pycom13g04430

Lysine-rich arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0015270
Physical Location & Seq
Reverse (-)
3009355 .. 3010302
948 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g04430.1

Sequence Viewer

Length: 816 bp
ATGGTTTCGATTTTGCTGGCTTTCGTTCTATGTTGCCTCAGCTTTCAAGTAATCCTTACCGGTGCACAGACACCGGCAGCCGCACCCTCTACTTTGCCAGCTGCAACGCCCCCACCTACTACCACACCTGCTGCACCGGCTACTCTGCCGACTACAACCCCACCACCTTCTACTGCACCAACAGCAGTAACACAACCGCCTGTAAATGCAGCACCAACCCCACCAACCACCACACCTGCATCACCTTCCCCTAAGGTAGCACCATCCAAAAGCCCAGCAGTCCCACCCCCGCTACCCCAAAGTCCACCTGTGTCAACTCCATCACAGCCACCGAATCCGCCGCCATCACCACCTGTTTCGACACCAACATTGCCACCTCCTGTAGCAGCGCCACCTGCATCTCCAACACCAGTTCAAGCCCCAGCTCCTGTTAAAGCAACTCCTGCACCGGCACCAGCTAAAGTAGCACCAGTGCCCTCACCATCAAAAGCACCCCCAGTATCAGCGCCAGCACCAGTTATTGTGCCACCAGCTTCACAACCAGTGCAAGCACCTTCACCTGCTCCACCCAAACACAAGGGGAAGCACAAGCACAAGCACAAGCACAAGCATCATCATGCACCAGCACCTGCACCAACTGTACAAAGTCCCCCAGCACCACCTACGGTGACAGATACAGAGGACGGTGCAACACCGGCCCCATCACCAAGTTTGAATTTGAATGGAGGAAATGCACTCCACCAGAAAGGAGGGATATCAGGATTCTGGGTTACGATCGAGTTAGCAATCACTATACTGCTGGCAAAGACAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

26.75

Weight (kDa)

10.02

Isoelectric Point (pI)

100.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68725
fragaria_vesca FvH4_4g28430
malus_domestica MD13G1050000.v1.1
prunus_persica Prupe.1G301700_v2.0.a1
pyrus_communis pycom13g04430 pycom16g04470
rosa_chinensis RchiOBHm_Chr4g0436381
rosa_laevigata RLG00000006523
rosa_multiflora Rmu_sc0007205.1_g000001
rosa_roxburghii Rroxscaffold_5G00377550
rosa_rugosa Rorug04G0293400
rosa_samantha Rh4AG347700 Rh4BG356500 Rh4CG371100 Rh4DG350200
rosa_wichuraiana Rw4G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 5 cut(s) 136, 244, 403, 568, 637
Acc36I ACCTGC 5 cut(s) 136, 244, 403, 568, 637
AccB1I GGYRCC 1 cut(s) 451
AciI CCGC 5 cut(s) 81, 197, 290, 338, 341
AcsI RAATTY 1 cut(s) 715
AfaI GTAC 1 cut(s) 642
AgeI ACCGGT 1 cut(s) 59
AgsI TTSAA 4 cut(s) 47, 416, 715, 721
AluBI AGCT 5 cut(s) 42, 101, 425, 458, 533
AluI AGCT 5 cut(s) 42, 101, 425, 458, 533
Alw21I GWGCWC 1 cut(s) 67
Alw44I GTGCAC 1 cut(s) 63
AlwNI CAGNNNCTG 2 cut(s) 428, 629
AoxI GGCC 1 cut(s) 696
ApaLI GTGCAC 1 cut(s) 63
ApeKI GCWGC 5 cut(s) 77, 101, 131, 209, 386
ApoI RAATTY 1 cut(s) 715
AsiGI ACCGGT 1 cut(s) 59
AspLEI GCGC 2 cut(s) 391, 508
AspS9I GGNCC 1 cut(s) 697
AsuHPI GGTGA 6 cut(s) 234, 339, 471, 549, 679, 696
AxyI CCTNAGG 1 cut(s) 252
BaeGI GKGCMC 2 cut(s) 67, 477
BanI GGYRCC 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 67
BbvCI CCTCAGC 1 cut(s) 38
BbvI GCAGC 5 cut(s) 88, 89, 118, 221, 398
BccI CCATC 5 cut(s) 271, 328, 352, 490, 709
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 2 cut(s) 392, 509
BfuAI ACCTGC 5 cut(s) 136, 244, 403, 568, 637
BisI GCNGC 7 cut(s) 78, 81, 102, 132, 210, 341, 387
BlsI GCNGC 7 cut(s) 79, 82, 103, 133, 211, 342, 388
BmgT120I GGNCC 1 cut(s) 697
BmiI GGNNCC 2 cut(s) 453, 699
BmrI ACTGGG 1 cut(s) 491
BmsI GCATC 3 cut(s) 248, 407, 619
BmuI ACTGGG 1 cut(s) 491
Bpu10I CCTNAGC 1 cut(s) 38
BsaWI WCCGGW 1 cut(s) 59
Bse118I RCCGGY 5 cut(s) 59, 73, 136, 448, 694
Bse1I ACTGG 5 cut(s) 410, 470, 497, 515, 542
Bse21I CCTNAGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 368
BseGI GGATG 1 cut(s) 263
BseMI GCAATG 1 cut(s) 368
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 5 cut(s) 410, 470, 497, 515, 542
BseSI GKGCMC 2 cut(s) 67, 477
BseXI GCAGC 5 cut(s) 88, 89, 118, 221, 398
BseYI CCCAGC 3 cut(s) 274, 421, 652
BsgI GTGCAG 4 cut(s) 117, 159, 429, 615
Bsh1285I CGRYCG 1 cut(s) 777
BshFI GGCC 1 cut(s) 698
BshNI GGYRCC 1 cut(s) 451
BshTI ACCGGT 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 777
BsiHKAI GWGCWC 1 cut(s) 67
BsiSI CCGG 5 cut(s) 60, 74, 137, 449, 695
BslFI GGGAC 2 cut(s) 266, 633
BsmFI GGGAC 2 cut(s) 266, 633
BsnI GGCC 1 cut(s) 698
Bsp1286I GDGCHC 2 cut(s) 67, 477
Bsp1407I TGTACA 1 cut(s) 640
Bsp143I GATC 1 cut(s) 774
BspACI CCGC 5 cut(s) 81, 197, 290, 338, 341
BspANI GGCC 1 cut(s) 698
BspCNI CTCAG 1 cut(s) 51
BspLI GGNNCC 2 cut(s) 453, 699
BspMI ACCTGC 5 cut(s) 136, 244, 403, 568, 637
BspT107I GGYRCC 1 cut(s) 451
BsrDI GCAATG 1 cut(s) 368
BsrFI RCCGGY 5 cut(s) 59, 73, 136, 448, 694
BsrGI TGTACA 1 cut(s) 640
BsrI ACTGG 5 cut(s) 410, 470, 497, 515, 542
BssAI RCCGGY 5 cut(s) 59, 73, 136, 448, 694
BssMI GATC 1 cut(s) 774
Bst4CI ACNGT 3 cut(s) 640, 667, 686
BstAPI GCANNNNNTGC 1 cut(s) 443
BstAUI TGTACA 1 cut(s) 640
BstC8I GCNNGC 5 cut(s) 18, 99, 510, 549, 801
BstDEI CTNAG 2 cut(s) 38, 252
BstF5I GGATG 1 cut(s) 263
BstH2I RGCGCY 2 cut(s) 392, 509
BstHHI GCGC 2 cut(s) 391, 508
BstKTI GATC 1 cut(s) 777
BstMBI GATC 1 cut(s) 774
BstMCI CGRYCG 1 cut(s) 777
BstMWI GCNNNNNNNGC 6 cut(s) 137, 182, 395, 443, 464, 695
BstSFI CTRYAG 1 cut(s) 381
BstSLI GKGCMC 2 cut(s) 67, 477
BstV1I GCAGC 5 cut(s) 88, 89, 118, 221, 398
Bsu36I CCTNAGG 1 cut(s) 252
BsuRI GGCC 1 cut(s) 698
BtsCI GGATG 1 cut(s) 263
BtsIMutI CAGTG 2 cut(s) 477, 549
BveI ACCTGC 5 cut(s) 136, 244, 403, 568, 637
Cac8I GCNNGC 5 cut(s) 18, 99, 510, 549, 801
CaiI CAGNNNCTG 2 cut(s) 428, 629
CfoI GCGC 2 cut(s) 391, 508
Cfr10I RCCGGY 5 cut(s) 59, 73, 136, 448, 694
Cfr13I GGNCC 1 cut(s) 697
Csp6I GTAC 1 cut(s) 641
CspAI ACCGGT 1 cut(s) 59
CviAII CATG 1 cut(s) 617
CviQI GTAC 1 cut(s) 641
DdeI CTNAG 2 cut(s) 38, 252
DpnI GATC 1 cut(s) 776
DpnII GATC 1 cut(s) 774
EciI GGCGGA 1 cut(s) 327
Eco32I GATATC 1 cut(s) 756
Eco81I CCTNAGG 1 cut(s) 252
EcoRV GATATC 1 cut(s) 756
FaeI CATG 1 cut(s) 620
FaiI YATR 3 cut(s) 31, 618, 794
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FaqI GGGAC 2 cut(s) 266, 633
FatI CATG 1 cut(s) 616
FauI CCCGC 1 cut(s) 297
Fnu4HI GCNGC 7 cut(s) 78, 81, 102, 132, 210, 341, 387
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 7 cut(s) 78, 81, 102, 132, 210, 341, 387
GlaI GCGC 2 cut(s) 390, 507
GluI GCNGC 7 cut(s) 78, 81, 102, 132, 210, 341, 387
GsaI CCCAGC 3 cut(s) 278, 425, 656
HaeII RGCGCY 2 cut(s) 392, 509
HaeIII GGCC 1 cut(s) 698
HapII CCGG 5 cut(s) 60, 74, 137, 449, 695
HhaI GCGC 2 cut(s) 391, 508
Hin1II CATG 1 cut(s) 620
Hin6I GCGC 2 cut(s) 389, 506
HinP1I GCGC 2 cut(s) 389, 506
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HinfI GANTC 2 cut(s) 334, 762
HpaII CCGG 5 cut(s) 60, 74, 137, 449, 695
HphI GGTGA 6 cut(s) 234, 339, 471, 549, 679, 696
Hpy166II GTNNAC 3 cut(s) 65, 305, 315
Hpy188III TCNNGA 1 cut(s) 759
Hpy8I GTNNAC 3 cut(s) 65, 305, 315
HpyAV CCTTC 3 cut(s) 177, 255, 564
HpyCH4III ACNGT 3 cut(s) 640, 667, 686
HpyF10VI GCNNNNNNNGC 6 cut(s) 137, 182, 395, 443, 464, 695
HpyF3I CTNAG 2 cut(s) 38, 252
Hsp92II CATG 1 cut(s) 620
HspAI GCGC 2 cut(s) 389, 506
Kzo9I GATC 1 cut(s) 774
LmnI GCTCC 2 cut(s) 430, 568
Lsp1109I GCAGC 5 cut(s) 88, 89, 118, 221, 398
LweI GCATC 3 cut(s) 248, 407, 619
MaeIII GTNAC 3 cut(s) 187, 667, 769
MalI GATC 1 cut(s) 776
MboI GATC 1 cut(s) 774
MhlI GDGCHC 2 cut(s) 67, 477
MluCI AATT 1 cut(s) 715
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 7 cut(s) 47, 97, 387, 487, 673, 719, 743
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 615
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 5 cut(s) 60, 74, 137, 449, 695
MwoI GCNNNNNNNGC 6 cut(s) 137, 182, 395, 443, 464, 695
NdeII GATC 1 cut(s) 774
NlaIII CATG 1 cut(s) 620
NlaIV GGNNCC 2 cut(s) 453, 699
NmuCI GTSAC 1 cut(s) 667
PaqCI CACCTGC 5 cut(s) 136, 244, 403, 568, 637
PfeI GAWTC 2 cut(s) 334, 762
PinAI ACCGGT 1 cut(s) 59
PkrI GCNGC 7 cut(s) 79, 82, 103, 133, 211, 342, 388
Ple19I CGATCG 1 cut(s) 777
PspFI CCCAGC 3 cut(s) 274, 421, 652
PspN4I GGNNCC 2 cut(s) 453, 699
PspPI GGNCC 1 cut(s) 697
PstNI CAGNNNCTG 2 cut(s) 428, 629
PvuI CGATCG 1 cut(s) 777
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
RseI CAYNNNNRTG 1 cut(s) 615
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 7 cut(s) 78, 81, 102, 132, 210, 341, 387
Sau3AI GATC 1 cut(s) 774
Sau96I GGNCC 1 cut(s) 697
SduI GDGCHC 2 cut(s) 67, 477
SfaNI GCATC 3 cut(s) 248, 407, 619
SfcI CTRYAG 1 cut(s) 381
SmiMI CAYNNNNRTG 1 cut(s) 615
Sse9I AATT 1 cut(s) 715
SsiI CCGC 5 cut(s) 81, 197, 290, 338, 341
TaaI ACNGT 3 cut(s) 640, 667, 686
TaqI TCGA 3 cut(s) 8, 359, 777
TasI AATT 1 cut(s) 715
TatI WGTACW 1 cut(s) 640
TauI GCSGC 2 cut(s) 83, 343
TfiI GAWTC 2 cut(s) 334, 762
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 2 cut(s) 477, 549
TseFI GTSAC 1 cut(s) 667
TseI GCWGC 5 cut(s) 77, 101, 131, 209, 386
Tsp45I GTSAC 1 cut(s) 667
TspRI CASTG 2 cut(s) 477, 549
VneI GTGCAC 1 cut(s) 63
XapI RAATTY 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.