Rorug04G0293400

Lysine-rich arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0015270
Physical Location & Seq
Reverse (-)
46747704 .. 46749811
2108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0293400.1

Sequence Viewer

Length: 1032 bp
ATGGATGTCAAACCAGGAAGGGTTTCGGACACCATTAGAAACAGTTCTGAAGAAGACGAAGATGCTATGATGATGGACCTGAGAAGAGGGCCATGGACGGTTGAGGAAGACCTTGCTCTCATGAATTACATTGCTAACCACGGCGAAGGTCGCTGGAACTCCCTTGCTCGCTGTGCAGGTCTGAAAAGAACTGGAAAGAGCTGCAGATTAAGGTGGCTCAACTATCTCCGACCCGACGTTCGACGTGGCAACATCACTCTCGAAGAACAGCTTCTCATTCTTGAGCTTCATTCTCGCTGGGGCAACCGATGGTCCAAAATTGCACAGCACTTGCCCGGAAGGACTGACAATGAAATCAAAAACTACTGGAGGACTCGCGTGCAAAAACACGCAAAGCAGCTCAAGTGTGACGTCAACAGCAAGCAGTTCAAGGACACCATGCGCTACCTCTGGATGCCGAGATTGGTCGAGAGAATTCAAGCCGCCGCGTCCGCCTCCACCGCCACCACCGGAGCCTCTTCTTCTATCACAACCGCCGCGGCCAACACTTATCATTTCAACAATAACAATAACAGCTTCCAAACCGCCGCGGGAGCAGGACACGTCGCTTTACAACAGGCAACGCTCATTGGCAATAACAATGACTTGGCCGGAAGTTACACCACTCCGGAAAACTCCAGCACTGCGGCGTCATCGGACTCGTTTGGGACTCAGGTCTCGCCGGTGTCGGAGCTAACCGACTATTACAGTAATATGTCGGTTAACAATAATAAACCTAGTAGCCAGGCTCTGGATTACTTCCAAGCCACCAATCCTCATCACCAAGTCGGTTATCATGATTCCATGACTAGTCCATCTGGTTACTCATTCAATCAAGGAGGACTAAACAGCCATAGCTTTCAAGCTGCTTCGGCGCCGGAGCAAAACAACAACGGTCAGTGGGGCATGGACGGTGGGGACTTTTCGGACAATCTGTGGAACGTTGAGGAATCCGACATGTGGTTCTTACAGCAGCAACTCGGCAATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

343

Amino Acids

38.37

Weight (kDa)

6.2

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 29 - 76 3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 32 - 89 2.3e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 82 - 125 1.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 86 - 128 4.9e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68725
fragaria_vesca FvH4_4g28430
malus_domestica MD13G1050000.v1.1
prunus_persica Prupe.1G301700_v2.0.a1
pyrus_communis pycom13g04430 pycom16g04470
rosa_chinensis RchiOBHm_Chr4g0436381
rosa_laevigata RLG00000006523
rosa_multiflora Rmu_sc0007205.1_g000001
rosa_roxburghii Rroxscaffold_5G00377550
rosa_rugosa Rorug04G0293400
rosa_samantha Rh4AG347700 Rh4BG356500 Rh4CG371100 Rh4DG350200
rosa_wichuraiana Rw4G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 414
Acc36I ACCTGC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 913
AccB7I CCANNNNNTGG 1 cut(s) 790
AccII CGCG 4 cut(s) 378, 488, 539, 590
AccIII TCCGGA 1 cut(s) 667
AclI AACGTT 1 cut(s) 981
AcoI YGGCCR 2 cut(s) 540, 648
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 1 cut(s) 69
AcyI GRCGYC 3 cut(s) 411, 689, 914
AfiI CCNNNNNNNGG 2 cut(s) 790, 999
AflIII ACRYGT 2 cut(s) 601, 996
AgsI TTSAA 5 cut(s) 430, 479, 559, 871, 902
AhlI ACTAGT 1 cut(s) 848
AjiI CACGTC 2 cut(s) 245, 604
AjnI CCWGG 2 cut(s) 13, 783
AluBI AGCT 8 cut(s) 201, 271, 286, 400, 576, 733, 897, 905
AluI AGCT 8 cut(s) 201, 271, 286, 400, 576, 733, 897, 905
Alw26I GTCTC 1 cut(s) 721
AlwNI CAGNNNCTG 1 cut(s) 790
Aor13HI TCCGGA 1 cut(s) 667
AoxI GGCC 3 cut(s) 89, 540, 648
ApeKI GCWGC 4 cut(s) 201, 397, 905, 1012
ApoI RAATTY 1 cut(s) 474
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
Asp700I GAANNNNTTC 3 cut(s) 22, 43, 270
AspLEI GCGC 2 cut(s) 444, 916
AspS9I GGNCC 3 cut(s) 76, 89, 312
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 812
AvaII GGWCC 2 cut(s) 76, 312
BanI GGYRCC 1 cut(s) 913
BbsI GAAGAC 2 cut(s) 60, 114
BbvI GCAGC 4 cut(s) 188, 409, 892, 1024
BccI CCATC 3 cut(s) 67, 303, 862
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 2 cut(s) 15, 785
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 721
BcuI ACTAGT 1 cut(s) 848
BfaI CTAG 2 cut(s) 777, 849
BfmI CTRYAG 1 cut(s) 202
BfoI RGCGCY 1 cut(s) 917
BfuAI ACCTGC 1 cut(s) 167
Bme1390I CCNGG 3 cut(s) 15, 336, 785
Bme18I GGWCC 2 cut(s) 76, 312
BmgBI CACGTC 2 cut(s) 245, 604
BmgT120I GGNCC 3 cut(s) 76, 89, 312
BmiI GGNNCC 2 cut(s) 514, 915
BmrFI CCNGG 3 cut(s) 15, 336, 785
BmsI GCATC 2 cut(s) 52, 444
BoxI GACNNNNGTC 1 cut(s) 713
BpiI GAAGAC 2 cut(s) 60, 114
BpmI CTGGAG 2 cut(s) 388, 661
BpuEI CTTGAG 2 cut(s) 302, 386
BpuMI CCSGG 1 cut(s) 336
BsaHI GRCGYC 3 cut(s) 411, 689, 914
BsaI GGTCTC 1 cut(s) 721
BsaJI CCNNGG 4 cut(s) 92, 139, 537, 588
BsaWI WCCGGW 2 cut(s) 509, 667
Bsc4I CCNNNNNNNGG 2 cut(s) 790, 999
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 2 cut(s) 196, 371
Bse3DI GCAATG 1 cut(s) 129
BseAI TCCGGA 1 cut(s) 667
BseBI CCWGG 2 cut(s) 15, 785
BseDI CCNNGG 4 cut(s) 92, 139, 537, 588
BseGI GGATG 2 cut(s) 10, 459
BseLI CCNNNNNNNGG 2 cut(s) 790, 999
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 71, 725
BseNI ACTGG 2 cut(s) 196, 371
BseXI GCAGC 4 cut(s) 188, 409, 892, 1024
BseYI CCCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 195
Bsh1236I CGCG 4 cut(s) 378, 488, 539, 590
BshFI GGCC 3 cut(s) 91, 542, 650
BshNI GGYRCC 1 cut(s) 913
BsiSI CCGG 6 cut(s) 336, 510, 651, 668, 722, 917
BslFI GGGAC 2 cut(s) 721, 971
BslI CCNNNNNNNGG 2 cut(s) 790, 999
BsmAI GTCTC 1 cut(s) 721
BsmFI GGGAC 2 cut(s) 721, 971
BsnI GGCC 3 cut(s) 91, 542, 650
Bso31I GGTCTC 1 cut(s) 721
Bsp13I TCCGGA 1 cut(s) 667
Bsp19I CCATGG 1 cut(s) 92
BspANI GGCC 3 cut(s) 91, 542, 650
BspCNI CTCAG 2 cut(s) 72, 724
BspEI TCCGGA 1 cut(s) 667
BspFNI CGCG 4 cut(s) 378, 488, 539, 590
BspHI TCATGA 2 cut(s) 120, 835
BspLI GGNNCC 2 cut(s) 514, 915
BspMAI CTGCAG 1 cut(s) 206
BspMI ACCTGC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 913
BspTNI GGTCTC 1 cut(s) 721
BsrDI GCAATG 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 721
BsrI ACTGG 2 cut(s) 196, 371
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 4 cut(s) 92, 139, 537, 588
BssNI GRCGYC 3 cut(s) 411, 689, 914
BssT1I CCWWGG 1 cut(s) 92
Bst2UI CCWGG 2 cut(s) 15, 785
Bst4CI ACNGT 5 cut(s) 44, 100, 749, 935, 953
Bst6I CTCTTC 2 cut(s) 79, 523
BstACI GRCGYC 3 cut(s) 411, 689, 914
BstC8I GCNNGC 3 cut(s) 169, 380, 422
BstDEI CTNAG 2 cut(s) 80, 711
BstDSI CCRYGG 4 cut(s) 92, 139, 537, 588
BstF5I GGATG 2 cut(s) 10, 459
BstFNI CGCG 4 cut(s) 378, 488, 539, 590
BstH2I RGCGCY 1 cut(s) 917
BstHHI GCGC 2 cut(s) 444, 916
BstMAI GTCTC 1 cut(s) 721
BstMWI GCNNNNNNNGC 6 cut(s) 150, 173, 491, 500, 593, 911
BstNI CCWGG 2 cut(s) 15, 785
BstNSI RCATGY 1 cut(s) 1000
BstPAI GACNNNNGTC 1 cut(s) 713
BstSCI CCNGG 3 cut(s) 13, 334, 783
BstSFI CTRYAG 1 cut(s) 202
BstUI CGCG 4 cut(s) 378, 488, 539, 590
BstV1I GCAGC 4 cut(s) 188, 409, 892, 1024
BstV2I GAAGAC 2 cut(s) 60, 114
BsuRI GGCC 3 cut(s) 91, 542, 650
BtgI CCRYGG 4 cut(s) 92, 139, 537, 588
BtrI CACGTC 2 cut(s) 245, 604
BtsCI GGATG 2 cut(s) 10, 459
BtsI GCAGTG 1 cut(s) 681
BtsIMutI CAGTG 2 cut(s) 681, 944
BveI ACCTGC 1 cut(s) 167
Cac8I GCNNGC 3 cut(s) 169, 380, 422
CaiI CAGNNNCTG 1 cut(s) 790
CciI TCATGA 2 cut(s) 120, 835
CfoI GCGC 2 cut(s) 444, 916
Cfr10I RCCGGY 1 cut(s) 721
Cfr13I GGNCC 3 cut(s) 76, 89, 312
Cfr42I CCGCGG 2 cut(s) 540, 591
CseI GACGC 2 cut(s) 477, 678
CviAII CATG 7 cut(s) 93, 121, 439, 836, 844, 946, 997
DdeI CTNAG 2 cut(s) 80, 711
DinI GGCGCC 1 cut(s) 915
EaeI YGGCCR 2 cut(s) 540, 648
Eam1104I CTCTTC 2 cut(s) 79, 523
EarI CTCTTC 2 cut(s) 79, 523
EciI GGCGGA 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 721
Eco47I GGWCC 2 cut(s) 76, 312
Eco57I CTGAAG 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 474
EcoRII CCWGG 2 cut(s) 13, 783
EcoT14I CCWWGG 1 cut(s) 92
EgeI GGCGCC 1 cut(s) 915
EheI GGCGCC 1 cut(s) 915
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 7 cut(s) 96, 124, 442, 839, 847, 949, 1000
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FaqI GGGAC 2 cut(s) 721, 971
FatI CATG 7 cut(s) 92, 120, 438, 835, 843, 945, 996
FauI CCCGC 1 cut(s) 583
FokI GGATG 2 cut(s) 17, 466
FspBI CTAG 2 cut(s) 777, 849
GlaI GCGC 2 cut(s) 443, 915
GsaI CCCAGC 1 cut(s) 301
GsuI CTGGAG 2 cut(s) 388, 661
HaeII RGCGCY 1 cut(s) 917
HaeIII GGCC 3 cut(s) 91, 542, 650
HapII CCGG 6 cut(s) 336, 510, 651, 668, 722, 917
HgaI GACGC 2 cut(s) 477, 678
HhaI GCGC 2 cut(s) 444, 916
Hin1I GRCGYC 3 cut(s) 411, 689, 914
Hin1II CATG 7 cut(s) 96, 124, 442, 839, 847, 949, 1000
Hin6I GCGC 2 cut(s) 442, 914
HinP1I GCGC 2 cut(s) 442, 914
HincII GTYRAC 2 cut(s) 415, 763
HindII GTYRAC 2 cut(s) 415, 763
HinfI GANTC 5 cut(s) 373, 698, 709, 839, 989
HpaI GTTAAC 1 cut(s) 763
HpaII CCGG 6 cut(s) 336, 510, 651, 668, 722, 917
HphI GGTGA 1 cut(s) 812
Hpy166II GTNNAC 2 cut(s) 415, 763
Hpy188I TCNGA 8 cut(s) 28, 49, 183, 230, 697, 730, 967, 994
Hpy188III TCNNGA 8 cut(s) 121, 260, 281, 451, 469, 668, 791, 836
Hpy8I GTNNAC 2 cut(s) 415, 763
Hpy99I CGWCG 3 cut(s) 239, 246, 608
HpyAV CCTTC 3 cut(s) 12, 140, 333
HpyCH4III ACNGT 5 cut(s) 44, 100, 749, 935, 953
HpyCH4IV ACGT 5 cut(s) 237, 244, 411, 603, 981
HpyCH4V TGCA 4 cut(s) 176, 204, 323, 382
HpyF10VI GCNNNNNNNGC 6 cut(s) 150, 173, 491, 500, 593, 911
HpyF3I CTNAG 2 cut(s) 80, 711
HpySE526I ACGT 5 cut(s) 237, 244, 411, 603, 981
Hsp92I GRCGYC 3 cut(s) 411, 689, 914
Hsp92II CATG 7 cut(s) 96, 124, 442, 839, 847, 949, 1000
HspAI GCGC 2 cut(s) 442, 914
KasI GGCGCC 1 cut(s) 913
Kpn2I TCCGGA 1 cut(s) 667
KspAI GTTAAC 1 cut(s) 763
KspI CCGCGG 2 cut(s) 540, 591
LmnI GCTCC 4 cut(s) 512, 593, 730, 919
Lsp1109I GCAGC 4 cut(s) 188, 409, 892, 1024
LweI GCATC 2 cut(s) 52, 444
MaeI CTAG 2 cut(s) 777, 849
MaeII ACGT 5 cut(s) 237, 244, 411, 603, 981
MaeIII GTNAC 3 cut(s) 407, 656, 860
MboII GAAGA 8 cut(s) 62, 65, 71, 96, 119, 275, 510, 513
MluCI AATT 3 cut(s) 124, 318, 474
Mly113I GGCGCC 1 cut(s) 914
MlyI GAGTC 3 cut(s) 367, 692, 703
MmeI TCCRAC 3 cut(s) 253, 708, 1017
MnlI CCTC 9 cut(s) 80, 97, 363, 458, 505, 526, 825, 872, 979
MroI TCCGGA 1 cut(s) 667
MroXI GAANNNNTTC 3 cut(s) 22, 43, 270
MseI TTAA 2 cut(s) 209, 762
MspA1I CMGCKG 2 cut(s) 539, 590
MspI CCGG 6 cut(s) 336, 510, 651, 668, 722, 917
MspR9I CCNGG 3 cut(s) 15, 336, 785
MvaI CCWGG 2 cut(s) 15, 785
MvnI CGCG 4 cut(s) 378, 488, 539, 590
MwoI GCNNNNNNNGC 6 cut(s) 150, 173, 491, 500, 593, 911
NarI GGCGCC 1 cut(s) 914
NciI CCSGG 1 cut(s) 336
NcoI CCATGG 1 cut(s) 92
NlaIII CATG 7 cut(s) 96, 124, 442, 839, 847, 949, 1000
NlaIV GGNNCC 2 cut(s) 514, 915
NmeAIII GCCGAG 2 cut(s) 483, 999
NmuCI GTSAC 1 cut(s) 407
NspI RCATGY 1 cut(s) 1000
PagI TCATGA 2 cut(s) 120, 835
PciI ACATGT 1 cut(s) 996
PdmI GAANNNNTTC 3 cut(s) 22, 43, 270
PfeI GAWTC 2 cut(s) 839, 989
PflMI CCANNNNNTGG 1 cut(s) 790
PleI GAGTC 3 cut(s) 367, 692, 703
PluTI GGCGCC 1 cut(s) 917
PpsI GAGTC 3 cut(s) 367, 692, 703
PscI ACATGT 1 cut(s) 996
PshAI GACNNNNGTC 1 cut(s) 713
Psp1406I AACGTT 1 cut(s) 981
Psp6I CCWGG 2 cut(s) 13, 783
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 2 cut(s) 13, 783
PspN4I GGNNCC 2 cut(s) 514, 915
PspPI GGNCC 3 cut(s) 76, 89, 312
PstI CTGCAG 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 790
SacII CCGCGG 2 cut(s) 540, 591
SaqAI TTAA 2 cut(s) 209, 762
Sau96I GGNCC 3 cut(s) 76, 89, 312
SchI GAGTC 3 cut(s) 367, 692, 703
ScrFI CCNGG 3 cut(s) 15, 336, 785
SfaNI GCATC 2 cut(s) 52, 444
SfcI CTRYAG 1 cut(s) 202
SfoI GGCGCC 1 cut(s) 915
Sfr303I CCGCGG 2 cut(s) 540, 591
SgrAI CRCCGGYG 1 cut(s) 721
SgrBI CCGCGG 2 cut(s) 540, 591
SinI GGWCC 2 cut(s) 76, 312
SmlI CTYRAG 2 cut(s) 281, 401
SmoI CTYRAG 2 cut(s) 281, 401
SpeI ACTAGT 1 cut(s) 848
Sse9I AATT 3 cut(s) 124, 318, 474
SspDI GGCGCC 1 cut(s) 913
SspI AATATT 1 cut(s) 1027
SspMI CTAG 2 cut(s) 777, 849
StyD4I CCNGG 3 cut(s) 13, 334, 783
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 5 cut(s) 44, 100, 749, 935, 953
TaiI ACGT 5 cut(s) 240, 247, 414, 606, 984
TaqI TCGA 3 cut(s) 241, 261, 468
TasI AATT 3 cut(s) 124, 318, 474
TauI GCSGC 6 cut(s) 485, 488, 539, 542, 590, 689
TfiI GAWTC 2 cut(s) 839, 989
Tru1I TTAA 2 cut(s) 209, 762
Tru9I TTAA 2 cut(s) 209, 762
TscAI CASTG 2 cut(s) 688, 944
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 4 cut(s) 201, 397, 905, 1012
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 3 cut(s) 137, 278, 366
TspRI CASTG 2 cut(s) 688, 944
Van91I CCANNNNNTGG 1 cut(s) 790
VpaK11BI GGWCC 2 cut(s) 76, 312
XapI RAATTY 1 cut(s) 474
XceI RCATGY 1 cut(s) 1000
XmnI GAANNNNTTC 3 cut(s) 22, 43, 270
XspI CTAG 2 cut(s) 777, 849
ZraI GACGTC 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.