RchiOBHm_Chr4g0436381

Lysine-rich arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015270
Physical Location & Seq
Reverse (-)
59675973 .. 59677609
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40471

Sequence Viewer

Length: 768 bp
ATGGCTTCGACTCTGATGGCCCTGGTTTTGACCTGTCTCACCTTTCAACTAGTCCTTACCAATGCACAAACACCAGCAGCTGCACCCACTACGGCTACAACACCGCCACCACCTACCACACCGATTGCACCAGCTGCGCAACCACCGACTGCTGTAACACCACCCCCTGTAACCCCACCCACAACCCCGCCAACAACATCACCACCCCCTAAAGTTGCACCATCCACAAGCCCGACATTCCCACCCCCAAAAACTCCACCAAAGATTTCACCTGTCTCAACTCCATCTCAGCCACCAACACTGCCACCACCACCACCACCAGTTGTTTCACCACCACTACCACCTCCACAAGTAGCACCACAGGTATCCCCAACCCCAGCTCCTGTTAAGAAACCGCCGGCGCCAGCACCAGCCAAGGCAGCACCAGTGCCCTCACCATCACAAGCACCGCCAGTATCAGCGCCAACACCAGTTGTCGCGGAACCAGCTCCAGCCCCTGTGGAAGTGCCGTCACCTGCACCTGCTCCACATAAACACAAGAAAAGGAAGCACAAGCACAGGAGGCATCATCATGCACCAGCACCGGCGCCAACTGTCCAAAGTCCCCCAGCCCCACCTATAGTGACAGATACAGAGGATACAACACCAGCACCATCACCAACTTTGGATTTGAGCGGAGGAAATGCACTGCACCAGAAAGGAGCAAAGTCTGCTATTTGGATTACGACTGGATTAGCTATTGCTATACTGCTGGCAATGACAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

25.65

Weight (kDa)

10.21

Isoelectric Point (pI)

97.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68725
fragaria_vesca FvH4_4g28430
malus_domestica MD13G1050000.v1.1
prunus_persica Prupe.1G301700_v2.0.a1
pyrus_communis pycom13g04430 pycom16g04470
rosa_chinensis RchiOBHm_Chr4g0436381
rosa_laevigata RLG00000006523
rosa_multiflora Rmu_sc0007205.1_g000001
rosa_roxburghii Rroxscaffold_5G00377550
rosa_rugosa Rorug04G0293400
rosa_samantha Rh4AG347700 Rh4BG356500 Rh4CG371100 Rh4DG350200
rosa_wichuraiana Rw4G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 523, 529
Acc16I TGCGCA 1 cut(s) 138
Acc36I ACCTGC 2 cut(s) 523, 529
AccB1I GGYRCC 2 cut(s) 400, 586
AccBSI CCGCTC 1 cut(s) 675
AccII CGCG 1 cut(s) 479
AciI CCGC 6 cut(s) 104, 188, 395, 449, 479, 675
AcyI GRCGYC 2 cut(s) 401, 587
AgsI TTSAA 1 cut(s) 47
AhlI ACTAGT 1 cut(s) 49
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 6 cut(s) 80, 134, 380, 488, 737, 765
AluI AGCT 6 cut(s) 80, 134, 380, 488, 737, 765
Alw26I GTCTC 2 cut(s) 41, 280
AlwNI CAGNNNCTG 3 cut(s) 80, 383, 497
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 4 cut(s) 77, 80, 134, 419
AspLEI GCGC 4 cut(s) 139, 403, 463, 589
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 7 cut(s) 31, 192, 261, 321, 426, 504, 648
BaeGI GKGCMC 1 cut(s) 432
BanI GGYRCC 2 cut(s) 400, 586
BbvI GCAGC 4 cut(s) 67, 89, 121, 431
BccI CCATC 5 cut(s) 10, 229, 292, 445, 661
BceAI ACGGC 2 cut(s) 108, 493
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 2 cut(s) 376, 631
BcoDI GTCTC 2 cut(s) 41, 280
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 2 cut(s) 50, 766
BfmI CTRYAG 1 cut(s) 618
BfoI RGCGCY 3 cut(s) 404, 464, 590
BfuAI ACCTGC 2 cut(s) 523, 529
BfuI GTATCC 2 cut(s) 376, 631
BisI GCNGC 4 cut(s) 78, 81, 135, 420
BlsI GCNGC 4 cut(s) 79, 82, 136, 421
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 3 cut(s) 402, 483, 588
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 574
BpmI CTGGAG 1 cut(s) 474
BsaHI GRCGYC 2 cut(s) 401, 587
BsaJI CCNNGG 2 cut(s) 21, 414
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bse118I RCCGGY 2 cut(s) 397, 583
Bse1I ACTGG 5 cut(s) 320, 425, 452, 470, 733
Bse3DI GCAATG 1 cut(s) 762
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 21, 414
BseGI GGATG 1 cut(s) 221
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 5 cut(s) 320, 425, 452, 470, 733
BseSI GKGCMC 1 cut(s) 432
BseXI GCAGC 4 cut(s) 67, 89, 121, 431
BseYI CCCAGC 2 cut(s) 376, 607
BsgI GTGCAG 3 cut(s) 66, 501, 674
Bsh1236I CGCG 1 cut(s) 479
BshFI GGCC 1 cut(s) 20
BshNI GGYRCC 2 cut(s) 400, 586
BsiSI CCGG 2 cut(s) 398, 584
BslFI GGGAC 1 cut(s) 588
BsmAI GTCTC 2 cut(s) 41, 280
BsmFI GGGAC 1 cut(s) 588
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 432
BspACI CCGC 6 cut(s) 104, 188, 395, 449, 479, 675
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 301
BspFNI CGCG 1 cut(s) 479
BspLI GGNNCC 3 cut(s) 402, 483, 588
BspMI ACCTGC 2 cut(s) 523, 529
BspT107I GGYRCC 2 cut(s) 400, 586
BsrBI CCGCTC 1 cut(s) 675
BsrDI GCAATG 1 cut(s) 762
BsrFI RCCGGY 2 cut(s) 397, 583
BsrI ACTGG 5 cut(s) 320, 425, 452, 470, 733
BssAI RCCGGY 2 cut(s) 397, 583
BssECI CCNNGG 2 cut(s) 21, 414
BssNI GRCGYC 2 cut(s) 401, 587
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 595
BstACI GRCGYC 2 cut(s) 401, 587
BstAPI GCANNNNNTGC 2 cut(s) 134, 710
BstC8I GCNNGC 3 cut(s) 399, 405, 753
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 221
BstFNI CGCG 1 cut(s) 479
BstH2I RGCGCY 3 cut(s) 404, 464, 590
BstHHI GCGC 4 cut(s) 139, 403, 463, 589
BstMAI GTCTC 2 cut(s) 41, 280
BstMWI GCNNNNNNNGC 5 cut(s) 134, 419, 485, 562, 710
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 618
BstSLI GKGCMC 1 cut(s) 432
BstUI CGCG 1 cut(s) 479
BstV1I GCAGC 4 cut(s) 67, 89, 121, 431
BsuI GTATCC 2 cut(s) 376, 631
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 221
BtsI GCAGTG 2 cut(s) 299, 686
BtsIMutI CAGTG 3 cut(s) 299, 432, 686
BveI ACCTGC 2 cut(s) 523, 529
Cac8I GCNNGC 3 cut(s) 399, 405, 753
CaiI CAGNNNCTG 3 cut(s) 80, 383, 497
CfoI GCGC 4 cut(s) 139, 403, 463, 589
Cfr10I RCCGGY 2 cut(s) 397, 583
Cfr13I GGNCC 1 cut(s) 19
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviAII CATG 1 cut(s) 572
DdeI CTNAG 1 cut(s) 288
DinI GGCGCC 2 cut(s) 402, 588
Eco130I CCWWGG 1 cut(s) 414
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 414
EgeI GGCGCC 2 cut(s) 402, 588
EheI GGCGCC 2 cut(s) 402, 588
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 1 cut(s) 575
FaiI YATR 4 cut(s) 531, 573, 620, 746
FaqI GGGAC 1 cut(s) 588
FatI CATG 1 cut(s) 571
FauI CCCGC 1 cut(s) 195
Fnu4HI GCNGC 4 cut(s) 78, 81, 135, 420
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 4 cut(s) 78, 81, 135, 420
FspBI CTAG 2 cut(s) 50, 766
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 4 cut(s) 138, 402, 462, 588
GluI GCNGC 4 cut(s) 78, 81, 135, 420
GsaI CCCAGC 2 cut(s) 380, 611
GsuI CTGGAG 1 cut(s) 474
HaeII RGCGCY 3 cut(s) 404, 464, 590
HaeIII GGCC 1 cut(s) 20
HapII CCGG 2 cut(s) 398, 584
HhaI GCGC 4 cut(s) 139, 403, 463, 589
Hin1I GRCGYC 2 cut(s) 401, 587
Hin1II CATG 1 cut(s) 575
Hin6I GCGC 4 cut(s) 137, 401, 461, 587
HinP1I GCGC 4 cut(s) 137, 401, 461, 587
HinfI GANTC 1 cut(s) 10
HpaII CCGG 2 cut(s) 398, 584
HphI GGTGA 7 cut(s) 31, 192, 261, 321, 426, 504, 648
Hpy188I TCNGA 1 cut(s) 15
HpyCH4III ACNGT 1 cut(s) 595
HpyCH4V TGCA 8 cut(s) 65, 83, 128, 218, 518, 575, 686, 691
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 419, 485, 562, 710
HpyF3I CTNAG 1 cut(s) 288
Hsp92I GRCGYC 2 cut(s) 401, 587
Hsp92II CATG 1 cut(s) 575
HspAI GCGC 4 cut(s) 137, 401, 461, 587
KasI GGCGCC 2 cut(s) 400, 586
KroI GCCGGC 1 cut(s) 397
KroNI GCCGGC 1 cut(s) 399
LmnI GCTCC 4 cut(s) 385, 493, 529, 701
Lsp1109I GCAGC 4 cut(s) 67, 89, 121, 431
LweI GCATC 1 cut(s) 574
MaeI CTAG 2 cut(s) 50, 766
MaeIII GTNAC 4 cut(s) 154, 169, 510, 622
MbiI CCGCTC 1 cut(s) 675
MhlI GDGCHC 1 cut(s) 432
Mly113I GGCGCC 2 cut(s) 401, 587
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 5 cut(s) 354, 442, 555, 628, 671
MreI CGCCGGCG 1 cut(s) 397
MroNI GCCGGC 1 cut(s) 397
MseI TTAA 1 cut(s) 387
MslI CAYNNNNRTG 1 cut(s) 570
MspA1I CMGCKG 2 cut(s) 80, 134
MspI CCGG 2 cut(s) 398, 584
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 1 cut(s) 479
MwoI GCNNNNNNNGC 5 cut(s) 134, 419, 485, 562, 710
NaeI GCCGGC 1 cut(s) 399
NarI GGCGCC 2 cut(s) 401, 587
NgoMIV GCCGGC 1 cut(s) 397
NlaIII CATG 1 cut(s) 575
NlaIV GGNNCC 3 cut(s) 402, 483, 588
NmuCI GTSAC 2 cut(s) 510, 622
NsbI TGCGCA 1 cut(s) 138
PaqCI CACCTGC 2 cut(s) 523, 529
PdiI GCCGGC 1 cut(s) 399
PkrI GCNGC 4 cut(s) 79, 82, 136, 421
PleI GAGTC 1 cut(s) 4
PluTI GGCGCC 2 cut(s) 404, 590
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 2 cut(s) 376, 607
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 3 cut(s) 402, 483, 588
PspPI GGNCC 1 cut(s) 19
PstNI CAGNNNCTG 3 cut(s) 80, 383, 497
PvuII CAGCTG 2 cut(s) 80, 134
RseI CAYNNNNRTG 1 cut(s) 570
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 4 cut(s) 78, 81, 135, 420
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 432
SfaNI GCATC 1 cut(s) 574
SfcI CTRYAG 1 cut(s) 618
SfoI GGCGCC 2 cut(s) 402, 588
SgrAI CRCCGGYG 2 cut(s) 397, 583
SmiMI CAYNNNNRTG 1 cut(s) 570
SpeI ACTAGT 1 cut(s) 49
SsiI CCGC 6 cut(s) 104, 188, 395, 449, 479, 675
SspDI GGCGCC 2 cut(s) 400, 586
SspMI CTAG 2 cut(s) 50, 766
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 1 cut(s) 595
TaqI TCGA 1 cut(s) 8
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 3 cut(s) 306, 432, 693
TseFI GTSAC 2 cut(s) 510, 622
TseI GCWGC 4 cut(s) 77, 80, 134, 419
Tsp45I GTSAC 2 cut(s) 510, 622
TspRI CASTG 3 cut(s) 306, 432, 693
XspI CTAG 2 cut(s) 50, 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.