Rh4DG350200

Lysine-rich arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0015270
Physical Location & Seq
Reverse (-)
57190325 .. 57191017
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG350200.1

Sequence Viewer

Length: 693 bp
ATGGCTTCGACTCTGATGGCCCTGGTTTTGACCTGTCTCACCTTTCAACTAGTCCTCACCAATGCACAAACACCAGCAGCTGCACCCGCTACGGCTACAACGCCGCCGCCACCTACCACACCGATTGCACCAGCTGCGCAACCACCGACTGCTGTAACACCACCCCCTGTAACTGCAGCAGCAACCCCACCCACAACCCCGCCAACAACATCACCACCCCCTAAAGTTGCACCATCCACAAGCCCGACAGTCCCACCCCCAAAAACTCCACCAACACAACCACCAAAGATTTCACCTGTCTCAACTCCATCTCAGCCACCAACACCACCACCACCAGCTGTTTCACCACCACTACCGCCTCCACAAGTAGCACCACAGGTATCCCCAACCCCAGCTCCTGTTAAGAAATCGCCGGCGCCAGCACCAGCCAAGGCAGCACCAGTGCCCTCACCATCACAAGCACCGCCAGTACCAGCGCCAACACCAGTTGTCGCGCAACCAGTTCCAGCCCCTGTGGAAGTGCCGTCACCTGCACCTGCTCCACATAAACACAAGAAAAGGAAGCACAAGCACAGGAGGCATCATCATGCACCAGCACCGGCGCCAACTGTCCAAAGTCCCCCAGCCCCACCTATAGTGACAGATACAGAGGATACAACACCAGCACCATCACCAACTTTGGATTTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

23.02

Weight (kDa)

10.24

Isoelectric Point (pI)

109.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68725
fragaria_vesca FvH4_4g28430
malus_domestica MD13G1050000.v1.1
prunus_persica Prupe.1G301700_v2.0.a1
pyrus_communis pycom13g04430 pycom16g04470
rosa_chinensis RchiOBHm_Chr4g0436381
rosa_laevigata RLG00000006523
rosa_multiflora Rmu_sc0007205.1_g000001
rosa_roxburghii Rroxscaffold_5G00377550
rosa_rugosa Rorug04G0293400
rosa_samantha Rh4AG347700 Rh4BG356500 Rh4CG371100 Rh4DG350200
rosa_wichuraiana Rw4G030400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 538, 544
Acc16I TGCGCA 1 cut(s) 138
Acc36I ACCTGC 2 cut(s) 538, 544
AccB1I GGYRCC 2 cut(s) 415, 601
AccII CGCG 1 cut(s) 494
AciI CCGC 6 cut(s) 87, 104, 107, 200, 356, 464
AcyI GRCGYC 2 cut(s) 416, 602
AfaI GTAC 1 cut(s) 471
AgsI TTSAA 1 cut(s) 47
AhlI ACTAGT 1 cut(s) 49
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 4 cut(s) 80, 134, 338, 395
AluI AGCT 4 cut(s) 80, 134, 338, 395
Alw26I GTCTC 2 cut(s) 41, 304
AlwNI CAGNNNCTG 3 cut(s) 80, 398, 512
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 6 cut(s) 77, 80, 134, 176, 179, 434
AspLEI GCGC 5 cut(s) 139, 418, 478, 496, 604
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 8 cut(s) 31, 49, 204, 285, 336, 441, 519, 663
BaeGI GKGCMC 1 cut(s) 447
BanI GGYRCC 2 cut(s) 415, 601
BbvI GCAGC 6 cut(s) 67, 89, 121, 188, 191, 446
BccI CCATC 5 cut(s) 10, 241, 316, 460, 676
BceAI ACGGC 2 cut(s) 108, 508
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 2 cut(s) 391, 646
BcoDI GTCTC 2 cut(s) 41, 304
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 2 cut(s) 174, 633
BfoI RGCGCY 3 cut(s) 419, 479, 605
BfuAI ACCTGC 2 cut(s) 538, 544
BfuI GTATCC 2 cut(s) 391, 646
BisI GCNGC 8 cut(s) 78, 81, 104, 107, 135, 177, 180, 435
BlsI GCNGC 8 cut(s) 79, 82, 105, 108, 136, 178, 181, 436
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 2 cut(s) 417, 603
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 589
BsaHI GRCGYC 2 cut(s) 416, 602
BsaJI CCNNGG 2 cut(s) 21, 429
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bse118I RCCGGY 2 cut(s) 412, 598
Bse1I ACTGG 4 cut(s) 440, 467, 485, 500
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 21, 429
BseGI GGATG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 4 cut(s) 440, 467, 485, 500
BseSI GKGCMC 1 cut(s) 447
BseXI GCAGC 6 cut(s) 67, 89, 121, 188, 191, 446
BseYI CCCAGC 2 cut(s) 391, 622
BsgI GTGCAG 2 cut(s) 66, 516
Bsh1236I CGCG 1 cut(s) 494
BshFI GGCC 1 cut(s) 20
BshNI GGYRCC 2 cut(s) 415, 601
BsiSI CCGG 2 cut(s) 413, 599
BslFI GGGAC 2 cut(s) 236, 603
BsmAI GTCTC 2 cut(s) 41, 304
BsmFI GGGAC 2 cut(s) 236, 603
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 447
BspACI CCGC 6 cut(s) 87, 104, 107, 200, 356, 464
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 325
BspFNI CGCG 1 cut(s) 494
BspLI GGNNCC 2 cut(s) 417, 603
BspMAI CTGCAG 1 cut(s) 178
BspMI ACCTGC 2 cut(s) 538, 544
BspT107I GGYRCC 2 cut(s) 415, 601
BsrFI RCCGGY 2 cut(s) 412, 598
BsrI ACTGG 4 cut(s) 440, 467, 485, 500
BssAI RCCGGY 2 cut(s) 412, 598
BssECI CCNNGG 2 cut(s) 21, 429
BssNI GRCGYC 2 cut(s) 416, 602
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 250, 610
BstACI GRCGYC 2 cut(s) 416, 602
BstAPI GCANNNNNTGC 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 414, 420
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 233
BstFNI CGCG 1 cut(s) 494
BstH2I RGCGCY 3 cut(s) 419, 479, 605
BstHHI GCGC 5 cut(s) 139, 418, 478, 496, 604
BstMAI GTCTC 2 cut(s) 41, 304
BstMWI GCNNNNNNNGC 4 cut(s) 86, 134, 434, 577
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 2 cut(s) 174, 633
BstSLI GKGCMC 1 cut(s) 447
BstUI CGCG 1 cut(s) 494
BstV1I GCAGC 6 cut(s) 67, 89, 121, 188, 191, 446
BsuI GTATCC 2 cut(s) 391, 646
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 447
BveI ACCTGC 2 cut(s) 538, 544
Cac8I GCNNGC 2 cut(s) 414, 420
CaiI CAGNNNCTG 3 cut(s) 80, 398, 512
CfoI GCGC 5 cut(s) 139, 418, 478, 496, 604
Cfr10I RCCGGY 2 cut(s) 412, 598
Cfr13I GGNCC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 470
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviAII CATG 1 cut(s) 587
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 1 cut(s) 312
DinI GGCGCC 2 cut(s) 417, 603
Eco130I CCWWGG 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 429
EgeI GGCGCC 2 cut(s) 417, 603
EheI GGCGCC 2 cut(s) 417, 603
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 1 cut(s) 590
FaiI YATR 4 cut(s) 546, 588, 635, 691
FaqI GGGAC 2 cut(s) 236, 603
FatI CATG 1 cut(s) 586
FauI CCCGC 2 cut(s) 94, 207
Fnu4HI GCNGC 8 cut(s) 78, 81, 104, 107, 135, 177, 180, 435
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 8 cut(s) 78, 81, 104, 107, 135, 177, 180, 435
FspBI CTAG 1 cut(s) 50
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 5 cut(s) 138, 417, 477, 495, 603
GluI GCNGC 8 cut(s) 78, 81, 104, 107, 135, 177, 180, 435
GsaI CCCAGC 2 cut(s) 395, 626
HaeII RGCGCY 3 cut(s) 419, 479, 605
HaeIII GGCC 1 cut(s) 20
HapII CCGG 2 cut(s) 413, 599
HhaI GCGC 5 cut(s) 139, 418, 478, 496, 604
Hin1I GRCGYC 2 cut(s) 416, 602
Hin1II CATG 1 cut(s) 590
Hin6I GCGC 5 cut(s) 137, 416, 476, 494, 602
HinP1I GCGC 5 cut(s) 137, 416, 476, 494, 602
HinfI GANTC 1 cut(s) 10
HpaII CCGG 2 cut(s) 413, 599
HphI GGTGA 8 cut(s) 31, 49, 204, 285, 336, 441, 519, 663
Hpy188I TCNGA 1 cut(s) 15
HpyCH4III ACNGT 2 cut(s) 250, 610
HpyCH4V TGCA 7 cut(s) 65, 83, 128, 176, 230, 533, 590
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 134, 434, 577
HpyF3I CTNAG 1 cut(s) 312
Hsp92I GRCGYC 2 cut(s) 416, 602
Hsp92II CATG 1 cut(s) 590
HspAI GCGC 5 cut(s) 137, 416, 476, 494, 602
KasI GGCGCC 2 cut(s) 415, 601
KroI GCCGGC 1 cut(s) 412
KroNI GCCGGC 1 cut(s) 414
LmnI GCTCC 2 cut(s) 400, 544
Lsp1109I GCAGC 6 cut(s) 67, 89, 121, 188, 191, 446
LweI GCATC 1 cut(s) 589
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 4 cut(s) 154, 169, 525, 637
MhlI GDGCHC 1 cut(s) 447
Mly113I GGCGCC 2 cut(s) 416, 602
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 5 cut(s) 65, 369, 457, 570, 643
MreI CGCCGGCG 1 cut(s) 412
MroNI GCCGGC 1 cut(s) 412
MseI TTAA 1 cut(s) 402
MslI CAYNNNNRTG 1 cut(s) 585
MspA1I CMGCKG 3 cut(s) 80, 134, 338
MspI CCGG 2 cut(s) 413, 599
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 4 cut(s) 86, 134, 434, 577
NaeI GCCGGC 1 cut(s) 414
NarI GGCGCC 2 cut(s) 416, 602
NgoMIV GCCGGC 1 cut(s) 412
NlaIII CATG 1 cut(s) 590
NlaIV GGNNCC 2 cut(s) 417, 603
NmuCI GTSAC 2 cut(s) 525, 637
NsbI TGCGCA 1 cut(s) 138
PaqCI CACCTGC 2 cut(s) 538, 544
PdiI GCCGGC 1 cut(s) 414
PkrI GCNGC 8 cut(s) 79, 82, 105, 108, 136, 178, 181, 436
PleI GAGTC 1 cut(s) 4
PluTI GGCGCC 2 cut(s) 419, 605
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 2 cut(s) 391, 622
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 417, 603
PspPI GGNCC 1 cut(s) 19
PstI CTGCAG 1 cut(s) 178
PstNI CAGNNNCTG 3 cut(s) 80, 398, 512
PvuII CAGCTG 3 cut(s) 80, 134, 338
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
RseI CAYNNNNRTG 1 cut(s) 585
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 8 cut(s) 78, 81, 104, 107, 135, 177, 180, 435
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 447
SfaNI GCATC 1 cut(s) 589
SfcI CTRYAG 2 cut(s) 174, 633
SfoI GGCGCC 2 cut(s) 417, 603
SgrAI CRCCGGYG 2 cut(s) 412, 598
SmiMI CAYNNNNRTG 1 cut(s) 585
SpeI ACTAGT 1 cut(s) 49
SsiI CCGC 6 cut(s) 87, 104, 107, 200, 356, 464
SspDI GGCGCC 2 cut(s) 415, 601
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 2 cut(s) 250, 610
TaqI TCGA 1 cut(s) 8
TauI GCSGC 2 cut(s) 106, 109
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 1 cut(s) 447
TseFI GTSAC 2 cut(s) 525, 637
TseI GCWGC 6 cut(s) 77, 80, 134, 176, 179, 434
Tsp45I GTSAC 2 cut(s) 525, 637
TspRI CASTG 1 cut(s) 447
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.