Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012825

Physical Location & Seq

Genomic Coordinates Reverse (-)

26040689 .. 26042741

Gene Structure 2053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1623 bp

ATGAAACTTCTGGGTTTGGTCTTCTTGCTGTTTAATCTGTTTATGTTTTCGTTTTCTCGGAAACTTTTAACCGAGAGTGGTGGTGGTCTCCACGACGAAGCTGCTCTGTTGAAGTTGAAGAGTAGTTTCTTGGATCCAAATGGAGTTCTGTCTAGCTGGGTTTCCGACAGCTCATCAAACCATTGTTCTTGGTACGGTGTCTCTTGCAACTCTGATTCGAGAGTCGTTTCTTTAATTCTCAGAGGCTGTGATGAGCTTGAAGGTAGTGGTGTTCTTCATCTCCCAGATTTGTCTTCTTGTTCTTCAAGTAAAAGAAGACTTGGTGGTGTAATCTCTCCTGTTGTTGGAGATTTGTCTGAAATTAGGGTTTTATCTCTGTCTTTTAATGATCTTAGAGGTGAGATTCCAAAGGAGATTTGGGGGTTGGAGAAATTAGAGATTCTTGATCTTAAAGGTAACAACTTTATCGGTGGAATTAGGGTTGTTGATAATGTTGTTCTTAGGAAACTTATGAGTTTTGAGGATGAAGATGAAATTGGTCCAAGCTCAGCTGATGATGATTCTCCTGGTAAATCTGGATTGTATCCGATTGAGATAGCTTCTATTGTGTCAGCTTCAGTGATTGTCTTTGTGCTTCTTGTTCTTGTGATCTTGTTCATCTACACGAGGAAATGGAAACGAAACTCTCAGGTTCAGGTAGATGAGATCAAGGAGATTAAAGTGTTTGTTGACATTGGTATTCCTCTGACGTATGAGATCATTGTTAGAGCTACTGGTTACTTTAGTAACTCTAACTGTATCGGTCACGGCGGTTTCGGTTCGACTTATAAAGCAGAGGTGTCTCCAACGAATGTGTTTGCTGTTAAAAGACTCTCTGTTGGGAGGTTTCAAGGTGATCAACAGTTTCATGCTGAGATCTCTGCTCTTGAGATGGTTAGGCATCCGAATCTTGTTATGTTAATCGGTTACCATGCGAGCGAAACCGAGATGTTTCTTATTTACAACTACTTATCTGGAGGAAACCTTCAAGATTTCATTAAAGAGAGATCGAAAGCTGCTATTGAGTGGAAGGTACTTCACAAGATTGCTCTTGATGTAGCGCGTGCTCTCTCCTATCTTCACGAACAGTGTTCTCCTAAAGTCTTGCATAGAGATATCAAACCGAGTAACATACTCTTGGACAACAACTACAACGCTTATCTATCTGATTTCGGACTCTCGAAACTCTTGGGAACTTCGCAGTCTCATGTCACAACTGGTGTGGCTGGAACATTCGGATATGTAGCTCCAGAGTACGCAATGACATGCCGAGTCTCGGAGAAAGCAGATGTTTACAGCTATGGGATAGTCCTCTTGGAGCTGATATCGGACAAACGAGCTCTGGATCCTTCTTTCTCATCGCATGAGAACGGGTTCAACATTGTCTCGTGGGCTCATATGATGTTGAGTCAAGGCAAAGCGAAAGAAGTCTTCACCACAGGACTATGGGAGACTGGTCCTCCAGACGATTTGGTCGAGGTTCTGCATTTGGCACTCAAATGCACCGTCGATAGCCTCTCGATAAGGCCGACAATGAAACAAGCTGTAAGACTGCTGAAACGAATCCAGCCTTCTAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 Pkinase

Protein Analysis

540

Amino Acids

59.74

Weight (kDa)

6.18

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 70	9.9e-15	Leucine rich repeat N-terminal domain
Pkinase	PF00069	263 - 529	3.3e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	265 - 530	9.7e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69270
fragaria_vesca	FvH4_4g29970
malus_domestica	MD13G1062000.v1.1 MD16G1060500.v1.1
prunus_persica	Prupe.1G287800_v2.0.a1
pyrus_communis	pycom13g05450 pycom16g05270
rosa_chinensis	RchiOBHm_Chr4g0438241
rosa_laevigata	RLG00000006378
rosa_multiflora	Rmu_sc0002682.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379330
rosa_rugosa	Rorug04G0308300
rosa_samantha	Rh4AG359300 Rh4BG370100 Rh4CG384300 Rh4DG365200
rosa_wichuraiana	Rw0G006390 Rw0G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	828
AasI	GACNNNNNNGTC	1 cut(s)	1511
AccII	CGCG	1 cut(s)	1102
AciI	CCGC	1 cut(s)	810
AclWI	GGATC	4 cut(s)	128, 141, 1379, 1392
AcuI	CTGAAG	1 cut(s)	600
AfaI	GTAC	3 cut(s)	194, 1074, 1295
AfiI	CCNNNNNNNGG	2 cut(s)	344, 1315
AgsI	TTSAA	7 cut(s)	112, 118, 260, 306, 890, 1028, 1417
AjnI	CCWGG	1 cut(s)	565
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
Alw21I	GWGCWC	2 cut(s)	1108, 1381
Alw26I	GTCTC	7 cut(s)	92, 205, 846, 1248, 1318, 1429, 1484
AlwI	GGATC	4 cut(s)	128, 141, 1379, 1392
AlwNI	CAGNNNCTG	1 cut(s)	246
AoxI	GGCC	1 cut(s)	1565
ApeKI	GCWGC	2 cut(s)	101, 1055
ArsI	GACNNNNNNTTYG	2 cut(s)	1530, 1562
Asp700I	GAANNNNTTC	1 cut(s)	1412
AspLEI	GCGC	1 cut(s)	1102
AspS9I	GGNCC	2 cut(s)	539, 1496
AsuHPI	GGTGA	3 cut(s)	410, 905, 1465
AvaII	GGWCC	2 cut(s)	539, 1496
BamHI	GGATCC	2 cut(s)	133, 1384
BanII	GRGCYC	2 cut(s)	1381, 1435
BauI	CACGAG	2 cut(s)	664, 1426
BbsI	GAAGAC	4 cut(s)	13, 285, 322, 1462
Bbv12I	GWGCWC	2 cut(s)	1108, 1381
BbvI	GCAGC	2 cut(s)	88, 1042
BccI	CCATC	1 cut(s)	925
BceAI	ACGGC	1 cut(s)	823
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	1 cut(s)	567
BciVI	GTATCC	1 cut(s)	594
BclI	TGATCA	1 cut(s)	895
BcoDI	GTCTC	7 cut(s)	92, 205, 846, 1248, 1318, 1429, 1484
BfaI	CTAG	2 cut(s)	153, 1614
BfuI	GTATCC	1 cut(s)	594
BglII	AGATCT	1 cut(s)	915
BisI	GCNGC	2 cut(s)	102, 1056
BlpI	GCTNAGC	1 cut(s)	547
BlsI	GCNGC	2 cut(s)	103, 1057
Bme1390I	CCNGG	1 cut(s)	567
Bme18I	GGWCC	2 cut(s)	539, 1496
BmgT120I	GGNCC	2 cut(s)	539, 1496
BmiI	GGNNCC	2 cut(s)	135, 1386
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	1 cut(s)	949
BpiI	GAAGAC	4 cut(s)	13, 285, 322, 1462
BpmI	CTGGAG	3 cut(s)	1035, 1272, 1485
Bpu1102I	GCTNAGC	1 cut(s)	547
BpuEI	CTTGAG	1 cut(s)	947
BsaI	GGTCTC	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	1483, 1513
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 1315
Bse1I	ACTGG	3 cut(s)	778, 1261, 1498
Bse3DI	GCAATG	1 cut(s)	1305
BseBI	CCWGG	1 cut(s)	567
BseGI	GGATG	2 cut(s)	529, 940
BseLI	CCNNNNNNNGG	2 cut(s)	344, 1315
BseMI	GCAATG	1 cut(s)	1305
BseMII	CTCAG	4 cut(s)	253, 561, 701, 903
BseNI	ACTGG	3 cut(s)	778, 1261, 1498
BseXI	GCAGC	2 cut(s)	88, 1042
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	1102
BshFI	GGCC	1 cut(s)	1567
BsiHKAI	GWGCWC	2 cut(s)	1108, 1381
BslI	CCNNNNNNNGG	2 cut(s)	344, 1315
BsmAI	GTCTC	7 cut(s)	92, 205, 846, 1248, 1318, 1429, 1484
BsnI	GGCC	1 cut(s)	1567
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	3 cut(s)	1108, 1381, 1435
Bsp1720I	GCTNAGC	1 cut(s)	547
BspACI	CCGC	1 cut(s)	810
BspANI	GGCC	1 cut(s)	1567
BspCNI	CTCAG	4 cut(s)	252, 560, 700, 904
BspFNI	CGCG	1 cut(s)	1102
BspLI	GGNNCC	2 cut(s)	135, 1386
BspPI	GGATC	4 cut(s)	128, 141, 1379, 1392
BspTNI	GGTCTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	1305
BsrI	ACTGG	3 cut(s)	778, 1261, 1498
BssSI	CACGAG	2 cut(s)	664, 1426
Bst2BI	CACGAG	2 cut(s)	664, 1426
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	5 cut(s)	197, 797, 903, 1128, 1546
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	976, 1104
BstDEI	CTNAG	6 cut(s)	239, 392, 500, 547, 687, 912
BstEII	GGTNACC	1 cut(s)	965
BstF5I	GGATG	2 cut(s)	529, 940
BstFNI	CGCG	1 cut(s)	1102
BstHHI	GCGC	1 cut(s)	1102
BstMAI	GTCTC	7 cut(s)	92, 205, 846, 1248, 1318, 1429, 1484
BstNI	CCWGG	1 cut(s)	567
BstNSI	RCATGY	1 cut(s)	1308
BstPI	GGTNACC	1 cut(s)	965
BstSCI	CCNGG	1 cut(s)	565
BstUI	CGCG	1 cut(s)	1102
BstV1I	GCAGC	2 cut(s)	88, 1042
BstV2I	GAAGAC	4 cut(s)	13, 285, 322, 1462
BstX2I	RGATCY	3 cut(s)	133, 915, 1384
BstYI	RGATCY	3 cut(s)	133, 915, 1384
BsuI	GTATCC	1 cut(s)	594
BsuRI	GGCC	1 cut(s)	1567
BtgZI	GCGATG	1 cut(s)	1383
BtsCI	GGATG	2 cut(s)	529, 940
BtsIMutI	CAGTG	2 cut(s)	624, 1133
Cac8I	GCNNGC	2 cut(s)	976, 1104
CaiI	CAGNNNCTG	1 cut(s)	246
CfoI	GCGC	1 cut(s)	1102
Cfr13I	GGNCC	2 cut(s)	539, 1496
Csp6I	GTAC	3 cut(s)	193, 1073, 1294
CspCI	CAANNNNNGTGG	2 cut(s)	1242, 1277
CviAII	CATG	5 cut(s)	908, 971, 1247, 1305, 1403
CviQI	GTAC	3 cut(s)	193, 1073, 1294
DdeI	CTNAG	6 cut(s)	239, 392, 500, 547, 687, 912
DrdI	GACNNNNNNGTC	1 cut(s)	1511
DseDI	GACNNNNNNGTC	1 cut(s)	1511
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Ecl136II	GAGCTC	1 cut(s)	1379
Eco24I	GRGCYC	2 cut(s)	1381, 1435
Eco31I	GGTCTC	1 cut(s)	92
Eco32I	GATATC	2 cut(s)	1156, 1365
Eco47I	GGWCC	2 cut(s)	539, 1496
Eco53kI	GAGCTC	1 cut(s)	1379
Eco57I	CTGAAG	1 cut(s)	600
Eco91I	GGTNACC	1 cut(s)	965
EcoICRI	GAGCTC	1 cut(s)	1379
EcoO65I	GGTNACC	1 cut(s)	965
EcoRII	CCWGG	1 cut(s)	565
EcoRV	GATATC	2 cut(s)	1156, 1365
EcoT38I	GRGCYC	2 cut(s)	1381, 1435
FaeI	CATG	5 cut(s)	911, 974, 1250, 1308, 1406
FatI	CATG	5 cut(s)	907, 970, 1246, 1304, 1402
FauNDI	CATATG	1 cut(s)	1437
FbaI	TGATCA	1 cut(s)	895
Fnu4HI	GCNGC	2 cut(s)	102, 1056
FokI	GGATG	2 cut(s)	536, 927
FriOI	GRGCYC	2 cut(s)	1381, 1435
Fsp4HI	GCNGC	2 cut(s)	102, 1056
FspBI	CTAG	2 cut(s)	153, 1614
GlaI	GCGC	1 cut(s)	1101
GluI	GCNGC	2 cut(s)	102, 1056
GsaI	CCCAGC	1 cut(s)	160
GsuI	CTGGAG	3 cut(s)	1035, 1272, 1485
HaeIII	GGCC	1 cut(s)	1567
HhaI	GCGC	1 cut(s)	1102
Hin1II	CATG	5 cut(s)	911, 974, 1250, 1308, 1406
Hin6I	GCGC	1 cut(s)	1100
HinP1I	GCGC	1 cut(s)	1100
HincII	GTYRAC	1 cut(s)	730
HindII	GTYRAC	1 cut(s)	730
HphI	GGTGA	3 cut(s)	410, 905, 1465
Hpy166II	GTNNAC	2 cut(s)	730, 1333
Hpy8I	GTNNAC	2 cut(s)	730, 1333
Hpy99I	CGWCG	2 cut(s)	98, 1550
HpyAV	CCTTC	5 cut(s)	254, 1034, 1063, 1398, 1620
HpyCH4III	ACNGT	5 cut(s)	197, 797, 903, 1128, 1546
HpyCH4IV	ACGT	1 cut(s)	749
HpyCH4V	TGCA	4 cut(s)	207, 1147, 1525, 1542
HpyF3I	CTNAG	6 cut(s)	239, 392, 500, 547, 687, 912
HpySE526I	ACGT	1 cut(s)	749
Hsp92II	CATG	5 cut(s)	911, 974, 1250, 1308, 1406
HspAI	GCGC	1 cut(s)	1100
Ksp22I	TGATCA	1 cut(s)	895
LmnI	GCTCC	2 cut(s)	1291, 1357
Lsp1109I	GCAGC	2 cut(s)	88, 1042
LweI	GCATC	1 cut(s)	949
MaeI	CTAG	2 cut(s)	153, 1614
MaeII	ACGT	1 cut(s)	749
MaeIII	GTNAC	7 cut(s)	455, 776, 785, 803, 965, 1166, 1249
MboII	GAAGA	9 cut(s)	13, 130, 266, 285, 294, 327, 539, 1109, 1462
MflI	RGATCY	3 cut(s)	133, 915, 1384
MhlI	GDGCHC	3 cut(s)	1108, 1381, 1435
MluCI	AATT	5 cut(s)	234, 360, 431, 474, 534
MlyI	GAGTC	5 cut(s)	231, 864, 1209, 1320, 1456
MmeI	TCCRAC	4 cut(s)	189, 325, 405, 869
MroXI	GAANNNNTTC	1 cut(s)	1412
MseI	TTAA	9 cut(s)	33, 68, 233, 384, 450, 717, 864, 959, 1038
MslI	CAYNNNNRTG	1 cut(s)	1537
MspA1I	CMGCKG	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	1 cut(s)	1102
NdeI	CATATG	1 cut(s)	1437
NlaIII	CATG	5 cut(s)	911, 974, 1250, 1308, 1406
NlaIV	GGNNCC	2 cut(s)	135, 1386
NmeAIII	GCCGAG	1 cut(s)	1334
NmuCI	GTSAC	2 cut(s)	803, 1249
NspI	RCATGY	1 cut(s)	1308
PcsI	WCGNNNNNNNCGW	2 cut(s)	1512, 1565
PdmI	GAANNNNTTC	1 cut(s)	1412
PfeI	GAWTC	6 cut(s)	215, 403, 439, 560, 946, 1602
PkrI	GCNGC	2 cut(s)	103, 1057
PleI	GAGTC	5 cut(s)	230, 864, 1209, 1319, 1455
PpsI	GAGTC	5 cut(s)	230, 864, 1209, 1319, 1455
PsiI	TTATAA	1 cut(s)	828
Psp124BI	GAGCTC	1 cut(s)	1381
Psp6I	CCWGG	1 cut(s)	565
PspEI	GGTNACC	1 cut(s)	965
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	2 cut(s)	135, 1386
PspPI	GGNCC	2 cut(s)	539, 1496
PstNI	CAGNNNCTG	1 cut(s)	246
PsuI	RGATCY	3 cut(s)	133, 915, 1384
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	3 cut(s)	194, 1074, 1295
RsaNI	GTAC	3 cut(s)	193, 1073, 1294
RseI	CAYNNNNRTG	1 cut(s)	1537
SacI	GAGCTC	1 cut(s)	1381
SaqAI	TTAA	9 cut(s)	33, 68, 233, 384, 450, 717, 864, 959, 1038
SatI	GCNGC	2 cut(s)	102, 1056
Sau96I	GGNCC	2 cut(s)	539, 1496
SchI	GAGTC	5 cut(s)	231, 864, 1209, 1320, 1456
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	3 cut(s)	1108, 1381, 1435
SfaNI	GCATC	1 cut(s)	949
SinI	GGWCC	2 cut(s)	539, 1496
SmiMI	CAYNNNNRTG	1 cut(s)	1537
SmlI	CTYRAG	1 cut(s)	926
SmoI	CTYRAG	1 cut(s)	926
Sse9I	AATT	5 cut(s)	234, 360, 431, 474, 534
SsiI	CCGC	1 cut(s)	810
SspMI	CTAG	2 cut(s)	153, 1614
SstI	GAGCTC	1 cut(s)	1381
StyD4I	CCNGG	1 cut(s)	565
TaaI	ACNGT	5 cut(s)	197, 797, 903, 1128, 1546
TaiI	ACGT	1 cut(s)	752
TaqI	TCGA	7 cut(s)	218, 821, 1049, 1220, 1515, 1548, 1559
TaqII	GACCGA	1 cut(s)	791
TasI	AATT	5 cut(s)	234, 360, 431, 474, 534
TfiI	GAWTC	6 cut(s)	215, 403, 439, 560, 946, 1602
Tru1I	TTAA	9 cut(s)	33, 68, 233, 384, 450, 717, 864, 959, 1038
Tru9I	TTAA	9 cut(s)	33, 68, 233, 384, 450, 717, 864, 959, 1038
TscAI	CASTG	2 cut(s)	624, 1133
TseFI	GTSAC	2 cut(s)	803, 1249
TseI	GCWGC	2 cut(s)	101, 1055
Tsp45I	GTSAC	2 cut(s)	803, 1249
TspDTI	ATGAA	8 cut(s)	17, 266, 540, 546, 646, 896, 1024, 1589
TspRI	CASTG	2 cut(s)	624, 1133
VpaK11BI	GGWCC	2 cut(s)	539, 1496
XbaI	TCTAGA	1 cut(s)	1613
XceI	RCATGY	1 cut(s)	1308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	1412
XspI	CTAG	2 cut(s)	153, 1614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.