, 646
BsgI GTGCAG 3 cut(s) 66, 609, 716
BshNI GGYRCC 1 cut(s) 691
BsiSI CCGG 4 cut(s) 74, 98, 137, 689
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 576
BsmAI GTCTC 2 cut(s) 425, 674
BsmFI GGGAC 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 471
BspACI CCGC 1 cut(s) 344
BspLI GGNNCC 1 cut(s) 693
BspMAI CTGCAG 2 cut(s) 190, 532
BspMI ACCTGC 2 cut(s) 319, 631
BspT107I GGYRCC 1 cut(s) 691
BsrDI GCAATG 1 cut(s) 804
BsrFI RCCGGY 3 cut(s) 73, 97, 688
BsrI ACTGG 4 cut(s) 464, 509, 536, 702
BssAI RCCGGY 3 cut(s) 73, 97, 688
BssECI CCNNGG 1 cut(s) 135
Bst4CI ACNGT 4 cut(s) 283, 549, 634, 664
BstC8I GCNNGC 2 cut(s) 99, 795
BstDEI CTNAG 5 cut(s) 29, 38, 255, 453, 638
BstF5I GGATG 1 cut(s) 248
BstMAI GTCTC 2 cut(s) 425, 674
BstMWI GCNNNNNNNGC 4 cut(s) 137, 410, 458, 601
BstSCI CCNGG 1 cut(s) 135
BstSFI CTRYAG 3 cut(s) 186, 528, 660
BstSLI GKGCMC 1 cut(s) 471
BstV1I GCAGC 9 cut(s) 67, 88, 89, 118, 200, 224, 227, 514, 542
Bsu36I CCTNAGG 1 cut(s) 255
BtsCI GGATG 1 cut(s) 248
BtsI GCAGTG 2 cut(s) 371, 728
BtsIMutI CAGTG 5 cut(s) 371, 471, 543, 669, 728
BveI ACCTGC 2 cut(s) 319, 631
Cac8I GCNNGC 2 cut(s) 99, 795
CaiI CAGNNNCTG 2 cut(s) 422, 623
Cfr10I RCCGGY 3 cut(s) 73, 97, 688
Csp6I GTAC 3 cut(s) 386, 545, 635
CviAII CATG 1 cut(s) 611
CviQI GTAC 3 cut(s) 386, 545, 635
DdeI CTNAG 5 cut(s) 29, 38, 255, 453, 638
EciI GGCGGA 1 cut(s) 333
Eco32I GATATC 1 cut(s) 750
Eco81I CCTNAGG 1 cut(s) 255
EcoRV GATATC 1 cut(s) 750
FaeI CATG 1 cut(s) 614
FaiI YATR 2 cut(s) 612, 788
FaqI GGGAC 1 cut(s) 269
FatI CATG 1 cut(s) 610
Fnu4HI GCNGC 9 cut(s) 78, 81, 102, 132, 189, 213, 216, 528, 531
FokI GGATG 1 cut(s) 235
Fsp4HI GCNGC 9 cut(s) 78, 81, 102, 132, 189, 213, 216, 528, 531
FspBI CTAG 2 cut(s) 50, 542
GluI GCNGC 9 cut(s) 78, 81, 102, 132, 189, 213, 216, 528, 531
GsaI CCCAGC 2 cut(s) 494, 650
GsuI CTGGAG 1 cut(s) 486
HapII CCGG 4 cut(s) 74, 98, 137, 689
Hin1II CATG 1 cut(s) 614
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HpaII CCGG 4 cut(s) 74, 98, 137, 689
HphI GGTGA 6 cut(s) 171, 237, 345, 354, 465, 690
Hpy166II GTNNAC 3 cut(s) 208, 308, 552
Hpy188III TCNNGA 1 cut(s) 753
Hpy8I GTNNAC 3 cut(s) 208, 308, 552
HpyCH4III ACNGT 4 cut(s) 283, 549, 634, 664
HpyCH4IV ACGT 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 410, 458, 601
HpyF3I CTNAG 5 cut(s) 29, 38, 255, 453, 638
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 1 cut(s) 614
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
LmnI GCTCC 4 cut(s) 424, 505, 562, 568
Lsp1109I GCAGC 9 cut(s) 67, 88, 89, 118, 200, 224, 227, 514, 542
LweI GCATC 2 cut(s) 185, 613
MaeI CTAG 2 cut(s) 50, 542
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 3 cut(s) 243, 664, 763
MfeI CAATTG 3 cut(s) 9, 768, 780
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 5 cut(s) 9, 396, 709, 768, 780
MnlI CCTC 9 cut(s) 97, 325, 390, 481, 573, 594, 670, 713, 737
MroNI GCCGGC 1 cut(s) 97
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 1 cut(s) 609
MspA1I CMGCKG 3 cut(s) 80, 131, 527
MspI CCGG 4 cut(s) 74, 98, 137, 689
MspR9I CCNGG 1 cut(s) 137
MunI CAATTG 3 cut(s) 9, 768, 780
MwoI GCNNNNNNNGC 4 cut(s) 137, 410, 458, 601
NaeI GCCGGC 1 cut(s) 99
NciI CCSGG 1 cut(s) 137
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 1 cut(s) 614
NlaIV GGNNCC 1 cut(s) 693
NmuCI GTSAC 2 cut(s) 243, 664
PaqCI CACCTGC 2 cut(s) 319, 631
PdiI GCCGGC 1 cut(s) 99
PkrI GCNGC 9 cut(s) 79, 82, 103, 133, 190, 214, 217, 529, 532
PspFI CCCAGC 2 cut(s) 490, 646
PspN4I GGNNCC 1 cut(s) 693
PstI CTGCAG 2 cut(s) 190, 532
PstNI CAGNNNCTG 2 cut(s) 422, 623
PvuII CAGCTG 3 cut(s) 80, 131, 527
RsaI GTAC 3 cut(s) 387, 546, 636
RsaNI GTAC 3 cut(s) 386, 545, 635
RseI CAYNNNNRTG 1 cut(s) 609
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 9 cut(s) 78, 81, 102, 132, 189, 213, 216, 528, 531
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 1 cut(s) 471
SfaNI GCATC 2 cut(s) 185, 613
SfcI CTRYAG 3 cut(s) 186, 528, 660
SmiMI CAYNNNNRTG 1 cut(s) 609
SpeI ACTAGT 1 cut(s) 49
Sse9I AATT 5 cut(s) 9, 396, 709, 768, 780
SsiI CCGC 1 cut(s) 344
SspMI CTAG 2 cut(s) 50, 542
StyD4I CCNGG 1 cut(s) 135
TaaI ACNGT 4 cut(s) 283, 549, 634, 664
TaiI ACGT 1 cut(s) 245
TasI AATT 5 cut(s) 9, 396, 709, 768, 780
TatI WGTACW 1 cut(s) 634
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 5 cut(s) 378, 471, 543, 669, 735
TseFI GTSAC 2 cut(s) 243, 664
TseI GCWGC 9 cut(s) 77, 80, 101, 131, 188, 212, 215, 527, 530
Tsp45I GTSAC 2 cut(s) 243, 664
TspRI CASTG 5 cut(s) 378, 471, 543, 669, 735
XapI RAATTY 1 cut(s) 709
XspI CTAG 2 cut(s) 50, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.