Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012825

Physical Location & Seq

Genomic Coordinates Reverse (-)

59765322 .. 59768725

Gene Structure 3404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3360 bp

ATGAGATGGTGTGGCCTCAGAAACACCCTGCTTTTCCTCAAAGTCTTCTCCTTTTTGTTGTGCTTTTCAGTTTCCGGCGACAAAAGCCGCTGGTCGGAGAAGTCGGTTCTGCTCGAGCTGAAGACCTCGGTGTCGGACCCAGATGGGGTTCTGTCGACCTGGGCCCACGGCAGCTCTGATCACCACTGTTCCTGGTTCGGGGTCTCCTGCGACTCGAAATCCAAGGTTGTCTCGCTCAGCATAGCCGGGAGTGAAAATAAAGGAGGTAACTTTGAAGCTTTTACTTGCTCTGAGACTGTGAAATTTCAATTTCAGTTCGATGGGTTTGGGGCTTGGAGGAGGAGTGGTGAGGTTAGTGGTGGGAAATTAGGTGGAAAGCTTTCACCTTTGGTTGGGAAACTTACTGAGCTTAGAGTTTTATCTCTGCCGTTTAATGAGCTTAGTGGTGAGATTCCCGAGGAGGTTTGGGGGTTGGAGAAACTTGAAGTGCTTGATCTTGAGGGTAATTTGTTGGAGGGGAAGTTGCCGAGTTGGTTCTTGGGTTTGAGAAAGTTGAGGGTTTTCAATGTTGGGTTTAATAGGATTGGTGGGGAGGTTCCGGTTTCTCTTTCGAAATGTAGGGATTTGGAGGTTTTGAGTTTAGCAGGAAATGAAGTGAGTGGAGCCATCCCTGTGTTTTTTGGTGGTTTTGCAAAGTTGCAGGGCCTTTATTTGGCTCAAAATAGGTTAAATGGATCTATTCCGGCCAAATTTGGAAGGTCTTGTTTGAATCTTGAGCATTTTGATGTGTCGGGGAATTTCCTTGTTGGGAAGATTCCGCCTACTTTGGGGAGTTGTCTGCGGTTACGGACACTATTGTTGTTTTCGAATACTCTGGATGGTGGCATTCCTGGGGAACTTGGTAAGATTCAGGGGCTTGAAGTTCTGGATGTGTCTAGAAATAGCCTTAGCGGTCCAATCCCCGCTGAGCTCGGACAATGTGTCAATTTGTCGAATGCAAATGGAGATTCATCGGTTGAGTTATATAAAGGAGTGGATGATGATTACAATTTTTATGAAGGCTCCATTCCCCAGGAGATTACAAGCTTACCAAATTTGAGAATAGTTTGGGCGCCAAGGGCAACCCTCGAAGGCCAGCTTCCGAGCAATTGGGGTGGTTGTGAGAACTTGGAAATGGTGAACTTGGCTCAGAACCTTTTCACTGGAGAAGTGACTGGAGTGTTTGATAGATGCAAGAAGCTGCAGTATCTGAATTTGAGCTCAAATAAGCTGAGTGGGAAGCTTGATGACAAACTCCCAGTTCCTTGTATGACCGTTTTCAGTGTCAGTGGGAACCTCTTGTCTGGACCCATCCCCACATTTAATTTCGCAGTGTGCCCCCACGTGCCCCGAAATTCAGATCTTGTCCGAGTCCAGAATCCATTATTTGCATATCAAGTTCTCTTTACTTGCAGAACTTATCTTGACACCCATTTACCACTTTTTGGTTCTAGTTTCACATTGATTCACGATTTTAGTGGTAACAACTTCACTGGTCCAATCCAACACCTTCCTCTTGCACCTGAGAGGTTGGGGAAGCGAACTGTTTATGCATTTCTTGCTGGTGGGAACAAGTTCACTGGATCATTTGCTGAAACCTTAAAAGGAAAGTGTGATGGCTTACTTGGAATGATATTTAATGTTAGCAACAACAAGTTATCAGGCCACATTCCTTTCAAGATTGGCATGATGTGCAGATCTCTTAGACTCTTGGATGCCTCTGGAAATCTCTTATCTGGGTCAATACCTCCAGATCTTGGGGATGTGAAGCCTCTTGTCTTTCTTGACTTGAGCAGGAACCAGTTGCAGGGTCAAATTCCCGCAGGTATCAGTAATTTGAAGTATCTCAAGTATCTGTCCTTGGCTAATAACAACTTTACTGGTATGATTCCTGCTAGCTTTGTGGAGTTACGCTCCCTTGAAGTGTTAAAGTTATCTTCAAACTCTCTTTCTGGTGATATCCCGCAAGGTCTTGTTAAGTTGAAAAACCTAACTATTTTTATGCTTGACAACAATAAGCTCTCTGGCCGCATCCCTTCTGGTTTGACTAATGTGAGATCCCTGTCTACATTTAATGTCTCATATAATAACCTGTCTGGTTCATTTCCATTGAACAATAATATGATGAACTGTAGCGGTGTCCTTGGAAACCCTTTCGTTAATCAATGCCGCATTGTTTCCCTCGCTGCGCCATACTCAGCTCAGCCAGTTAGTGCTGCCAATTCACCACCAGGTAGTTCTGATCCTCAGTCAGCAAGTGCTCCTGGAAAGGATGGAATAAACTCAATTGAGATTGCATCCATAGTATCTGCATCAGCTATCGTGTTGGTTCTCTTCACTCTTGTTATCCTCTTCTTTTACACAAGAAAATGGATTCCAGATTCCAGAGTTCAGGGTTTTGAAAATAAAGAAATTACAATTTTCACGGAAATTGAGGCACCATTGACATTTGAGAATATTGTGCAAGCAACAGGGAATTTTAATGCCAGTAACTACATTGGGAGTGGAGGATTTGGGGCAACTTACAAAGCAGAAATCACTCCAGGAACCATAATCGCTGTAAAGAGGCTTGCCGTTGGAAGGTTTCACGGTGTTCAACAGTTCCATGCTGAGATTAAGACCCTCGGAAGGGTGAGACACCCCAACCTGGTAACTTTAATAGGTTACCATGCCAGTGAAACCGAGATGCTACTCATATATAATTATTTACCAGGAGGGAATTTGGAAAATTTTATTCAGGAAAGATCTAGAAGATCTTTTACTTGGAAGATTCTCCACAAGATTGCTCTGGATATTGCCCATGCACTTTCTTATCTGCATGACGAGTGTATCCCGCGTGTCCTACACCGTGATGTCAAGCCAAGCAATATACTGTTAGATGATAACTTGAATGCTTATTTGTCTGACTTTGGATTGTCTAGGCTGCTGGGAACTTCTGAAACGCATGCTACAACTGGTGTTGCAGGAACTTTTGGGTACGTAGCACCCGAGTATGCTATGACCTGTCGTGTGTCTGAGAAGGCTGATGTTTACAGTTACGGTGTTGTGCTGCTTGAATTGATTTCTGATAAGAAAGCCCTGGACCCATCATTTTCTTCACATGGTAATGGTTTCAACATTGTTTCTTGGGCGTGCATGCTGTTAAGAATGGGTCGGGCTAAGGACGTATTCATGGAAGGACTATGGGAGGCCGGACCCGAAGATGATCTGGTTGAGATGCTGTACTTGGCTGTCAAATGTACTGTTGAGACCCTCTCCATTAGGCCTACAATGAAGCAAGTTGTCCAAATACTGAAGCAAATACAACCTGCTTCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009698 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009808 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009908 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010035 GO:0010073 GO:0010152 GO:0010154 GO:0016020 GO:0016043 GO:0019748 GO:0021700 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0042221 GO:0043933 GO:0044085 GO:0044237 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048508 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051260 GO:0051704 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0099402 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

1119

Amino Acids

122.04

Weight (kDa)

7.73

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 71	8.2e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	131 - 217	3.9e-08	Leucine-rich repeat region
LRR_14	PF23598	579 - 705	2.8e-10	Leucine-rich repeat region
LRR_8	PF13855	608 - 663	3.4e-09	Leucine rich repeat
Pkinase	PF00069	842 - 1043	5.2e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	843 - 1110	8.2e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69270
fragaria_vesca	FvH4_4g29970
malus_domestica	MD13G1062000.v1.1 MD16G1060500.v1.1
prunus_persica	Prupe.1G287800_v2.0.a1
pyrus_communis	pycom13g05450 pycom16g05270
rosa_chinensis	RchiOBHm_Chr4g0438241
rosa_laevigata	RLG00000006378
rosa_multiflora	Rmu_sc0002682.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379330
rosa_rugosa	Rorug04G0308300
rosa_samantha	Rh4AG359300 Rh4BG370100 Rh4CG384300 Rh4DG365200
rosa_wichuraiana	Rw0G006390 Rw0G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	130
Acc36I	ACCTGC	2 cut(s)	1853, 3355
AccB1I	GGYRCC	2 cut(s)	1111, 2476
AccB7I	CCANNNNNTGG	2 cut(s)	1484, 1796
AccI	GTMKAC	2 cut(s)	155, 2105
AccII	CGCG	1 cut(s)	2875
AclWI	GGATC	4 cut(s)	742, 1630, 2091, 2276
AcoI	YGGCCR	2 cut(s)	744, 2065
AcuI	CTGAAG	2 cut(s)	140, 3353
AcvI	CACGTG	1 cut(s)	1384
AcyI	GRCGYC	1 cut(s)	1112
AfaI	GTAC	3 cut(s)	3017, 3263, 3280
AhdI	GACNNNNNGTC	1 cut(s)	980
Alw21I	GWGCWC	3 cut(s)	972, 1262, 2302
Alw26I	GTCTC	6 cut(s)	208, 235, 287, 2122, 2668, 3281
AlwI	GGATC	4 cut(s)	742, 1630, 2091, 2276
AlwNI	CAGNNNCTG	1 cut(s)	1249
Ama87I	CYCGRG	3 cut(s)	113, 455, 3026
AoxI	GGCC	9 cut(s)	13, 162, 703, 744, 1132, 1702, 2065, 3228, 3302
ApaI	GGGCCC	1 cut(s)	166
ApeKI	GCWGC	6 cut(s)	171, 1240, 2225, 2255, 2962, 3088
Asp700I	GAANNNNTTC	3 cut(s)	379, 1196, 1613
AspLEI	GCGC	2 cut(s)	1114, 2230
AspS9I	GGNCC	9 cut(s)	136, 162, 163, 703, 953, 1346, 1535, 3121, 3233
AsuC2I	CCSGG	1 cut(s)	247
AsuHPI	GGTGA	8 cut(s)	173, 359, 375, 458, 1189, 2006, 2256, 2683
AsuII	TTCGAA	2 cut(s)	611, 866
AsuNHI	GCTAGC	1 cut(s)	1934
AvaI	CYCGRG	3 cut(s)	113, 455, 3026
AvaII	GGWCC	6 cut(s)	136, 953, 1346, 1535, 3121, 3233
BaeGI	GKGCMC	3 cut(s)	166, 1379, 1389
BaeI	ACNNNNGTAYC	2 cut(s)	2851, 2884
BanI	GGYRCC	2 cut(s)	1111, 2476
BanII	GRGCYC	3 cut(s)	166, 972, 1262
BarI	GAAGNNNNNNTAC	2 cut(s)	2782, 2814
BbrPI	CACGTG	1 cut(s)	1384
BbsI	GAAGAC	2 cut(s)	37, 128
Bbv12I	GWGCWC	3 cut(s)	972, 1262, 2302
BbvI	GCAGC	6 cut(s)	183, 1227, 2212, 2242, 2949, 3075
BccI	CCATC	8 cut(s)	137, 314, 674, 872, 1358, 1649, 2306, 3133
BceAI	ACGGC	3 cut(s)	184, 412, 2597
BciVI	GTATCC	1 cut(s)	2879
BclI	TGATCA	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	247
BcoDI	GTCTC	6 cut(s)	208, 235, 287, 2122, 2668, 3281
BfaI	CTAG	6 cut(s)	936, 1491, 1935, 2787, 2958, 3358
BfmI	CTRYAG	2 cut(s)	1241, 2170
BfoI	RGCGCY	1 cut(s)	1115
BfuAI	ACCTGC	2 cut(s)	1853, 3355
BfuI	GTATCC	1 cut(s)	2879
BglII	AGATCT	5 cut(s)	1399, 1736, 1792, 2783, 2792
BisI	GCNGC	9 cut(s)	88, 172, 1241, 2068, 2209, 2226, 2256, 2963, 3089
BlpI	GCTNAGC	3 cut(s)	236, 966, 2241
BlsI	GCNGC	9 cut(s)	89, 173, 1242, 2069, 2210, 2227, 2257, 2964, 3090
Bme18I	GGWCC	6 cut(s)	136, 953, 1346, 1535, 3121, 3233
BmeRI	GACNNNNNGTC	1 cut(s)	980
BmeT110I	CYCGRG	3 cut(s)	113, 455, 3026
BmgT120I	GGNCC	9 cut(s)	136, 162, 163, 703, 953, 1346, 1535, 3121, 3233
BmrI	ACTGGG	1 cut(s)	1292
BmsI	GCATC	7 cut(s)	1220, 1744, 2079, 2345, 2360, 2715, 3246
BmtI	GCTAGC	1 cut(s)	1938
BmuI	ACTGGG	1 cut(s)	1292
BpiI	GAAGAC	2 cut(s)	37, 128
BplI	GAGNNNNNCTC	4 cut(s)	1937, 1969, 3278, 3310
BpmI	CTGGAG	4 cut(s)	1224, 1236, 1773, 2565
Bpu10I	CCTNAGC	2 cut(s)	947, 3198
Bpu1102I	GCTNAGC	3 cut(s)	236, 966, 2241
Bpu14I	TTCGAA	2 cut(s)	611, 866
BpuEI	CTTGAG	4 cut(s)	518, 794, 1849, 1871
BpuMI	CCSGG	1 cut(s)	247
BsaAI	YACGTR	2 cut(s)	1384, 3019
BsaHI	GRCGYC	1 cut(s)	1112
BsaI	GGTCTC	2 cut(s)	208, 3281
BsaWI	WCCGGW	1 cut(s)	598
BsaXI	ACNNNNNCTCC	6 cut(s)	328, 331, 358, 361, 506, 536
BseRI	GAGGAG	3 cut(s)	352, 355, 473
BseSI	GKGCMC	3 cut(s)	166, 1379, 1389
BseXI	GCAGC	6 cut(s)	183, 1227, 2212, 2242, 2949, 3075
BseYI	CCCAGC	1 cut(s)	2965
BsgI	GTGCAG	1 cut(s)	1753
Bsh1236I	CGCG	1 cut(s)	2875
BshFI	GGCC	9 cut(s)	15, 164, 705, 746, 1134, 1704, 2067, 3230, 3304
BshNI	GGYRCC	2 cut(s)	1111, 2476
BsiHKAI	GWGCWC	3 cut(s)	972, 1262, 2302
BsiHKCI	CYCGRG	3 cut(s)	113, 455, 3026
BsiSI	CCGG	5 cut(s)	75, 246, 599, 743, 3231
BsmAI	GTCTC	6 cut(s)	208, 235, 287, 2122, 2668, 3281
BsmI	GAATGC	3 cut(s)	885, 1000, 2935
BsnI	GGCC	9 cut(s)	15, 164, 705, 746, 1134, 1704, 2067, 3230, 3304
Bso31I	GGTCTC	2 cut(s)	208, 3281
BsoBI	CYCGRG	3 cut(s)	113, 455, 3026
Bsp119I	TTCGAA	2 cut(s)	611, 866
Bsp120I	GGGCCC	1 cut(s)	162
Bsp1286I	GDGCHC	6 cut(s)	166, 972, 1262, 1379, 1389, 2302
Bsp1720I	GCTNAGC	3 cut(s)	236, 966, 2241
BspANI	GGCC	9 cut(s)	15, 164, 705, 746, 1134, 1704, 2067, 3230, 3304
BspFNI	CGCG	1 cut(s)	2875
BspMAI	CTGCAG	1 cut(s)	1245
BspMI	ACCTGC	2 cut(s)	1853, 3355
BspOI	GCTAGC	1 cut(s)	1938
BspPI	GGATC	4 cut(s)	742, 1630, 2091, 2276
BspT104I	TTCGAA	2 cut(s)	611, 866
BspT107I	GGYRCC	2 cut(s)	1111, 2476
BspTNI	GGTCTC	2 cut(s)	208, 3281
BssNI	GRCGYC	1 cut(s)	1112
BssT1I	CCWWGG	4 cut(s)	222, 1115, 1899, 2182
Bst6I	CTCTTC	2 cut(s)	2378, 2396
BstACI	GRCGYC	1 cut(s)	1112
BstAPI	GCANNNNNTGC	2 cut(s)	1598, 1731
BstBAI	YACGTR	2 cut(s)	1384, 3019
BstBI	TTCGAA	2 cut(s)	611, 866
BstC8I	GCNNGC	7 cut(s)	1136, 1936, 2505, 2610, 2985, 3172, 3176
BstDSI	CCRYGG	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	2702
BstFNI	CGCG	1 cut(s)	2875
BstH2I	RGCGCY	1 cut(s)	1115
BstHHI	GCGC	2 cut(s)	1114, 2230
BstMAI	GTCTC	6 cut(s)	208, 235, 287, 2122, 2668, 3281
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 1118, 1598, 1731
BstNSI	RCATGY	2 cut(s)	2987, 3178
BstPI	GGTNACC	1 cut(s)	2702
BstSFI	CTRYAG	2 cut(s)	1241, 2170
BstSLI	GKGCMC	3 cut(s)	166, 1379, 1389
BstSNI	TACGTA	1 cut(s)	3019
BstUI	CGCG	1 cut(s)	2875
BstV1I	GCAGC	6 cut(s)	183, 1227, 2212, 2242, 2949, 3075
BstV2I	GAAGAC	2 cut(s)	37, 128
BstX2I	RGATCY	7 cut(s)	734, 1399, 1736, 1792, 2096, 2783, 2792
BstYI	RGATCY	7 cut(s)	734, 1399, 1736, 1792, 2096, 2783, 2792
BsuI	GTATCC	1 cut(s)	2879
BsuRI	GGCC	9 cut(s)	15, 164, 705, 746, 1134, 1704, 2067, 3230, 3304
BtgI	CCRYGG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	1377
BtsIMutI	CAGTG	8 cut(s)	184, 1200, 1327, 1333, 1377, 1530, 1617, 2719
BveI	ACCTGC	2 cut(s)	1853, 3355
Cac8I	GCNNGC	7 cut(s)	1136, 1936, 2505, 2610, 2985, 3172, 3176
CaiI	CAGNNNCTG	1 cut(s)	1249
CfoI	GCGC	2 cut(s)	1114, 2230
Cfr13I	GGNCC	9 cut(s)	136, 162, 163, 703, 953, 1346, 1535, 3121, 3233
CsiI	ACCWGGT	2 cut(s)	2269, 2685
Csp6I	GTAC	3 cut(s)	3016, 3262, 3279
CspCI	CAANNNNNGTGG	2 cut(s)	1135, 1170
CviAII	CATG	9 cut(s)	1726, 2645, 2708, 2840, 2858, 2984, 3140, 3175, 3211
CviQI	GTAC	3 cut(s)	3016, 3262, 3279
DinI	GGCGCC	1 cut(s)	1113
DrdI	GACNNNNNNGTC	1 cut(s)	130
DriI	GACNNNNNGTC	1 cut(s)	980
DseDI	GACNNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	2 cut(s)	744, 2065
Eam1104I	CTCTTC	2 cut(s)	2378, 2396
Eam1105I	GACNNNNNGTC	1 cut(s)	980
EarI	CTCTTC	2 cut(s)	2378, 2396
EciI	GGCGGA	1 cut(s)	807
Ecl136II	GAGCTC	2 cut(s)	970, 1260
Eco105I	TACGTA	1 cut(s)	3019
Eco130I	CCWWGG	4 cut(s)	222, 1115, 1899, 2182
Eco147I	AGGCCT	1 cut(s)	3304
Eco24I	GRGCYC	3 cut(s)	166, 972, 1262
Eco31I	GGTCTC	2 cut(s)	208, 3281
Eco32I	GATATC	1 cut(s)	1999
Eco47I	GGWCC	6 cut(s)	136, 953, 1346, 1535, 3121, 3233
Eco53kI	GAGCTC	2 cut(s)	970, 1260
Eco57I	CTGAAG	2 cut(s)	140, 3353
Eco72I	CACGTG	1 cut(s)	1384
Eco88I	CYCGRG	3 cut(s)	113, 455, 3026
Eco91I	GGTNACC	1 cut(s)	2702
EcoICRI	GAGCTC	2 cut(s)	970, 1260
EcoO109I	RGGNCCY	1 cut(s)	703
EcoO65I	GGTNACC	1 cut(s)	2702
EcoRV	GATATC	1 cut(s)	1999
EcoT14I	CCWWGG	4 cut(s)	222, 1115, 1899, 2182
EcoT22I	ATGCAT	1 cut(s)	1594
EcoT38I	GRGCYC	3 cut(s)	166, 972, 1262
EgeI	GGCGCC	1 cut(s)	1113
EheI	GGCGCC	1 cut(s)	1113
ErhI	CCWWGG	4 cut(s)	222, 1115, 1899, 2182
FaeI	CATG	9 cut(s)	1729, 2648, 2711, 2843, 2861, 2987, 3143, 3178, 3214
FalI	AAGNNNNNCTT	2 cut(s)	1122, 1154
FatI	CATG	9 cut(s)	1725, 2644, 2707, 2839, 2857, 2983, 3139, 3174, 3210
FauI	CCCGC	4 cut(s)	970, 1867, 2010, 2880
FbaI	TGATCA	1 cut(s)	178
FblI	GTMKAC	2 cut(s)	155, 2105
Fnu4HI	GCNGC	9 cut(s)	88, 172, 1241, 2068, 2209, 2226, 2256, 2963, 3089
FriOI	GRGCYC	3 cut(s)	166, 972, 1262
Fsp4HI	GCNGC	9 cut(s)	88, 172, 1241, 2068, 2209, 2226, 2256, 2963, 3089
FspBI	CTAG	6 cut(s)	936, 1491, 1935, 2787, 2958, 3358
GlaI	GCGC	2 cut(s)	1113, 2229
GluI	GCNGC	9 cut(s)	88, 172, 1241, 2068, 2209, 2226, 2256, 2963, 3089
GsaI	CCCAGC	1 cut(s)	2969
GsuI	CTGGAG	4 cut(s)	1224, 1236, 1773, 2565
HaeII	RGCGCY	1 cut(s)	1115
HaeIII	GGCC	9 cut(s)	15, 164, 705, 746, 1134, 1704, 2067, 3230, 3304
HapII	CCGG	5 cut(s)	75, 246, 599, 743, 3231
HhaI	GCGC	2 cut(s)	1114, 2230
Hin1I	GRCGYC	1 cut(s)	1112
Hin1II	CATG	9 cut(s)	1729, 2648, 2711, 2843, 2861, 2987, 3143, 3178, 3214
Hin6I	GCGC	2 cut(s)	1112, 2228
HinP1I	GCGC	2 cut(s)	1112, 2228
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HindIII	AAGCTT	4 cut(s)	276, 377, 1084, 1280
HpaII	CCGG	5 cut(s)	75, 246, 599, 743, 3231
HphI	GGTGA	8 cut(s)	173, 359, 375, 458, 1189, 2006, 2256, 2683
Hpy166II	GTNNAC	5 cut(s)	156, 1180, 1617, 2106, 3070
Hpy8I	GTNNAC	5 cut(s)	156, 1180, 1617, 2106, 3070
HpyAV	CCTTC	9 cut(s)	750, 1052, 1124, 1559, 2085, 2613, 2661, 3052, 3209
HpyCH4IV	ACGT	3 cut(s)	1383, 3018, 3204
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 1118, 1598, 1731
HpySE526I	ACGT	3 cut(s)	1383, 3018, 3204
Hsp92I	GRCGYC	1 cut(s)	1112
Hsp92II	CATG	9 cut(s)	1729, 2648, 2711, 2843, 2861, 2987, 3143, 3178, 3214
HspAI	GCGC	2 cut(s)	1112, 2228
KasI	GGCGCC	1 cut(s)	1111
Ksp22I	TGATCA	1 cut(s)	178
LmnI	GCTCC	4 cut(s)	662, 1067, 1958, 2305
Lsp1109I	GCAGC	6 cut(s)	183, 1227, 2212, 2242, 2949, 3075
LweI	GCATC	7 cut(s)	1220, 1744, 2079, 2345, 2360, 2715, 3246
MabI	ACCWGGT	2 cut(s)	2269, 2685
MaeI	CTAG	6 cut(s)	936, 1491, 1935, 2787, 2958, 3358
MaeII	ACGT	3 cut(s)	1383, 3018, 3204
MaeIII	GTNAC	9 cut(s)	266, 843, 1210, 1520, 1947, 2528, 2689, 2702, 3074
MfeI	CAATTG	2 cut(s)	1147, 2325
MflI	RGATCY	7 cut(s)	734, 1399, 1736, 1792, 2096, 2783, 2792
MhlI	GDGCHC	6 cut(s)	166, 972, 1262, 1379, 1389, 2302
Mly113I	GGCGCC	1 cut(s)	1112
MlyI	GAGTC	3 cut(s)	206, 1419, 1740
MmeI	TCCRAC	6 cut(s)	75, 114, 453, 492, 1567, 2596
Mph1103I	ATGCAT	1 cut(s)	1594
MroXI	GAANNNNTTC	3 cut(s)	379, 1196, 1613
MslI	CAYNNNNRTG	5 cut(s)	671, 783, 2712, 2889, 3144
MspA1I	CMGCKG	2 cut(s)	90, 965
MspI	CCGG	5 cut(s)	75, 246, 599, 743, 3231
MunI	CAATTG	2 cut(s)	1147, 2325
Mva1269I	GAATGC	3 cut(s)	885, 1000, 2935
MvnI	CGCG	1 cut(s)	2875
MwoI	GCNNNNNNNGC	4 cut(s)	84, 1118, 1598, 1731
NarI	GGCGCC	1 cut(s)	1112
NciI	CCSGG	1 cut(s)	247
NheI	GCTAGC	1 cut(s)	1934
NlaIII	CATG	9 cut(s)	1729, 2648, 2711, 2843, 2861, 2987, 3143, 3178, 3214
NmeAIII	GCCGAG	1 cut(s)	552
NmuCI	GTSAC	1 cut(s)	1210
NsiI	ATGCAT	1 cut(s)	1594
NspI	RCATGY	2 cut(s)	2987, 3178
NspV	TTCGAA	2 cut(s)	611, 866
PaeI	GCATGC	2 cut(s)	2987, 3178
PaeR7I	CTCGAG	1 cut(s)	113
PceI	AGGCCT	1 cut(s)	3304
PcsI	WCGNNNNNNNCGW	1 cut(s)	3024
PctI	GAATGC	3 cut(s)	885, 1000, 2935
PdmI	GAANNNNTTC	3 cut(s)	379, 1196, 1613
PflMI	CCANNNNNTGG	2 cut(s)	1484, 1796
PfoI	TCCNGGA	2 cut(s)	2302, 2581
PkrI	GCNGC	9 cut(s)	89, 173, 1242, 2069, 2210, 2227, 2257, 2964, 3090
PleI	GAGTC	3 cut(s)	206, 1418, 1740
PluTI	GGCGCC	1 cut(s)	1115
PmaCI	CACGTG	1 cut(s)	1384
PmlI	CACGTG	1 cut(s)	1384
PpsI	GAGTC	3 cut(s)	206, 1418, 1740
Ppu21I	YACGTR	2 cut(s)	1384, 3019
Psp124BI	GAGCTC	2 cut(s)	972, 1262
PspCI	CACGTG	1 cut(s)	1384
PspEI	GGTNACC	1 cut(s)	2702
PspFI	CCCAGC	1 cut(s)	2965
PspOMI	GGGCCC	1 cut(s)	162
PspPI	GGNCC	9 cut(s)	136, 162, 163, 703, 953, 1346, 1535, 3121, 3233
PspXI	VCTCGAGB	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	1245
PstNI	CAGNNNCTG	1 cut(s)	1249
PsuI	RGATCY	7 cut(s)	734, 1399, 1736, 1792, 2096, 2783, 2792
RsaI	GTAC	3 cut(s)	3017, 3263, 3280
RsaNI	GTAC	3 cut(s)	3016, 3262, 3279
RseI	CAYNNNNRTG	5 cut(s)	671, 783, 2712, 2889, 3144
SacI	GAGCTC	2 cut(s)	972, 1262
SalI	GTCGAC	1 cut(s)	154
SatI	GCNGC	9 cut(s)	88, 172, 1241, 2068, 2209, 2226, 2256, 2963, 3089
Sau96I	GGNCC	9 cut(s)	136, 162, 163, 703, 953, 1346, 1535, 3121, 3233
SchI	GAGTC	3 cut(s)	206, 1419, 1740
SduI	GDGCHC	6 cut(s)	166, 972, 1262, 1379, 1389, 2302
SexAI	ACCWGGT	2 cut(s)	2269, 2685
SfaNI	GCATC	7 cut(s)	1220, 1744, 2079, 2345, 2360, 2715, 3246
SfcI	CTRYAG	2 cut(s)	1241, 2170
SfoI	GGCGCC	1 cut(s)	1113
Sfr274I	CTCGAG	1 cut(s)	113
SfuI	TTCGAA	2 cut(s)	611, 866
SinI	GGWCC	6 cut(s)	136, 953, 1346, 1535, 3121, 3233
SlaI	CTCGAG	1 cut(s)	113
SmiMI	CAYNNNNRTG	5 cut(s)	671, 783, 2712, 2889, 3144
SmlI	CTYRAG	5 cut(s)	113, 497, 773, 1828, 1886
SmoI	CTYRAG	5 cut(s)	113, 497, 773, 1828, 1886
SnaBI	TACGTA	1 cut(s)	3019
SphI	GCATGC	2 cut(s)	2987, 3178
SseBI	AGGCCT	1 cut(s)	3304
SspDI	GGCGCC	1 cut(s)	1111
SspI	AATATT	1 cut(s)	2497
SspMI	CTAG	6 cut(s)	936, 1491, 1935, 2787, 2958, 3358
SstI	GAGCTC	2 cut(s)	972, 1262
StuI	AGGCCT	1 cut(s)	3304
StyI	CCWWGG	4 cut(s)	222, 1115, 1899, 2182
TaiI	ACGT	3 cut(s)	1386, 3021, 3207
TaqI	TCGA	8 cut(s)	114, 155, 215, 318, 611, 866, 992, 1128
TatI	WGTACW	2 cut(s)	3261, 3278
TauI	GCSGC	3 cut(s)	90, 2070, 2211
TscAI	CASTG	8 cut(s)	191, 1207, 1327, 1333, 1377, 1537, 1624, 2719
TseFI	GTSAC	1 cut(s)	1210
TseI	GCWGC	6 cut(s)	171, 1240, 2225, 2255, 2962, 3088
Tsp45I	GTSAC	1 cut(s)	1210
TspDTI	ATGAA	7 cut(s)	666, 999, 1071, 2130, 2180, 3199, 3326
TspGWI	ACGGA	2 cut(s)	862, 2480
TspRI	CASTG	8 cut(s)	191, 1207, 1327, 1333, 1377, 1537, 1624, 2719
Van91I	CCANNNNNTGG	2 cut(s)	1484, 1796
VpaK11BI	GGWCC	6 cut(s)	136, 953, 1346, 1535, 3121, 3233
XbaI	TCTAGA	2 cut(s)	935, 2786
XceI	RCATGY	2 cut(s)	2987, 3178
XhoI	CTCGAG	1 cut(s)	113
XmiI	GTMKAC	2 cut(s)	155, 2105
XmnI	GAANNNNTTC	3 cut(s)	379, 1196, 1613
XspI	CTAG	6 cut(s)	936, 1491, 1935, 2787, 2958, 3358
Zsp2I	ATGCAT	1 cut(s)	1594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.