Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0012825

Physical Location & Seq

Genomic Coordinates Forward (+)

6611610 .. 6615924

Gene Structure 4315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006378

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3405 bp

ATGAGATGGTGTGGCGTCAGAAACACACTGTTTTTCCTCAAAGTCTTCTCCTTTTTGTTGTGCTTTTCAGTTTCCGGCGACAAAAACCGCTGGTCGGAGAAGTCGGTTCTGCTCGAGCTGAAGACCTCGGTGTCGGACCCAGATGGGGTTCTGTCGACCTGGGTCGACGGCAGCTCTGATCACCACTGTTCCTGGTTCGGGGTCTCCTGCGACTCGAAATCCAAGGTTGTCTCGCTCGGCATAGCCGGGAGTGAAAATAAAGGAGGTAACTTTGAAGCTTTTACCTGCTCTGAGACTGTGAAATTTCAATTTCAGTTTGATGGGTTTGGGGCTTGGAGGAGGAGTGGTGAGGTTAGTGGTGGGAAATTAGGTGGAAAGCTTTCACCTTTGGTTGGGAAACTTACTGAGCTTAGAGTTTTATCGCTGCCGTTTAATGAGCTTAGTGGTGAGATTCCCGAGGACGTTTGGGGGTTGGAGAAACTTGAAGTGCTTGATCTTGAGGGTAATTTGTTGGAGGGGAAGTTGCCGAATTGGTTCTCGGGTTTGAGAAAGTTGAGGGTTTTGAATGTTGGGTTTAATAGGATTGGTGGGGAGGTTCCGGTTTCGCTTTCGAAATGTAGGGATTTGGAGGTTTTGAGTTTAGCTGGAAATGAAGTGAGTGGAGCTATTCCCGTGTTTTTTGGTGGTTTTACAAAGTTGCAGGGGCTTTATTTGGCTCAAAATAGGTTAAATGGATCTATTCCGGCCAAATTTGGAAGGTCTTGTTTGAATCTTGAGCATTTTGATGTGTCAGGGAATTTCCTTGTTGGGAAGATTCCGCGTACTTTGGGGAGTTGTCTGCGGTTACGGACACTATTGTTGTTTTCGAATACTCTGGATGGTGGCATTCCTGGTGAACTTGGTAAGATTCGGGGACTTGAAGTTCTGGATGTGTCTAGAAATAGCCTTAGCGGTCCAATCCCCGCTGAGCTCGGACAATGTGTCAATTTGTCGGTACTTGTCCTGTCGAATCTCTTTAATCCGTTGCCAATCAATCAGAATGCAAATGGAGATTCATCGGTTGAGTTAGATAATGGAGTGGATGATGATTACAATTTTTATGAAGGCTCCATTCCCCAGGAGATTACAAGCTTACCAAATTTGAGAATAGTTTGGGCGCCAAGGGCAACCCTCGAAGGCCAGCTTCCGAGCAGTTGGGGTGGTTGTGAGAACTTGGAAATGGTGAACTTGGCTCAGAACCTTTTCACTGGAGAATTGATTGGAGTGTTTGATAGATGCAAGAAGCTGCAGTATCTGAATTTGAGCTCAAATAAGCTGAGTGGGAAGCTTGATGACAAACTCCCAGTTCCTTGTATGACCGTTTTCAGTGTCAGTGGGAACCTCTTGTCTGGATCCATCCCCACATTTAATTTCGCAGTGTGCCCCCACGTGCCCCGAAATTCAGATCTTGTCCGAGTCCAGAATCCATCATTTGCATATCAAGTTCTCTTTACTTGCAGAACTTATCTTGACACCCATTTACCACTTTTTGGTGCTAGTTTCACATTGATTCACGATTTTAGTGGTAACAACTTCACTGGTCCAATCCAACACCTTCCTCTTGCACCTCAGAGGTTGGGGAAGCGAACTGTTTATGCATTTCTTGCTGGTGGGAACATGTTCACTGGATCATTTGCTGAAACCTTAAAAGGAAAGTGTGATGGCTTACATGGAATGATATTTAATGTTAGCAACAACAAGTTATCAGGCCACATACCTTTCAAGAATGGCATGATGTGCAGATCTCTTAGACTCTTGGATGCCTCTGGAAATCTCTTAGCTGGGTCAATACCTCCAGATCTTGGGGATGTGAAGCCTCTTGTCTTTCTTGACTTGAGCAGGAACCAGTTGCAGGGTCAAATTCCCGCAGGTATCAGTAATTTAAAGTATCTCAAGTATCTGTCCTTGGCTAGTAACAACCTTACTGGTACGATTCCTACTAGCTTTGTGGAGTTACGCTCCCTTGAAGTGTTAAAGCTATCTTCAAACTCTCTTTCTGGTGATATCCCACAAGGTCTTGTTAAGTTGAAAAACCTAACTATTTTTATGCTTGACAACAATAAGCTCTCTGGCCGCATCCCCTCTGGTTTGACTAATGTGAGATCCCTGTCTACATTTAATGTCTCATATAATAACCTGTCTGGTTCATTTCCATTGAACAATAATATGATGAACTGTAGTGGTGTCCTGGGAAACCCTTTCGTTAATCAATGCCGCATTGTTTCCCTCGCTGCGCCATACTCAGCTCAGCCAGGTAGCTCTGCCAATTCACCATCGGGTAGTTCTGATTCTCAGTCAGCAAGTGCTCCTGGAAAGGATGGGATAAACTCAATTGAGATTGCATCCATAGTATCTGCATCAGCTATCGTGTTGGTTCTCTTCACTCTTGTTATCCTCTTCTTTTACACAAGAAAATGGATTCCAGATTCCAGAGTTCAGGGTTTTGAAAATAAAGAAATTACAATTTTCACAGAAATTGGGGCACCATTGACGTTTGAGAATATTGTTCAAGCAACAGGGAATTTTAATGCCAGTAACTACATTGGGAGTGGGGGATTTGGGGCAACTTACAAAGCAGAAATCGCTCCAGGAACCATAATAGCTGTAAAGAGGCTTGCCGTTGGAAGGTTTCACGGTGTTCAACAGTTCCATGCCGAGATTAAGACCCTCGGAAGGGTGAGACACCCCAACCTGGTAACTTTAATAGGTTACCATGCCAGTGAAACCGAGATGCTACTCATATATAATTATTTACCTGGAGGGAATTTGGAAAATTTTATTCAGGAAAGATCTAGAAGATCTTTTACTTGGAAGATTCTCCACAAGATTGCTCTGGATATTGCCCATGCACTTTCTTATCTGCATGACGAGTGTATCCCGCGTGTCCTACACCGTGATGTCAAGCCAAGCAATATACTGTTAGATGATAACTTTAATGCTTATTTGTCTGACTTTGGATTGTCTAGGCTGCTGGGAACTTCTGAAACGCATGCTACAACTGGTGTTGCAGGAACTTTTGGGTACGTAGCACCCGAGTATGCTATGACCTGTCGTGTGTCTGAGAAGGCTGATGTTTACAGTTACGGTGTTGTGCTGCTTGAATTGATTTCTGATAAGAAAGCCCTGGACCCATCATTTTCTTCACATGGAAATGGTTTCAACATTGTTTCTTGGGCGTGCATGCTGTTAAGAATGGGTCGGGCTAAGGACGTATTCATGGAAGGACTATGGGAGGCCGGACCCGAAGATGATCTGGTTGAGATGCTGTACTTGGCTGTCAAATGTACTGTTGAGACCCTCTCCATTAGGCCTACAATGAAGCAAGCTGTCCAAATACTGAAGCGAATACAACCTGCTTCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009698 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009808 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009908 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010035 GO:0010073 GO:0010152 GO:0010154 GO:0016020 GO:0016043 GO:0019748 GO:0021700 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0042221 GO:0043933 GO:0044085 GO:0044237 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048508 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051260 GO:0051704 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0099402 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

1135

Amino Acids

123.51

Weight (kDa)

7.92

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 71	4.3e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	131 - 252	1.8e-08	Leucine-rich repeat region
LRR_8	PF13855	136 - 195	1.1e-08	Leucine rich repeat
LRR_14	PF23598	594 - 720	3.2e-10	Leucine-rich repeat region
LRR_8	PF13855	623 - 678	4.5e-09	Leucine rich repeat
Pkinase	PF00069	857 - 1058	8.2e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	858 - 1071	4.9e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69270
fragaria_vesca	FvH4_4g29970
malus_domestica	MD13G1062000.v1.1 MD16G1060500.v1.1
prunus_persica	Prupe.1G287800_v2.0.a1
pyrus_communis	pycom13g05450 pycom16g05270
rosa_chinensis	RchiOBHm_Chr4g0438241
rosa_laevigata	RLG00000006378
rosa_multiflora	Rmu_sc0002682.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379330
rosa_rugosa	Rorug04G0308300
rosa_samantha	Rh4AG359300 Rh4BG370100 Rh4CG384300 Rh4DG365200
rosa_wichuraiana	Rw0G006390 Rw0G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	130
Acc36I	ACCTGC	3 cut(s)	293, 1898, 3400
AccB1I	GGYRCC	2 cut(s)	1156, 2521
AccB7I	CCANNNNNTGG	2 cut(s)	1529, 1841
AccI	GTMKAC	3 cut(s)	155, 165, 2150
AccII	CGCG	2 cut(s)	820, 2920
AciI	CCGC	9 cut(s)	88, 818, 841, 951, 963, 1905, 2113, 2254, 2918
AclWI	GGATC	5 cut(s)	742, 1386, 1399, 1675, 2136
AcoI	YGGCCR	2 cut(s)	744, 2110
AcuI	CTGAAG	2 cut(s)	140, 3398
AcvI	CACGTG	1 cut(s)	1429
AcyI	GRCGYC	2 cut(s)	15, 1157
AfaI	GTAC	6 cut(s)	823, 996, 1969, 3062, 3308, 3325
AflIII	ACRYGT	1 cut(s)	1656
AhdI	GACNNNNNGTC	1 cut(s)	980
AloI	GAACNNNNNNTCC	2 cut(s)	906, 938
Alw21I	GWGCWC	3 cut(s)	972, 1307, 2347
Alw26I	GTCTC	6 cut(s)	208, 235, 287, 2167, 2713, 3326
AlwI	GGATC	5 cut(s)	742, 1386, 1399, 1675, 2136
AlwNI	CAGNNNCTG	1 cut(s)	1294
Ama87I	CYCGRG	4 cut(s)	113, 455, 538, 3071
AoxI	GGCC	6 cut(s)	744, 1177, 1747, 2110, 3273, 3347
ApeKI	GCWGC	6 cut(s)	171, 424, 1285, 2270, 3007, 3133
Asp700I	GAANNNNTTC	4 cut(s)	379, 533, 1241, 1658
AspLEI	GCGC	2 cut(s)	1159, 2275
AspS9I	GGNCC	5 cut(s)	136, 953, 1580, 3166, 3278
AsuC2I	CCSGG	1 cut(s)	247
AsuHPI	GGTGA	9 cut(s)	173, 359, 375, 458, 905, 1234, 2051, 2301, 2728
AsuII	TTCGAA	2 cut(s)	611, 866
AvaI	CYCGRG	4 cut(s)	113, 455, 538, 3071
AvaII	GGWCC	5 cut(s)	136, 953, 1580, 3166, 3278
BaeGI	GKGCMC	3 cut(s)	1424, 1434, 2524
BaeI	ACNNNNGTAYC	2 cut(s)	2896, 2929
BamHI	GGATCC	1 cut(s)	1391
BanI	GGYRCC	2 cut(s)	1156, 2521
BanII	GRGCYC	2 cut(s)	972, 1307
BarI	GAAGNNNNNNTAC	2 cut(s)	2827, 2859
BbrPI	CACGTG	1 cut(s)	1429
BbsI	GAAGAC	2 cut(s)	37, 128
Bbv12I	GWGCWC	3 cut(s)	972, 1307, 2347
BbvI	GCAGC	6 cut(s)	183, 411, 1272, 2257, 2994, 3120
BccI	CCATC	9 cut(s)	137, 314, 872, 1403, 1474, 1694, 2320, 2351, 3178
BceAI	ACGGC	3 cut(s)	184, 412, 2642
BciVI	GTATCC	1 cut(s)	2924
BclI	TGATCA	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	247
BcoDI	GTCTC	6 cut(s)	208, 235, 287, 2167, 2713, 3326
BfaI	CTAG	7 cut(s)	936, 1536, 1950, 1980, 2832, 3003, 3403
BfmI	CTRYAG	2 cut(s)	1286, 2215
BfoI	RGCGCY	1 cut(s)	1160
BfuAI	ACCTGC	3 cut(s)	293, 1898, 3400
BfuI	GTATCC	1 cut(s)	2924
BglII	AGATCT	5 cut(s)	1444, 1781, 1837, 2828, 2837
BisI	GCNGC	8 cut(s)	172, 425, 1286, 2113, 2254, 2271, 3008, 3134
BlpI	GCTNAGC	2 cut(s)	966, 2286
BlsI	GCNGC	8 cut(s)	173, 426, 1287, 2114, 2255, 2272, 3009, 3135
Bme18I	GGWCC	5 cut(s)	136, 953, 1580, 3166, 3278
BmeRI	GACNNNNNGTC	1 cut(s)	980
BmeT110I	CYCGRG	4 cut(s)	113, 455, 538, 3071
BmgT120I	GGNCC	5 cut(s)	136, 953, 1580, 3166, 3278
BmrI	ACTGGG	1 cut(s)	1337
BmsI	GCATC	7 cut(s)	1265, 1789, 2124, 2390, 2405, 2760, 3291
BmuI	ACTGGG	1 cut(s)	1337
BoxI	GACNNNNGTC	1 cut(s)	161
BpiI	GAAGAC	2 cut(s)	37, 128
BplI	GAGNNNNNCTC	4 cut(s)	1982, 2014, 3323, 3355
BpmI	CTGGAG	4 cut(s)	1269, 1818, 2610, 2817
Bpu10I	CCTNAGC	2 cut(s)	947, 3243
Bpu1102I	GCTNAGC	2 cut(s)	966, 2286
Bpu14I	TTCGAA	2 cut(s)	611, 866
BpuEI	CTTGAG	4 cut(s)	518, 794, 1894, 1916
BpuMI	CCSGG	1 cut(s)	247
BsaAI	YACGTR	2 cut(s)	1429, 3064
BsaHI	GRCGYC	2 cut(s)	15, 1157
BsaI	GGTCTC	2 cut(s)	208, 3326
BsaWI	WCCGGW	1 cut(s)	598
BsaXI	ACNNNNNCTCC	6 cut(s)	328, 331, 358, 361, 506, 536
Bse1I	ACTGG	9 cut(s)	1252, 1343, 1582, 1669, 1885, 1969, 2571, 2757, 3043
BseGI	GGATG	9 cut(s)	883, 934, 1087, 1395, 1804, 1852, 2115, 2362, 2381
BseNI	ACTGG	9 cut(s)	1252, 1343, 1582, 1669, 1885, 1969, 2571, 2757, 3043
BseRI	GAGGAG	2 cut(s)	352, 355
BseSI	GKGCMC	3 cut(s)	1424, 1434, 2524
BseXI	GCAGC	6 cut(s)	183, 411, 1272, 2257, 2994, 3120
BseYI	CCCAGC	2 cut(s)	1820, 3010
BsgI	GTGCAG	1 cut(s)	1798
Bsh1236I	CGCG	2 cut(s)	820, 2920
BshFI	GGCC	6 cut(s)	746, 1179, 1749, 2112, 3275, 3349
BshNI	GGYRCC	2 cut(s)	1156, 2521
BsiHKAI	GWGCWC	3 cut(s)	972, 1307, 2347
BsiHKCI	CYCGRG	4 cut(s)	113, 455, 538, 3071
BsiSI	CCGG	5 cut(s)	75, 246, 599, 743, 3276
BslFI	GGGAC	1 cut(s)	927
BsmAI	GTCTC	6 cut(s)	208, 235, 287, 2167, 2713, 3326
BsmFI	GGGAC	1 cut(s)	927
BsmI	GAATGC	2 cut(s)	885, 1045
BsnI	GGCC	6 cut(s)	746, 1179, 1749, 2112, 3275, 3349
Bso31I	GGTCTC	2 cut(s)	208, 3326
BsoBI	CYCGRG	4 cut(s)	113, 455, 538, 3071
Bsp119I	TTCGAA	2 cut(s)	611, 866
Bsp1286I	GDGCHC	6 cut(s)	972, 1307, 1424, 1434, 2347, 2524
Bsp1720I	GCTNAGC	2 cut(s)	966, 2286
BspACI	CCGC	9 cut(s)	88, 818, 841, 951, 963, 1905, 2113, 2254, 2918
BspANI	GGCC	6 cut(s)	746, 1179, 1749, 2112, 3275, 3349
BspFNI	CGCG	2 cut(s)	820, 2920
BspMAI	CTGCAG	1 cut(s)	1290
BspMI	ACCTGC	3 cut(s)	293, 1898, 3400
BspPI	GGATC	5 cut(s)	742, 1386, 1399, 1675, 2136
BspT104I	TTCGAA	2 cut(s)	611, 866
BspT107I	GGYRCC	2 cut(s)	1156, 2521
BspTNI	GGTCTC	2 cut(s)	208, 3326
BsrI	ACTGG	9 cut(s)	1252, 1343, 1582, 1669, 1885, 1969, 2571, 2757, 3043
BssNI	GRCGYC	2 cut(s)	15, 1157
BssT1I	CCWWGG	3 cut(s)	222, 1160, 1944
Bst6I	CTCTTC	2 cut(s)	2423, 2441
BstACI	GRCGYC	2 cut(s)	15, 1157
BstAPI	GCANNNNNTGC	2 cut(s)	1643, 1776
BstBAI	YACGTR	2 cut(s)	1429, 3064
BstBI	TTCGAA	2 cut(s)	611, 866
BstC8I	GCNNGC	6 cut(s)	1181, 2655, 3030, 3217, 3221, 3363
BstEII	GGTNACC	1 cut(s)	2747
BstF5I	GGATG	9 cut(s)	883, 934, 1087, 1395, 1804, 1852, 2115, 2362, 2381
BstFNI	CGCG	2 cut(s)	820, 2920
BstH2I	RGCGCY	1 cut(s)	1160
BstHHI	GCGC	2 cut(s)	1159, 2275
BstMAI	GTCTC	6 cut(s)	208, 235, 287, 2167, 2713, 3326
BstMWI	GCNNNNNNNGC	4 cut(s)	1163, 1643, 1776, 2621
BstNSI	RCATGY	3 cut(s)	1660, 3032, 3223
BstPAI	GACNNNNGTC	1 cut(s)	161
BstPI	GGTNACC	1 cut(s)	2747
BstSFI	CTRYAG	2 cut(s)	1286, 2215
BstSLI	GKGCMC	3 cut(s)	1424, 1434, 2524
BstSNI	TACGTA	1 cut(s)	3064
BstUI	CGCG	2 cut(s)	820, 2920
BstV1I	GCAGC	6 cut(s)	183, 411, 1272, 2257, 2994, 3120
BstV2I	GAAGAC	2 cut(s)	37, 128
BstX2I	RGATCY	8 cut(s)	734, 1391, 1444, 1781, 1837, 2141, 2828, 2837
BstYI	RGATCY	8 cut(s)	734, 1391, 1444, 1781, 1837, 2141, 2828, 2837
BsuI	GTATCC	1 cut(s)	2924
BsuRI	GGCC	6 cut(s)	746, 1179, 1749, 2112, 3275, 3349
BtsCI	GGATG	9 cut(s)	883, 934, 1087, 1395, 1804, 1852, 2115, 2362, 2381
BtsI	GCAGTG	1 cut(s)	1422
BtsIMutI	CAGTG	9 cut(s)	26, 184, 1245, 1372, 1378, 1422, 1575, 1662, 2764
BveI	ACCTGC	3 cut(s)	293, 1898, 3400
Cac8I	GCNNGC	6 cut(s)	1181, 2655, 3030, 3217, 3221, 3363
CaiI	CAGNNNCTG	1 cut(s)	1294
CfoI	GCGC	2 cut(s)	1159, 2275
Cfr13I	GGNCC	5 cut(s)	136, 953, 1580, 3166, 3278
CseI	GACGC	1 cut(s)	4
CsiI	ACCWGGT	1 cut(s)	2730
Csp6I	GTAC	6 cut(s)	822, 995, 1968, 3061, 3307, 3324
CviQI	GTAC	6 cut(s)	822, 995, 1968, 3061, 3307, 3324
DinI	GGCGCC	1 cut(s)	1158
DraI	TTTAAA	1 cut(s)	1923
DrdI	GACNNNNNNGTC	1 cut(s)	130
DriI	GACNNNNNGTC	1 cut(s)	980
DseDI	GACNNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	2 cut(s)	744, 2110
Eam1104I	CTCTTC	2 cut(s)	2423, 2441
Eam1105I	GACNNNNNGTC	1 cut(s)	980
EarI	CTCTTC	2 cut(s)	2423, 2441
Ecl136II	GAGCTC	2 cut(s)	970, 1305
Eco105I	TACGTA	1 cut(s)	3064
Eco130I	CCWWGG	3 cut(s)	222, 1160, 1944
Eco147I	AGGCCT	1 cut(s)	3349
Eco24I	GRGCYC	2 cut(s)	972, 1307
Eco31I	GGTCTC	2 cut(s)	208, 3326
Eco32I	GATATC	1 cut(s)	2044
Eco47I	GGWCC	5 cut(s)	136, 953, 1580, 3166, 3278
Eco53kI	GAGCTC	2 cut(s)	970, 1305
Eco57I	CTGAAG	2 cut(s)	140, 3398
Eco72I	CACGTG	1 cut(s)	1429
Eco88I	CYCGRG	4 cut(s)	113, 455, 538, 3071
Eco91I	GGTNACC	1 cut(s)	2747
EcoICRI	GAGCTC	2 cut(s)	970, 1305
EcoO65I	GGTNACC	1 cut(s)	2747
EcoRV	GATATC	1 cut(s)	2044
EcoT14I	CCWWGG	3 cut(s)	222, 1160, 1944
EcoT22I	ATGCAT	1 cut(s)	1639
EcoT38I	GRGCYC	2 cut(s)	972, 1307
EgeI	GGCGCC	1 cut(s)	1158
EheI	GGCGCC	1 cut(s)	1158
ErhI	CCWWGG	3 cut(s)	222, 1160, 1944
FalI	AAGNNNNNCTT	2 cut(s)	1167, 1199
FaqI	GGGAC	1 cut(s)	927
FauI	CCCGC	3 cut(s)	970, 1912, 2925
FbaI	TGATCA	1 cut(s)	178
FblI	GTMKAC	3 cut(s)	155, 165, 2150
Fnu4HI	GCNGC	8 cut(s)	172, 425, 1286, 2113, 2254, 2271, 3008, 3134
FokI	GGATG	9 cut(s)	890, 941, 1094, 1382, 1811, 1859, 2102, 2368, 2369
FriOI	GRGCYC	2 cut(s)	972, 1307
Fsp4HI	GCNGC	8 cut(s)	172, 425, 1286, 2113, 2254, 2271, 3008, 3134
FspBI	CTAG	7 cut(s)	936, 1536, 1950, 1980, 2832, 3003, 3403
GlaI	GCGC	2 cut(s)	1158, 2274
GluI	GCNGC	8 cut(s)	172, 425, 1286, 2113, 2254, 2271, 3008, 3134
GsaI	CCCAGC	2 cut(s)	1824, 3014
GsuI	CTGGAG	4 cut(s)	1269, 1818, 2610, 2817
HaeII	RGCGCY	1 cut(s)	1160
HaeIII	GGCC	6 cut(s)	746, 1179, 1749, 2112, 3275, 3349
HapII	CCGG	5 cut(s)	75, 246, 599, 743, 3276
HgaI	GACGC	1 cut(s)	4
HhaI	GCGC	2 cut(s)	1159, 2275
Hin1I	GRCGYC	2 cut(s)	15, 1157
Hin6I	GCGC	2 cut(s)	1157, 2273
HinP1I	GCGC	2 cut(s)	1157, 2273
HincII	GTYRAC	2 cut(s)	156, 166
HindII	GTYRAC	2 cut(s)	156, 166
HindIII	AAGCTT	4 cut(s)	276, 377, 1129, 1325
HpaII	CCGG	5 cut(s)	75, 246, 599, 743, 3276
HphI	GGTGA	9 cut(s)	173, 359, 375, 458, 905, 1234, 2051, 2301, 2728
Hpy166II	GTNNAC	7 cut(s)	156, 166, 896, 1225, 1662, 2151, 3115
Hpy8I	GTNNAC	7 cut(s)	156, 166, 896, 1225, 1662, 2151, 3115
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	8 cut(s)	750, 1097, 1169, 1604, 2658, 2706, 3097, 3254
HpyCH4IV	ACGT	5 cut(s)	462, 1428, 2531, 3063, 3249
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1163, 1643, 1776, 2621
HpySE526I	ACGT	5 cut(s)	462, 1428, 2531, 3063, 3249
Hsp92I	GRCGYC	2 cut(s)	15, 1157
HspAI	GCGC	2 cut(s)	1157, 2273
KasI	GGCGCC	1 cut(s)	1156
Ksp22I	TGATCA	1 cut(s)	178
LmnI	GCTCC	5 cut(s)	662, 1112, 2003, 2350, 2629
Lsp1109I	GCAGC	6 cut(s)	183, 411, 1272, 2257, 2994, 3120
LweI	GCATC	7 cut(s)	1265, 1789, 2124, 2390, 2405, 2760, 3291
MabI	ACCWGGT	1 cut(s)	2730
MaeI	CTAG	7 cut(s)	936, 1536, 1950, 1980, 2832, 3003, 3403
MaeII	ACGT	5 cut(s)	462, 1428, 2531, 3063, 3249
MaeIII	GTNAC	9 cut(s)	266, 843, 1565, 1952, 1992, 2573, 2734, 2747, 3119
MfeI	CAATTG	1 cut(s)	2370
MflI	RGATCY	8 cut(s)	734, 1391, 1444, 1781, 1837, 2141, 2828, 2837
MhlI	GDGCHC	6 cut(s)	972, 1307, 1424, 1434, 2347, 2524
Mly113I	GGCGCC	1 cut(s)	1157
MlyI	GAGTC	3 cut(s)	206, 1464, 1785
MmeI	TCCRAC	6 cut(s)	75, 114, 453, 492, 1612, 2641
Mph1103I	ATGCAT	1 cut(s)	1639
MroXI	GAANNNNTTC	4 cut(s)	379, 533, 1241, 1658
MslI	CAYNNNNRTG	4 cut(s)	783, 2757, 2934, 3189
MspA1I	CMGCKG	2 cut(s)	90, 965
MspI	CCGG	5 cut(s)	75, 246, 599, 743, 3276
MunI	CAATTG	1 cut(s)	2370
Mva1269I	GAATGC	2 cut(s)	885, 1045
MvnI	CGCG	2 cut(s)	820, 2920
MwoI	GCNNNNNNNGC	4 cut(s)	1163, 1643, 1776, 2621
NarI	GGCGCC	1 cut(s)	1157
NciI	CCSGG	1 cut(s)	247
NmeAIII	GCCGAG	2 cut(s)	216, 2719
NsiI	ATGCAT	1 cut(s)	1639
NspI	RCATGY	3 cut(s)	1660, 3032, 3223
NspV	TTCGAA	2 cut(s)	611, 866
PaeI	GCATGC	2 cut(s)	3032, 3223
PaeR7I	CTCGAG	1 cut(s)	113
PceI	AGGCCT	1 cut(s)	3349
PciI	ACATGT	1 cut(s)	1656
PcsI	WCGNNNNNNNCGW	1 cut(s)	3069
PctI	GAATGC	2 cut(s)	885, 1045
PdmI	GAANNNNTTC	4 cut(s)	379, 533, 1241, 1658
PflMI	CCANNNNNTGG	2 cut(s)	1529, 1841
PfoI	TCCNGGA	2 cut(s)	2347, 2626
PkrI	GCNGC	8 cut(s)	173, 426, 1287, 2114, 2255, 2272, 3009, 3135
PleI	GAGTC	3 cut(s)	206, 1463, 1785
PluTI	GGCGCC	1 cut(s)	1160
PmaCI	CACGTG	1 cut(s)	1429
PmlI	CACGTG	1 cut(s)	1429
PpsI	GAGTC	3 cut(s)	206, 1463, 1785
Ppu21I	YACGTR	2 cut(s)	1429, 3064
PscI	ACATGT	1 cut(s)	1656
PshAI	GACNNNNGTC	1 cut(s)	161
Psp124BI	GAGCTC	2 cut(s)	972, 1307
PspCI	CACGTG	1 cut(s)	1429
PspEI	GGTNACC	1 cut(s)	2747
PspFI	CCCAGC	2 cut(s)	1820, 3010
PspPI	GGNCC	5 cut(s)	136, 953, 1580, 3166, 3278
PspXI	VCTCGAGB	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	1290
PstNI	CAGNNNCTG	1 cut(s)	1294
PsuI	RGATCY	8 cut(s)	734, 1391, 1444, 1781, 1837, 2141, 2828, 2837
RsaI	GTAC	6 cut(s)	823, 996, 1969, 3062, 3308, 3325
RsaNI	GTAC	6 cut(s)	822, 995, 1968, 3061, 3307, 3324
RseI	CAYNNNNRTG	4 cut(s)	783, 2757, 2934, 3189
SacI	GAGCTC	2 cut(s)	972, 1307
SalI	GTCGAC	2 cut(s)	154, 164
SatI	GCNGC	8 cut(s)	172, 425, 1286, 2113, 2254, 2271, 3008, 3134
Sau96I	GGNCC	5 cut(s)	136, 953, 1580, 3166, 3278
SchI	GAGTC	3 cut(s)	206, 1464, 1785
SduI	GDGCHC	6 cut(s)	972, 1307, 1424, 1434, 2347, 2524
SexAI	ACCWGGT	1 cut(s)	2730
SfaNI	GCATC	7 cut(s)	1265, 1789, 2124, 2390, 2405, 2760, 3291
SfcI	CTRYAG	2 cut(s)	1286, 2215
SfoI	GGCGCC	1 cut(s)	1158
Sfr274I	CTCGAG	1 cut(s)	113
SfuI	TTCGAA	2 cut(s)	611, 866
SinI	GGWCC	5 cut(s)	136, 953, 1580, 3166, 3278
SlaI	CTCGAG	1 cut(s)	113
SmiMI	CAYNNNNRTG	4 cut(s)	783, 2757, 2934, 3189
SmlI	CTYRAG	5 cut(s)	113, 497, 773, 1873, 1931
SmoI	CTYRAG	5 cut(s)	113, 497, 773, 1873, 1931
SnaBI	TACGTA	1 cut(s)	3064
SphI	GCATGC	2 cut(s)	3032, 3223
SseBI	AGGCCT	1 cut(s)	3349
SsiI	CCGC	9 cut(s)	88, 818, 841, 951, 963, 1905, 2113, 2254, 2918
SspDI	GGCGCC	1 cut(s)	1156
SspI	AATATT	1 cut(s)	2542
SspMI	CTAG	7 cut(s)	936, 1536, 1950, 1980, 2832, 3003, 3403
SstI	GAGCTC	2 cut(s)	972, 1307
StuI	AGGCCT	1 cut(s)	3349
StyI	CCWWGG	3 cut(s)	222, 1160, 1944
TaiI	ACGT	5 cut(s)	465, 1431, 2534, 3066, 3252
TaqI	TCGA	8 cut(s)	114, 155, 165, 215, 611, 866, 1007, 1173
TatI	WGTACW	2 cut(s)	3306, 3323
TauI	GCSGC	2 cut(s)	2115, 2256
TscAI	CASTG	9 cut(s)	33, 191, 1252, 1372, 1378, 1422, 1582, 1669, 2764
TseI	GCWGC	6 cut(s)	171, 424, 1285, 2270, 3007, 3133
TspDTI	ATGAA	7 cut(s)	666, 1044, 1116, 2175, 2225, 3244, 3371
TspGWI	ACGGA	2 cut(s)	862, 1011
TspRI	CASTG	9 cut(s)	33, 191, 1252, 1372, 1378, 1422, 1582, 1669, 2764
Van91I	CCANNNNNTGG	2 cut(s)	1529, 1841
VpaK11BI	GGWCC	5 cut(s)	136, 953, 1580, 3166, 3278
XbaI	TCTAGA	2 cut(s)	935, 2831
XceI	RCATGY	3 cut(s)	1660, 3032, 3223
XhoI	CTCGAG	1 cut(s)	113
XmiI	GTMKAC	3 cut(s)	155, 165, 2150
XmnI	GAANNNNTTC	4 cut(s)	379, 533, 1241, 1658
XspI	CTAG	7 cut(s)	936, 1536, 1950, 1980, 2832, 3003, 3403
Zsp2I	ATGCAT	1 cut(s)	1639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.