MD13G1050000.v1.1

Lysine-rich arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0015270
Physical Location & Seq
Reverse (-)
3549796 .. 3551119
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1050000.v1.1.491

Sequence Viewer

Length: 849 bp
ATGCTGTTCCCTGGAATTCGTCTTCCAAAAATGGTTTCGATTTTGCTGGCTTTCGTCCTATGTTGCCTCAGCTTTCAAGTAATCCTTACCGGTGCACAGACACCGGCAGCCGCACCCTCTACTTTGCCAGCTGCAACGCCCCCGCCTACTACCACACCTGCTGCACCGGCTACTCTGCCGACTACAACCCCACCACCTTCTACCGCACCAACCGCAGTAACACAACCGCCTGTAAATGCAGCAGCAACCCCACCAATCACCACACCCGCATCACCTTCCCCTAAGGTAGCACCATCCAAAAGCCCAGCAGTCCCACCCCCGCTACCCCAAAGTCCACCTGTGTCAACTCCATCACAGCCACCGAATCTGCCGCCATCACCACCTGTTTCGACACCAACATTGCCGCCTCCTGTAGCGGCGCCACCTGCATCTCCAACACCAGTTCAAGCCCCAGCCCCTGTTAAAGCAACTCCTGCACCGGCACCAGCTAAAGTAGCACCAGTGCCCTCACCATTAAAAGCACCCCCAGTATCCGCGCCAGCACCGGTTATTGTGCCACCAGCTTCACAACCAGTGCAAGCACCATCACCTGCTCCACCCAACCACAAGGGGAAGAACAAGCACAAGCACAAGCACAAGCATCATCATCATGCACCAGCACCTGCACCAACTGTACAAAGTCCCCCAGCACCACCTACGGTGACAGATACAGAGGACGATACAACACCGGCCCCATCACCAAGTTTGAATTTGAATGGAGGAAATGCACTCCACCAGAAAGGAGGGATATCAGGATTCTGGGTTACGATCGGGTTAGCAATCACTATACTGCTGGCAAAGACAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

28.04

Weight (kDa)

10.14

Isoelectric Point (pI)

95.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68725
fragaria_vesca FvH4_4g28430
malus_domestica MD13G1050000.v1.1
prunus_persica Prupe.1G301700_v2.0.a1
pyrus_communis pycom13g04430 pycom16g04470
rosa_chinensis RchiOBHm_Chr4g0436381
rosa_laevigata RLG00000006523
rosa_multiflora Rmu_sc0007205.1_g000001
rosa_roxburghii Rroxscaffold_5G00377550
rosa_rugosa Rorug04G0293400
rosa_samantha Rh4AG347700 Rh4BG356500 Rh4CG371100 Rh4DG350200
rosa_wichuraiana Rw4G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 4 cut(s) 166, 433, 598, 670
Acc36I ACCTGC 4 cut(s) 166, 433, 598, 670
AccB1I GGYRCC 2 cut(s) 418, 481
AccII CGCG 1 cut(s) 536
AcsI RAATTY 2 cut(s) 15, 748
AcyI GRCGYC 1 cut(s) 419
AfaI GTAC 1 cut(s) 675
AgeI ACCGGT 2 cut(s) 89, 544
AgsI TTSAA 4 cut(s) 77, 446, 748, 754
AjnI CCWGG 1 cut(s) 10
AjuI GAANNNNNNNTTGG 2 cut(s) 19, 51
AluBI AGCT 4 cut(s) 72, 131, 488, 563
AluI AGCT 4 cut(s) 72, 131, 488, 563
Alw21I GWGCWC 1 cut(s) 97
Alw44I GTGCAC 1 cut(s) 93
AlwNI CAGNNNCTG 2 cut(s) 458, 662
AoxI GGCC 1 cut(s) 729
ApaLI GTGCAC 1 cut(s) 93
ApeKI GCWGC 5 cut(s) 107, 131, 161, 239, 242
ApoI RAATTY 2 cut(s) 15, 748
AsiGI ACCGGT 2 cut(s) 89, 544
AspLEI GCGC 2 cut(s) 421, 538
AspS9I GGNCC 1 cut(s) 730
AsuHPI GGTGA 7 cut(s) 250, 264, 369, 501, 579, 712, 729
AxyI CCTNAGG 1 cut(s) 282
BaeGI GKGCMC 2 cut(s) 97, 507
BanI GGYRCC 2 cut(s) 418, 481
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 97
BbvCI CCTCAGC 1 cut(s) 68
BbvI GCAGC 5 cut(s) 118, 119, 148, 251, 254
BccI CCATC 5 cut(s) 301, 358, 382, 592, 742
BciT130I CCWGG 1 cut(s) 12
BciVI GTATCC 1 cut(s) 541
BfmI CTRYAG 1 cut(s) 411
BfoI RGCGCY 1 cut(s) 422
BfuAI ACCTGC 4 cut(s) 166, 433, 598, 670
BfuI GTATCC 1 cut(s) 541
BisI GCNGC 9 cut(s) 108, 111, 132, 162, 240, 243, 371, 404, 417
BlsI GCNGC 9 cut(s) 109, 112, 133, 163, 241, 244, 372, 405, 418
Bme1390I CCNGG 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 730
BmiI GGNNCC 3 cut(s) 420, 483, 732
BmrFI CCNGG 1 cut(s) 12
BmrI ACTGGG 1 cut(s) 521
BmsI GCATC 3 cut(s) 278, 437, 649
BmuI ACTGGG 1 cut(s) 521
BpiI GAAGAC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 2 cut(s) 89, 544
Bse118I RCCGGY 6 cut(s) 89, 103, 166, 478, 544, 727
Bse1I ACTGG 4 cut(s) 440, 500, 527, 572
Bse21I CCTNAGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 398
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 293
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 4 cut(s) 440, 500, 527, 572
BseSI GKGCMC 2 cut(s) 97, 507
BseXI GCAGC 5 cut(s) 118, 119, 148, 251, 254
BseYI CCCAGC 3 cut(s) 304, 451, 685
BsgI GTGCAG 3 cut(s) 147, 459, 648
Bsh1236I CGCG 1 cut(s) 536
Bsh1285I CGRYCG 1 cut(s) 810
BshFI GGCC 1 cut(s) 731
BshNI GGYRCC 2 cut(s) 418, 481
BshTI ACCGGT 2 cut(s) 89, 544
BsiEI CGRYCG 1 cut(s) 810
BsiHKAI GWGCWC 1 cut(s) 97
BsiSI CCGG 6 cut(s) 90, 104, 167, 479, 545, 728
BslFI GGGAC 2 cut(s) 296, 666
BsmFI GGGAC 2 cut(s) 296, 666
BsnI GGCC 1 cut(s) 731
Bsp1286I GDGCHC 2 cut(s) 97, 507
Bsp1407I TGTACA 1 cut(s) 673
Bsp143I GATC 1 cut(s) 807
BspANI GGCC 1 cut(s) 731
BspCNI CTCAG 1 cut(s) 81
BspFNI CGCG 1 cut(s) 536
BspLI GGNNCC 3 cut(s) 420, 483, 732
BspMI ACCTGC 4 cut(s) 166, 433, 598, 670
BspT107I GGYRCC 2 cut(s) 418, 481
BsrDI GCAATG 1 cut(s) 398
BsrFI RCCGGY 6 cut(s) 89, 103, 166, 478, 544, 727
BsrGI TGTACA 1 cut(s) 673
BsrI ACTGG 4 cut(s) 440, 500, 527, 572
BssAI RCCGGY 6 cut(s) 89, 103, 166, 478, 544, 727
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 1 cut(s) 807
BssNI GRCGYC 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 673, 700
BstACI GRCGYC 1 cut(s) 419
BstAPI GCANNNNNTGC 1 cut(s) 473
BstAUI TGTACA 1 cut(s) 673
BstC8I GCNNGC 5 cut(s) 48, 129, 540, 579, 834
BstDEI CTNAG 2 cut(s) 68, 282
BstF5I GGATG 1 cut(s) 293
BstFNI CGCG 1 cut(s) 536
BstH2I RGCGCY 1 cut(s) 422
BstHHI GCGC 2 cut(s) 421, 538
BstKTI GATC 1 cut(s) 810
BstMBI GATC 1 cut(s) 807
BstMCI CGRYCG 1 cut(s) 810
BstMWI GCNNNNNNNGC 5 cut(s) 167, 212, 425, 473, 494
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 411
BstSLI GKGCMC 2 cut(s) 97, 507
BstUI CGCG 1 cut(s) 536
BstV1I GCAGC 5 cut(s) 118, 119, 148, 251, 254
BstV2I GAAGAC 1 cut(s) 14
Bsu36I CCTNAGG 1 cut(s) 282
BsuI GTATCC 1 cut(s) 541
BsuRI GGCC 1 cut(s) 731
BtsCI GGATG 1 cut(s) 293
BtsIMutI CAGTG 2 cut(s) 507, 579
BveI ACCTGC 4 cut(s) 166, 433, 598, 670
Cac8I GCNNGC 5 cut(s) 48, 129, 540, 579, 834
CaiI CAGNNNCTG 2 cut(s) 458, 662
CfoI GCGC 2 cut(s) 421, 538
Cfr10I RCCGGY 6 cut(s) 89, 103, 166, 478, 544, 727
Cfr13I GGNCC 1 cut(s) 730
Csp6I GTAC 1 cut(s) 674
CspAI ACCGGT 2 cut(s) 89, 544
CviAII CATG 1 cut(s) 650
CviQI GTAC 1 cut(s) 674
DdeI CTNAG 2 cut(s) 68, 282
DinI GGCGCC 1 cut(s) 420
DpnI GATC 1 cut(s) 809
DpnII GATC 1 cut(s) 807
Eco32I GATATC 1 cut(s) 789
Eco81I CCTNAGG 1 cut(s) 282
EcoRI GAATTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 10
EcoRV GATATC 1 cut(s) 789
EgeI GGCGCC 1 cut(s) 420
EheI GGCGCC 1 cut(s) 420
FaeI CATG 1 cut(s) 653
FaiI YATR 3 cut(s) 61, 651, 827
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 2 cut(s) 296, 666
FatI CATG 1 cut(s) 649
FauI CCCGC 3 cut(s) 150, 274, 327
Fnu4HI GCNGC 9 cut(s) 108, 111, 132, 162, 240, 243, 371, 404, 417
FokI GGATG 1 cut(s) 280
Fsp4HI GCNGC 9 cut(s) 108, 111, 132, 162, 240, 243, 371, 404, 417
GlaI GCGC 2 cut(s) 420, 537
GluI GCNGC 9 cut(s) 108, 111, 132, 162, 240, 243, 371, 404, 417
GsaI CCCAGC 3 cut(s) 308, 455, 689
HaeII RGCGCY 1 cut(s) 422
HaeIII GGCC 1 cut(s) 731
HapII CCGG 6 cut(s) 90, 104, 167, 479, 545, 728
HhaI GCGC 2 cut(s) 421, 538
Hin1I GRCGYC 1 cut(s) 419
Hin1II CATG 1 cut(s) 653
Hin6I GCGC 2 cut(s) 419, 536
HinP1I GCGC 2 cut(s) 419, 536
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 2 cut(s) 364, 795
HpaII CCGG 6 cut(s) 90, 104, 167, 479, 545, 728
HphI GGTGA 7 cut(s) 250, 264, 369, 501, 579, 712, 729
Hpy166II GTNNAC 3 cut(s) 95, 335, 345
Hpy188III TCNNGA 1 cut(s) 792
Hpy8I GTNNAC 3 cut(s) 95, 335, 345
HpyAV CCTTC 2 cut(s) 207, 285
HpyCH4III ACNGT 2 cut(s) 673, 700
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 212, 425, 473, 494
HpyF3I CTNAG 2 cut(s) 68, 282
Hsp92I GRCGYC 1 cut(s) 419
Hsp92II CATG 1 cut(s) 653
HspAI GCGC 2 cut(s) 419, 536
KasI GGCGCC 1 cut(s) 418
Kzo9I GATC 1 cut(s) 807
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 5 cut(s) 118, 119, 148, 251, 254
LweI GCATC 3 cut(s) 278, 437, 649
MaeIII GTNAC 3 cut(s) 217, 700, 802
MalI GATC 1 cut(s) 809
MboI GATC 1 cut(s) 807
MboII GAAGA 2 cut(s) 14, 625
MhlI GDGCHC 2 cut(s) 97, 507
MluCI AATT 2 cut(s) 15, 748
Mly113I GGCGCC 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 458
MnlI CCTC 7 cut(s) 77, 127, 417, 517, 706, 752, 776
MseI TTAA 2 cut(s) 462, 515
MslI CAYNNNNRTG 1 cut(s) 648
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 6 cut(s) 90, 104, 167, 479, 545, 728
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
MvnI CGCG 1 cut(s) 536
MwoI GCNNNNNNNGC 5 cut(s) 167, 212, 425, 473, 494
NarI GGCGCC 1 cut(s) 419
NdeII GATC 1 cut(s) 807
NlaIII CATG 1 cut(s) 653
NlaIV GGNNCC 3 cut(s) 420, 483, 732
NmuCI GTSAC 1 cut(s) 700
PaqCI CACCTGC 4 cut(s) 166, 433, 598, 670
PfeI GAWTC 2 cut(s) 364, 795
PinAI ACCGGT 2 cut(s) 89, 544
PkrI GCNGC 9 cut(s) 109, 112, 133, 163, 241, 244, 372, 405, 418
Ple19I CGATCG 1 cut(s) 810
PluTI GGCGCC 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 10
PspFI CCCAGC 3 cut(s) 304, 451, 685
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 3 cut(s) 420, 483, 732
PspPI GGNCC 1 cut(s) 730
PstNI CAGNNNCTG 2 cut(s) 458, 662
PvuI CGATCG 1 cut(s) 810
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 1 cut(s) 675
RsaNI GTAC 1 cut(s) 674
RseI CAYNNNNRTG 1 cut(s) 648
SaqAI TTAA 2 cut(s) 462, 515
SatI GCNGC 9 cut(s) 108, 111, 132, 162, 240, 243, 371, 404, 417
Sau3AI GATC 1 cut(s) 807
Sau96I GGNCC 1 cut(s) 730
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 2 cut(s) 97, 507
SfaNI GCATC 3 cut(s) 278, 437, 649
SfcI CTRYAG 1 cut(s) 411
SfoI GGCGCC 1 cut(s) 420
SmiMI CAYNNNNRTG 1 cut(s) 648
Sse9I AATT 2 cut(s) 15, 748
SspDI GGCGCC 1 cut(s) 418
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 673, 700
TaqI TCGA 2 cut(s) 38, 389
TasI AATT 2 cut(s) 15, 748
TatI WGTACW 1 cut(s) 673
TauI GCSGC 4 cut(s) 113, 373, 406, 419
TfiI GAWTC 2 cut(s) 364, 795
Tru1I TTAA 2 cut(s) 462, 515
Tru9I TTAA 2 cut(s) 462, 515
TscAI CASTG 2 cut(s) 507, 579
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 5 cut(s) 107, 131, 161, 239, 242
Tsp45I GTSAC 1 cut(s) 700
TspRI CASTG 2 cut(s) 507, 579
VneI GTGCAC 1 cut(s) 93
XapI RAATTY 2 cut(s) 15, 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.