Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0012825

Physical Location & Seq

Genomic Coordinates Reverse (-)

52803285 .. 52806686

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG370100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3402 bp

ATGAGATGGTGTGGCCTCAGAAACACCCTGTTTTCCCTCAAAGTCTTCTCCTTTTTGTTGTGCTTTTCAGTTTCCGGCGACAAAAACCGCTGGTCGGAGAAGTCGGTTCTGCTCGAGCTGAAGACCTCGGTGTCGGACCCAGATGGGGTTCTGTCGACCTGGGCCCACGGCAGCTCTGATCACCACTGTTCCTGGTTCGGGGTCTCCTGCGACTCGAAATCCAAGGTTGTCTCGCTCAGCATAGCCGGGAGTAGTGAAAATAAAGGAGGTAACTTTGAAGCTTTTACTTGCTCTGAGACTGTGAGATTTCAATTTCAGTTCGATGGGTTTGGGGCTTGGAGGAGGAGGAGTGGTGGGAAATTAGGTGGAAAGCTTTCACCTTTGGTTGGGAAACTTACTGAGCTTAGAGTTTTATCGCTGCCGTTTAATGAACTTAGTGGTGAGATTCCCAAGGAGGTTTGGGGGTTAGAGAAACTTGAAGTGCTTGATCTTGAGGGTAATTTGTTGGAGGGGAAGTTGCCGAGTTGGTTCTCGGGTTTGAGAAAGTTGAGGGTTTTGAATGTTGGGTTTAATAGGATTGTTGGGGAGGTTCCGGTTTCGCTTTCGAAATGTAGGGATTTGGAGGTTTTGAGTTTAGCTGGAAATGAAGTGAGTGGAGCCATTCCTGTGTTTTTTGGTGGTTTTGCAAAGTTGCAGGGGCTTTATTTGGCTCAAAATAGGTTGAATGGATCTATTCCGGCCAAATTTGGAAGGTCTTGTTTGAATCTTGAGCATTTTGATGTGTCGGGGAATTTCCTTGTTGGGAAGATTCCGCCTACTTTGGGGACTTGTGTGCGCTTACGGACACTATTGTTGTTTTCGAATACTCTGGACGGTGGCATTCCTGGTGAACTTGGTAAGATTCGGGGGCTTGAAGTTCTGGATGTGTCTAGAAATAGCCTTAGCGGTCCAATCCCCGCTGAGCTCGGACAATGTGTCAATTTGTCGGTACTTGTCCTGTCGAATCTCTTTAATCCGTTGCCAATCAATCAGAATGCAAATGGAGATTCATCGGTTGAGTTATATAAAGGAGTGGATGATGATTACAATTTTTATGAAGGCTCCATTCCCCAGGAGATTACAAGCTTACCAAATTTGAGAATAGTTTGGGCGCCAAGGGCAACCCTCGAAGGCCAGCTTCCGAGCAATTGGGGTGGTTGTGAGAACTTGGAAATGGTGAACTTGGCTCAGAACCTTTTCACTGGAGAAGTGATTGGAGTGTTTGATAGATGCAAGAAGCTGCAGTATCTGAATTTGAGCTCAAATAAGCTGAGTGGGAAGCTTGATGACAAACTCCCAGTTCCTTGTATGACTGTTTTCAGTGTCAGTGGGAACCTCTTGTTTGGATCCATCCCCACATTTAATTTCGCAGTGTGTCCCCACGTGCCCCGAAATTCAGATCTTGTCCGAGTCCAGAATCCATCATTTGCATATCAAGTTCTCTTTACTTGCAGAACTTATCTTGACACCCATTTACCACTTTTTGGTGCTAGTTTCACATTGATTCACGATTTTAGTGGTAACAACTTCACTGGTCCAATCCAACACCTTCCTCTTGCACCTGAGAGATTGGGGAAGCGAACTGTTTATGCATTTCTTGCTGGTGGGAACAAGTTCACTGGATCATTTGCTGAAACCTTAATAGGAAAGTGTGATGGCTTACATGGAATGATATTTAATGTTAGCAACAACAAGTTATCAGGCCACATTCCTTTCAAGATTGGCATGATGTGCAGATCTCTTAGACTCTTGGATGCCTCTGGAAATCTCTTATCTGGGTCAATACCTCCAGATCTTGGGGATGTGAAGCCTCTTGTCTTTCTTGACTTGAGCAGGAACCAGTTGCAGGGTCAAATTCCCGCAGGTATCAGTAATTTGAAGTATCTCAAGTATCTGTCCTTGGCTAATAACAACCTTACTGGTACGATTCCTGCTAGCTTTGTGGAGTTACGCTCCCTTGAAGTGTTAAAGCTATCTTCAAACTCTCTTTCTGGTGATATCCCGCAAGGTCTTGTTAAGTTGAAAAACCTAACTATTTTTATGCTCGACAACAATAAGCTCTCTGGCCGCATCCCTTCTGGTTTGACTAATGTGAGATCCCTGTCTACATTTAATGTCTCATATAATAACCTGTCTGGTTCATTTCCATTGAACAATAATATGATGAACTGTAGCGGTGTCCTTGGAAACCCTTTCGTTAATCAATGCCGCATTGTTTCCCTCGCTGCGCCATACTCAGCTCAGCCAGGTAGCTCTGCCAATTCACCACCAGGTAGTTCTGATTCTCAGTCAGCAAGTGCTCCTCCTGGAAAGGATGGAATAAACTCAATTGAGATTGCATCCATAGTATCTGCATCAGCTATCGTGTTGGTTCTCTTCACTCTTGTTATCCTCTTCTTTTACACAAGAAAATGGATTCCAGATTCCAGAGTTCAGGGTTTTGAAAATAAAGAAATTACAATTTTCACAGAAATTGGGGCACCATTGACGTTTGAGAATATTGTTCAAGCAACAGGGAATTTTAATGCCAGTAACTACATTGGGAGTGGAGGATTTGGGGCAACTTACAAAGCAGAAATCACTCCAGGAACCATAATAGCTGTAAAGAGGCTTGCCGTTGGAAGGTTTCACGGTGTTCAACAGTTCCATGCTGAGATTAAGACCCTCGGAAGGGTGAGACACCCCAACCTGGTAACTTTAATAGGTTACCATGCCAGTGAAACCGAGATGCTACTCATATATAATTATTTACCAGGAGGGAATTTGGAAAATTTTATTCAGGAAAGATCTAGAAGATCTTTTACTTGGAAGATTCTCCACAAGATTGCTCTGGATATTGCCCATGCACTTTCTTATCTGCATGACGAGTGTATCCCGCGTGTCCTACACCGTGATGTCAAGCCAAGCAATATACTGTTAGATGATAACTTGAATGCTTATTTGTCTGACTTTGGATTGTCTAGGCTGCTGGGAACTTCTGAAACGCATGCTACAACTGGTGTTGCAGGAACTTTTGGGTATGTAGCACCCGAGTATGCTATGACCTGTCGTGTGTCTGAGAAGGCTGATGTTTACAGTTACGGTGTTGTGCTGCTTGAATTGATTTCTGATAAGAAAGCCCTGGACCCATCATTTTCTTCACATGGAAATGGTTTCAACATTGTTTCTTGGGCGTGCATGCTGTTAAGAATGGGTCGGGCTAAGGACGTATTCATGGAAGGACTATGGGAGGCCGGACCTGAAGATGATCTGGTTGAGATGCTGTACTTGGCTGTCAAATGTACTGTTGAGACCCTCTCCATTAGGCCTACAATGAAGCAAGTTGTCCAAATACTGAAGCGAATACAACCTGCTTCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009698 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009808 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009908 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010035 GO:0010073 GO:0010152 GO:0010154 GO:0016020 GO:0016043 GO:0019748 GO:0021700 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0042221 GO:0043933 GO:0044085 GO:0044237 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048508 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051260 GO:0051704 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0099402 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

1133

Amino Acids

123.59

Weight (kDa)

8.46

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 71	8.4e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	129 - 215	5.9e-09	Leucine-rich repeat region
LRR_14	PF23598	592 - 718	2.4e-10	Leucine-rich repeat region
LRR_8	PF13855	621 - 676	4e-09	Leucine rich repeat
Pkinase	PF00069	856 - 1057	5.3e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	857 - 1124	8.4e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69270
fragaria_vesca	FvH4_4g29970
malus_domestica	MD13G1062000.v1.1 MD16G1060500.v1.1
prunus_persica	Prupe.1G287800_v2.0.a1
pyrus_communis	pycom13g05450 pycom16g05270
rosa_chinensis	RchiOBHm_Chr4g0438241
rosa_laevigata	RLG00000006378
rosa_multiflora	Rmu_sc0002682.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379330
rosa_rugosa	Rorug04G0308300
rosa_samantha	Rh4AG359300 Rh4BG370100 Rh4CG384300 Rh4DG365200
rosa_wichuraiana	Rw0G006390 Rw0G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	130
Acc36I	ACCTGC	2 cut(s)	1892, 3397
AccB1I	GGYRCC	2 cut(s)	1150, 2518
AccB7I	CCANNNNNTGG	2 cut(s)	1523, 1835
AccI	GTMKAC	2 cut(s)	155, 2144
AccII	CGCG	1 cut(s)	2917
AclWI	GGATC	5 cut(s)	736, 1380, 1393, 1669, 2130
AcoI	YGGCCR	2 cut(s)	738, 2104
AcsI	RAATTY	9 cut(s)	743, 790, 1132, 1291, 1432, 1893, 2557, 2800, 2809
AcuI	CTGAAG	3 cut(s)	140, 3300, 3395
AcvI	CACGTG	1 cut(s)	1423
AcyI	GRCGYC	1 cut(s)	1151
AfaI	GTAC	4 cut(s)	990, 1963, 3305, 3322
AhdI	GACNNNNNGTC	1 cut(s)	974
Alw21I	GWGCWC	3 cut(s)	966, 1301, 2341
Alw26I	GTCTC	6 cut(s)	208, 235, 290, 2161, 2710, 3323
AlwI	GGATC	5 cut(s)	736, 1380, 1393, 1669, 2130
AlwNI	CAGNNNCTG	1 cut(s)	1288
Ama87I	CYCGRG	3 cut(s)	113, 532, 3068
AoxI	GGCC	8 cut(s)	13, 162, 738, 1171, 1741, 2104, 3270, 3344
ApaI	GGGCCC	1 cut(s)	166
ApeKI	GCWGC	6 cut(s)	171, 418, 1279, 2264, 3004, 3130
ApoI	RAATTY	9 cut(s)	743, 790, 1132, 1291, 1432, 1893, 2557, 2800, 2809
Asp700I	GAANNNNTTC	3 cut(s)	373, 1235, 1652
AspLEI	GCGC	3 cut(s)	837, 1153, 2269
AspS9I	GGNCC	7 cut(s)	136, 162, 163, 947, 1574, 3163, 3275
AsuC2I	CCSGG	1 cut(s)	247
AsuHPI	GGTGA	8 cut(s)	173, 369, 452, 899, 1228, 2045, 2295, 2725
AsuII	TTCGAA	2 cut(s)	605, 860
AsuNHI	GCTAGC	1 cut(s)	1973
AvaI	CYCGRG	3 cut(s)	113, 532, 3068
AvaII	GGWCC	5 cut(s)	136, 947, 1574, 3163, 3275
BaeGI	GKGCMC	3 cut(s)	166, 1428, 2521
BaeI	ACNNNNGTAYC	2 cut(s)	2893, 2926
BamHI	GGATCC	1 cut(s)	1385
BanI	GGYRCC	2 cut(s)	1150, 2518
BanII	GRGCYC	3 cut(s)	166, 966, 1301
BarI	GAAGNNNNNNTAC	2 cut(s)	2824, 2856
BbrPI	CACGTG	1 cut(s)	1423
BbsI	GAAGAC	2 cut(s)	37, 128
Bbv12I	GWGCWC	3 cut(s)	966, 1301, 2341
BbvI	GCAGC	6 cut(s)	183, 405, 1266, 2251, 2991, 3117
BccI	CCATC	7 cut(s)	137, 317, 1397, 1468, 1688, 2348, 3175
BceAI	ACGGC	3 cut(s)	184, 406, 2639
BciVI	GTATCC	1 cut(s)	2921
BclI	TGATCA	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	247
BcoDI	GTCTC	6 cut(s)	208, 235, 290, 2161, 2710, 3323
BfaI	CTAG	6 cut(s)	930, 1530, 1974, 2829, 3000, 3400
BfmI	CTRYAG	2 cut(s)	1280, 2209
BfoI	RGCGCY	1 cut(s)	1154
BfuAI	ACCTGC	2 cut(s)	1892, 3397
BfuI	GTATCC	1 cut(s)	2921
BglII	AGATCT	5 cut(s)	1438, 1775, 1831, 2825, 2834
BisI	GCNGC	8 cut(s)	172, 419, 1280, 2107, 2248, 2265, 3005, 3131
BlpI	GCTNAGC	3 cut(s)	236, 960, 2280
BlsI	GCNGC	8 cut(s)	173, 420, 1281, 2108, 2249, 2266, 3006, 3132
Bme18I	GGWCC	5 cut(s)	136, 947, 1574, 3163, 3275
BmeRI	GACNNNNNGTC	1 cut(s)	974
BmeT110I	CYCGRG	3 cut(s)	113, 532, 3068
BmgT120I	GGNCC	7 cut(s)	136, 162, 163, 947, 1574, 3163, 3275
BmrI	ACTGGG	1 cut(s)	1331
BmsI	GCATC	7 cut(s)	1259, 1783, 2118, 2387, 2402, 2757, 3288
BmtI	GCTAGC	1 cut(s)	1977
BmuI	ACTGGG	1 cut(s)	1331
BpiI	GAAGAC	2 cut(s)	37, 128
BplI	GAGNNNNNCTC	4 cut(s)	1976, 2008, 3320, 3352
BpmI	CTGGAG	3 cut(s)	1263, 1812, 2607
Bpu10I	CCTNAGC	2 cut(s)	941, 3240
Bpu1102I	GCTNAGC	3 cut(s)	236, 960, 2280
Bpu14I	TTCGAA	2 cut(s)	605, 860
BpuEI	CTTGAG	4 cut(s)	512, 788, 1888, 1910
BpuMI	CCSGG	1 cut(s)	247
BsaAI	YACGTR	1 cut(s)	1423
BsaHI	GRCGYC	1 cut(s)	1151
BsaI	GGTCTC	2 cut(s)	208, 3323
BsaWI	WCCGGW	1 cut(s)	592
BsaXI	ACNNNNNCTCC	6 cut(s)	334, 337, 364, 367, 500, 530
Bse1I	ACTGG	9 cut(s)	1246, 1337, 1576, 1663, 1879, 1963, 2568, 2754, 3040
BseGI	GGATG	8 cut(s)	928, 1081, 1389, 1798, 1846, 2109, 2359, 2378
BseNI	ACTGG	9 cut(s)	1246, 1337, 1576, 1663, 1879, 1963, 2568, 2754, 3040
BseRI	GAGGAG	4 cut(s)	355, 358, 361, 2331
BseSI	GKGCMC	3 cut(s)	166, 1428, 2521
BseXI	GCAGC	6 cut(s)	183, 405, 1266, 2251, 2991, 3117
BseYI	CCCAGC	1 cut(s)	3007
BsgI	GTGCAG	1 cut(s)	1792
Bsh1236I	CGCG	1 cut(s)	2917
BshFI	GGCC	8 cut(s)	15, 164, 740, 1173, 1743, 2106, 3272, 3346
BshNI	GGYRCC	2 cut(s)	1150, 2518
BsiHKAI	GWGCWC	3 cut(s)	966, 1301, 2341
BsiHKCI	CYCGRG	3 cut(s)	113, 532, 3068
BsiSI	CCGG	5 cut(s)	75, 246, 593, 737, 3273
BslFI	GGGAC	2 cut(s)	838, 1401
BsmAI	GTCTC	6 cut(s)	208, 235, 290, 2161, 2710, 3323
BsmFI	GGGAC	2 cut(s)	838, 1401
BsmI	GAATGC	3 cut(s)	879, 1039, 2977
BsnI	GGCC	8 cut(s)	15, 164, 740, 1173, 1743, 2106, 3272, 3346
Bso31I	GGTCTC	2 cut(s)	208, 3323
BsoBI	CYCGRG	3 cut(s)	113, 532, 3068
Bsp119I	TTCGAA	2 cut(s)	605, 860
Bsp120I	GGGCCC	1 cut(s)	162
Bsp1286I	GDGCHC	6 cut(s)	166, 966, 1301, 1428, 2341, 2521
Bsp1720I	GCTNAGC	3 cut(s)	236, 960, 2280
BspANI	GGCC	8 cut(s)	15, 164, 740, 1173, 1743, 2106, 3272, 3346
BspFNI	CGCG	1 cut(s)	2917
BspMAI	CTGCAG	1 cut(s)	1284
BspMI	ACCTGC	2 cut(s)	1892, 3397
BspOI	GCTAGC	1 cut(s)	1977
BspPI	GGATC	5 cut(s)	736, 1380, 1393, 1669, 2130
BspT104I	TTCGAA	2 cut(s)	605, 860
BspT107I	GGYRCC	2 cut(s)	1150, 2518
BspTNI	GGTCTC	2 cut(s)	208, 3323
BsrI	ACTGG	9 cut(s)	1246, 1337, 1576, 1663, 1879, 1963, 2568, 2754, 3040
BssNI	GRCGYC	1 cut(s)	1151
BssT1I	CCWWGG	5 cut(s)	222, 450, 1154, 1938, 2221
Bst6I	CTCTTC	2 cut(s)	2420, 2438
BstACI	GRCGYC	1 cut(s)	1151
BstAPI	GCANNNNNTGC	2 cut(s)	1637, 1770
BstBAI	YACGTR	1 cut(s)	1423
BstBI	TTCGAA	2 cut(s)	605, 860
BstC8I	GCNNGC	6 cut(s)	1175, 1975, 2652, 3027, 3214, 3218
BstDSI	CCRYGG	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	2744
BstF5I	GGATG	8 cut(s)	928, 1081, 1389, 1798, 1846, 2109, 2359, 2378
BstFNI	CGCG	1 cut(s)	2917
BstH2I	RGCGCY	1 cut(s)	1154
BstHHI	GCGC	3 cut(s)	837, 1153, 2269
BstMAI	GTCTC	6 cut(s)	208, 235, 290, 2161, 2710, 3323
BstMWI	GCNNNNNNNGC	3 cut(s)	1157, 1637, 1770
BstNSI	RCATGY	2 cut(s)	3029, 3220
BstPI	GGTNACC	1 cut(s)	2744
BstSFI	CTRYAG	2 cut(s)	1280, 2209
BstSLI	GKGCMC	3 cut(s)	166, 1428, 2521
BstUI	CGCG	1 cut(s)	2917
BstV1I	GCAGC	6 cut(s)	183, 405, 1266, 2251, 2991, 3117
BstV2I	GAAGAC	2 cut(s)	37, 128
BstX2I	RGATCY	8 cut(s)	728, 1385, 1438, 1775, 1831, 2135, 2825, 2834
BstYI	RGATCY	8 cut(s)	728, 1385, 1438, 1775, 1831, 2135, 2825, 2834
BsuI	GTATCC	1 cut(s)	2921
BsuRI	GGCC	8 cut(s)	15, 164, 740, 1173, 1743, 2106, 3272, 3346
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	8 cut(s)	928, 1081, 1389, 1798, 1846, 2109, 2359, 2378
BtsI	GCAGTG	1 cut(s)	1416
BtsIMutI	CAGTG	8 cut(s)	184, 1239, 1366, 1372, 1416, 1569, 1656, 2761
BveI	ACCTGC	2 cut(s)	1892, 3397
Cac8I	GCNNGC	6 cut(s)	1175, 1975, 2652, 3027, 3214, 3218
CaiI	CAGNNNCTG	1 cut(s)	1288
CfoI	GCGC	3 cut(s)	837, 1153, 2269
Cfr13I	GGNCC	7 cut(s)	136, 162, 163, 947, 1574, 3163, 3275
CsiI	ACCWGGT	2 cut(s)	2308, 2727
Csp6I	GTAC	4 cut(s)	989, 1962, 3304, 3321
CspCI	CAANNNNNGTGG	2 cut(s)	1174, 1209
CviQI	GTAC	4 cut(s)	989, 1962, 3304, 3321
DinI	GGCGCC	1 cut(s)	1152
DrdI	GACNNNNNNGTC	1 cut(s)	130
DriI	GACNNNNNGTC	1 cut(s)	974
DseDI	GACNNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	2 cut(s)	738, 2104
Eam1104I	CTCTTC	2 cut(s)	2420, 2438
Eam1105I	GACNNNNNGTC	1 cut(s)	974
EarI	CTCTTC	2 cut(s)	2420, 2438
EciI	GGCGGA	1 cut(s)	801
Ecl136II	GAGCTC	2 cut(s)	964, 1299
Eco130I	CCWWGG	5 cut(s)	222, 450, 1154, 1938, 2221
Eco147I	AGGCCT	1 cut(s)	3346
Eco24I	GRGCYC	3 cut(s)	166, 966, 1301
Eco31I	GGTCTC	2 cut(s)	208, 3323
Eco32I	GATATC	1 cut(s)	2038
Eco47I	GGWCC	5 cut(s)	136, 947, 1574, 3163, 3275
Eco53kI	GAGCTC	2 cut(s)	964, 1299
Eco57I	CTGAAG	3 cut(s)	140, 3300, 3395
Eco72I	CACGTG	1 cut(s)	1423
Eco88I	CYCGRG	3 cut(s)	113, 532, 3068
Eco91I	GGTNACC	1 cut(s)	2744
EcoICRI	GAGCTC	2 cut(s)	964, 1299
EcoO65I	GGTNACC	1 cut(s)	2744
EcoRV	GATATC	1 cut(s)	2038
EcoT14I	CCWWGG	5 cut(s)	222, 450, 1154, 1938, 2221
EcoT22I	ATGCAT	1 cut(s)	1633
EcoT38I	GRGCYC	3 cut(s)	166, 966, 1301
EgeI	GGCGCC	1 cut(s)	1152
EheI	GGCGCC	1 cut(s)	1152
ErhI	CCWWGG	5 cut(s)	222, 450, 1154, 1938, 2221
FalI	AAGNNNNNCTT	2 cut(s)	1161, 1193
FaqI	GGGAC	2 cut(s)	838, 1401
FauI	CCCGC	4 cut(s)	964, 1906, 2049, 2922
FbaI	TGATCA	1 cut(s)	178
FblI	GTMKAC	2 cut(s)	155, 2144
Fnu4HI	GCNGC	8 cut(s)	172, 419, 1280, 2107, 2248, 2265, 3005, 3131
FokI	GGATG	8 cut(s)	935, 1088, 1376, 1805, 1853, 2096, 2365, 2366
FriOI	GRGCYC	3 cut(s)	166, 966, 1301
Fsp4HI	GCNGC	8 cut(s)	172, 419, 1280, 2107, 2248, 2265, 3005, 3131
FspBI	CTAG	6 cut(s)	930, 1530, 1974, 2829, 3000, 3400
GlaI	GCGC	3 cut(s)	836, 1152, 2268
GluI	GCNGC	8 cut(s)	172, 419, 1280, 2107, 2248, 2265, 3005, 3131
GsaI	CCCAGC	1 cut(s)	3011
GsuI	CTGGAG	3 cut(s)	1263, 1812, 2607
HaeII	RGCGCY	1 cut(s)	1154
HaeIII	GGCC	8 cut(s)	15, 164, 740, 1173, 1743, 2106, 3272, 3346
HapII	CCGG	5 cut(s)	75, 246, 593, 737, 3273
HhaI	GCGC	3 cut(s)	837, 1153, 2269
Hin1I	GRCGYC	1 cut(s)	1151
Hin6I	GCGC	3 cut(s)	835, 1151, 2267
HinP1I	GCGC	3 cut(s)	835, 1151, 2267
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HindIII	AAGCTT	4 cut(s)	279, 371, 1123, 1319
HpaII	CCGG	5 cut(s)	75, 246, 593, 737, 3273
HphI	GGTGA	8 cut(s)	173, 369, 452, 899, 1228, 2045, 2295, 2725
Hpy166II	GTNNAC	6 cut(s)	156, 890, 1219, 1656, 2145, 3112
Hpy8I	GTNNAC	6 cut(s)	156, 890, 1219, 1656, 2145, 3112
HpyAV	CCTTC	9 cut(s)	744, 1091, 1163, 1598, 2124, 2655, 2703, 3094, 3251
HpyCH4IV	ACGT	3 cut(s)	1422, 2528, 3246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1157, 1637, 1770
HpySE526I	ACGT	3 cut(s)	1422, 2528, 3246
Hsp92I	GRCGYC	1 cut(s)	1151
HspAI	GCGC	3 cut(s)	835, 1151, 2267
KasI	GGCGCC	1 cut(s)	1150
Ksp22I	TGATCA	1 cut(s)	178
LmnI	GCTCC	4 cut(s)	656, 1106, 1997, 2344
Lsp1109I	GCAGC	6 cut(s)	183, 405, 1266, 2251, 2991, 3117
LweI	GCATC	7 cut(s)	1259, 1783, 2118, 2387, 2402, 2757, 3288
MabI	ACCWGGT	2 cut(s)	2308, 2727
MaeI	CTAG	6 cut(s)	930, 1530, 1974, 2829, 3000, 3400
MaeII	ACGT	3 cut(s)	1422, 2528, 3246
MaeIII	GTNAC	7 cut(s)	269, 1559, 1986, 2570, 2731, 2744, 3116
MfeI	CAATTG	2 cut(s)	1186, 2367
MflI	RGATCY	8 cut(s)	728, 1385, 1438, 1775, 1831, 2135, 2825, 2834
MhlI	GDGCHC	6 cut(s)	166, 966, 1301, 1428, 2341, 2521
Mly113I	GGCGCC	1 cut(s)	1151
MlyI	GAGTC	3 cut(s)	206, 1458, 1779
MmeI	TCCRAC	5 cut(s)	75, 114, 486, 1606, 2638
Mph1103I	ATGCAT	1 cut(s)	1633
MroXI	GAANNNNTTC	3 cut(s)	373, 1235, 1652
MslI	CAYNNNNRTG	5 cut(s)	665, 777, 2754, 2931, 3186
MspA1I	CMGCKG	2 cut(s)	90, 959
MspI	CCGG	5 cut(s)	75, 246, 593, 737, 3273
MunI	CAATTG	2 cut(s)	1186, 2367
Mva1269I	GAATGC	3 cut(s)	879, 1039, 2977
MvnI	CGCG	1 cut(s)	2917
MwoI	GCNNNNNNNGC	3 cut(s)	1157, 1637, 1770
NarI	GGCGCC	1 cut(s)	1151
NciI	CCSGG	1 cut(s)	247
NheI	GCTAGC	1 cut(s)	1973
NmeAIII	GCCGAG	1 cut(s)	546
NsiI	ATGCAT	1 cut(s)	1633
NspI	RCATGY	2 cut(s)	3029, 3220
NspV	TTCGAA	2 cut(s)	605, 860
PaeI	GCATGC	2 cut(s)	3029, 3220
PaeR7I	CTCGAG	1 cut(s)	113
PceI	AGGCCT	1 cut(s)	3346
PctI	GAATGC	3 cut(s)	879, 1039, 2977
PdmI	GAANNNNTTC	3 cut(s)	373, 1235, 1652
PflMI	CCANNNNNTGG	2 cut(s)	1523, 1835
PfoI	TCCNGGA	2 cut(s)	2344, 2623
PkrI	GCNGC	8 cut(s)	173, 420, 1281, 2108, 2249, 2266, 3006, 3132
PleI	GAGTC	3 cut(s)	206, 1457, 1779
PluTI	GGCGCC	1 cut(s)	1154
PmaCI	CACGTG	1 cut(s)	1423
PmlI	CACGTG	1 cut(s)	1423
PpsI	GAGTC	3 cut(s)	206, 1457, 1779
Ppu21I	YACGTR	1 cut(s)	1423
Psp124BI	GAGCTC	2 cut(s)	966, 1301
PspCI	CACGTG	1 cut(s)	1423
PspEI	GGTNACC	1 cut(s)	2744
PspFI	CCCAGC	1 cut(s)	3007
PspOMI	GGGCCC	1 cut(s)	162
PspPI	GGNCC	7 cut(s)	136, 162, 163, 947, 1574, 3163, 3275
PspXI	VCTCGAGB	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	1284
PstNI	CAGNNNCTG	1 cut(s)	1288
PsuI	RGATCY	8 cut(s)	728, 1385, 1438, 1775, 1831, 2135, 2825, 2834
RsaI	GTAC	4 cut(s)	990, 1963, 3305, 3322
RsaNI	GTAC	4 cut(s)	989, 1962, 3304, 3321
RseI	CAYNNNNRTG	5 cut(s)	665, 777, 2754, 2931, 3186
SacI	GAGCTC	2 cut(s)	966, 1301
SalI	GTCGAC	1 cut(s)	154
SatI	GCNGC	8 cut(s)	172, 419, 1280, 2107, 2248, 2265, 3005, 3131
Sau96I	GGNCC	7 cut(s)	136, 162, 163, 947, 1574, 3163, 3275
SchI	GAGTC	3 cut(s)	206, 1458, 1779
SduI	GDGCHC	6 cut(s)	166, 966, 1301, 1428, 2341, 2521
SexAI	ACCWGGT	2 cut(s)	2308, 2727
SfaNI	GCATC	7 cut(s)	1259, 1783, 2118, 2387, 2402, 2757, 3288
SfcI	CTRYAG	2 cut(s)	1280, 2209
SfoI	GGCGCC	1 cut(s)	1152
Sfr274I	CTCGAG	1 cut(s)	113
SfuI	TTCGAA	2 cut(s)	605, 860
SinI	GGWCC	5 cut(s)	136, 947, 1574, 3163, 3275
SlaI	CTCGAG	1 cut(s)	113
SmiMI	CAYNNNNRTG	5 cut(s)	665, 777, 2754, 2931, 3186
SmlI	CTYRAG	5 cut(s)	113, 491, 767, 1867, 1925
SmoI	CTYRAG	5 cut(s)	113, 491, 767, 1867, 1925
SphI	GCATGC	2 cut(s)	3029, 3220
SseBI	AGGCCT	1 cut(s)	3346
SspDI	GGCGCC	1 cut(s)	1150
SspI	AATATT	1 cut(s)	2539
SspMI	CTAG	6 cut(s)	930, 1530, 1974, 2829, 3000, 3400
SstI	GAGCTC	2 cut(s)	966, 1301
StuI	AGGCCT	1 cut(s)	3346
StyI	CCWWGG	5 cut(s)	222, 450, 1154, 1938, 2221
TaiI	ACGT	3 cut(s)	1425, 2531, 3249
TaqI	TCGA	9 cut(s)	114, 155, 215, 321, 605, 860, 1001, 1167, 2085
TatI	WGTACW	2 cut(s)	3303, 3320
TauI	GCSGC	2 cut(s)	2109, 2250
TscAI	CASTG	8 cut(s)	191, 1246, 1366, 1372, 1416, 1576, 1663, 2761
TseI	GCWGC	6 cut(s)	171, 418, 1279, 2264, 3004, 3130
TspDTI	ATGAA	8 cut(s)	444, 660, 1038, 1110, 2169, 2219, 3241, 3368
TspGWI	ACGGA	2 cut(s)	856, 1005
TspRI	CASTG	8 cut(s)	191, 1246, 1366, 1372, 1416, 1576, 1663, 2761
Van91I	CCANNNNNTGG	2 cut(s)	1523, 1835
VpaK11BI	GGWCC	5 cut(s)	136, 947, 1574, 3163, 3275
XapI	RAATTY	9 cut(s)	743, 790, 1132, 1291, 1432, 1893, 2557, 2800, 2809
XbaI	TCTAGA	2 cut(s)	929, 2828
XceI	RCATGY	2 cut(s)	3029, 3220
XhoI	CTCGAG	1 cut(s)	113
XmiI	GTMKAC	2 cut(s)	155, 2144
XmnI	GAANNNNTTC	3 cut(s)	373, 1235, 1652
XspI	CTAG	6 cut(s)	930, 1530, 1974, 2829, 3000, 3400
Zsp2I	ATGCAT	1 cut(s)	1633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.