Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0012825

Physical Location & Seq

Genomic Coordinates Reverse (-)

3432424 .. 3435848

Gene Structure 3425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3312 bp

ATGAGATGCCATCTGCTTTTCAAAACCGCGCTTTTTCTCAAAGCCTTCTGCTTATTGAGTTGCGTTTCTGGGGAAGCGCTGGTTTCCGAGAAGTCGATTTTGCTCGAGATCAAGAGCTCGTTTTCCGACCCGCATGGGGTTCTCTCCGGCTGGATATCCAACAGCTTCGATCACCCCTGCTCCTGGGTCGGGGTCTCCTGCAACGAAAAATCCAGGGTCGTTTCGCTCAGTCTCGGCGGCAGCAGTGGCAAAGGAGGTAATTTTCGAGCTCTCTCTTGCTCTCAGAGTTTGAAATTTCCATTTCCGTTTGATGAGTTCGCTGTTTGGAGGAAAAGTTTAGTTATTAGTGGAAAATTGGGTGGAAAGGTTTCGCCTTGGGTGGGAAAGCTCACTGAGCTTAGAGTTTTATCGCTGCCATTTAATGAACTTGGTGGCGAAATTCCGAAGGAAATTTGGGGGTTGGAGAAGCTTGAAGTGATCGATCTTGAGGGAAATTTGTTGAACGGAAGTTTGCCAACCCGGTTTTTGGGTTTGAGGAGGTTGAGGGTTTTGAACCTTGGGTTTAATAGAATTGGTGGGGAGATTCCTTATTCGCTTTCGAGATGTGTGGATTTGGAGGTGTTGAATTTGGTAGGCAATGAAGTGAGTGGAACCATTCCTGGGTTTGTTGGTAGTTTTGCAAAGTTGCAGGGACTTTATTTGGCTCAAAATAGGTTAAATGGGTCTATACCAGCCACATTTGGAAGCTTTTGCCGAAATCTTGAACATCTTGATGTGTCGGGGAATTTCCTTGTTGGGAAGATTCCTGGTAGTTTGGGGAATTGTCGGAGTTTACGGACTCTTTTGTTGTTTTCAAATATATTGGATGGTGGCATTCCTCTAGAACTTGGTTGGATTCGAATGCTTGAAGTTCTAGATGTTTCAAGAAATAGCCTTAGCGGGCCAATCCCTGCTGAGCTTGGACAATGTGTCAATTTATCTGTTCTTGTCCTGTCGAATCTTTTTAATCCATTGACAACCAATCAGAATACAAAAGGAGATACATCAATTGATTTATCTAGTGGTTTGGACGATGATTACAATTATTACGAAGGCTCCGTTCCAGAGGAAATTACAACCCTTCCAAATTTGAAAATAGTTTGGGCTCCAAGGGCAACCCTTGAGGGAAAGCTTCCGAGCAATTGGGGTGGTTGTGAGAACTTGGAAATGTTGAACTTAGCTCAGAACCTTTTCAGCGGAGAAGTCACTGGAGTATTTGAAAGATGCAAGAAGCTGCATTATCTAAATTTGGGATCAAATAAGCTGAGTGGGAATATTGATGAGAAGTTTCCAGTTCCATGTATGACTGTTTTCAATGTCAGTGGAAACTTCATGTCTGGACCTGTGCCCGAGTTTCTGTACAGAGCGTGCCCCCAGGTGCTCCCAAATTCAGATCGTGTTCGAGTCAACAATCTATCATTTCCGTATCAAGTGCTCTTTACTTGCCAAACTCAGCTTGATAGCCATTTGCCTAGTTTCACTATGGTTCATGATTTTAGTGGTAACAACTTCACTGGTCCAATCCAACACCTCCCTCTTGCAACCGAGAGATTGCAGAAGCAGACTGTTTATGCATTTCTTGCTGGTGGCAACAAGCTTACTGGATCATTTCCTGAAAGCTTACTAGGAAAATGTGATGGATTAGATGGAATGATTATTGATGTCAGCGACAATAAGTTGTCAGGTCAAATTCCTTTTGGGATTGGTGTGATGTGCAGATCTCTTAGATTCATGGATGCCTCTGGCAATGTTTTATATGGGTCAATACCTTCAGATATTGGGGGTTTGGAATCTCTTGTCTTTCTTGACTTGAGCAGGAACCAGCTACAAGGTCAAATTCCCGCCAGTATCAGTCAGTTGAAGTATCTCAAGTATGTGGCCCTGGCTAACAACAACCTCACTGGTGCAATTCCTGCTAGCTTTGGGTGGTTGCACTCCCTTGAGGTGCTAAAACTGTCTTCTAATTCTCTTTCTGGTGATATTCCTCAAGGTCTTGTGAACTTGAAAAATTTAACTGTTTTTTTGCTCGACAACAATAAACTCTCTGGGCACATCCCTTCAGGCTTGACTAATCTGAAATCCCTATCTACATTCAATGCCTCCTTCAATAACCTGTCTGGTTCATTTCCATTGAACAATAGTGCAATGAACTGCAGCAGTGTCCTTGGGAATCCTTTCATTATTCCATGCCATGTTCCGCTAACTGCTCCATCTTCAGATCAGCCAGATAGGAGTGGGAGTTCACAACATAACCCTGATTCTACATCAGAAACTACTGGTGGTGATGATAATAGTGGATTAGGCTCAGTCGAGATCGCATCCATAGCATCTGCATCAGCTGTTGTTTTGGTTCTGCTCTCTCTCGTTATCCTTTTCTTTTATACGAGAAAATGGATACCAGATTCCAGGGTTCAGGGTTTTGAATATAAAGAAATGACTCTGTTTACAAACATTGGGGCTCCCTTGACATTTGAGATTATTGTTCAAGCAACAGGGAATTTTAATGGCAGCCACCACATTGGAAGCGGAGGATTTGGGGCCACTTACAAAGCCGAAATTGCTCCAGGAATCACTGTAGCTGTGAAAAGGCTAGCTGTTGGAAGGTTTCATGGTGTTCAACAGTTTCATGCTGAGATTAAAACCCTTGGCAGGATCGATCGGAGGCCTTTTAATTGGCAAATTCTCCACAAGATTGCTTTGCATATAGCCCATGCACTTGCTTATCTGCATGGCGAGTGTATTCCGCGTGTCCTTCACCGTGATGTCAAGCCAAGTAACATACTGTTGGATAATGAGTTCAATGCTTATTTGTCTGACTTTGGATTATCTAGGCTTTTGGGAACTTCAGAAACACACGTAACAACTGGTGTGGCAGGGACTTTTGGGTACGTAGCACCAGAGTATGCTATGACTTGCCATGTGTCTGAAAAGTCTGATGTTTACAGTTACGGTGTTATGCTGCTTGAATTGATGTCGCACAAAGAAGCATTGGACCCTTCGTTTTCGTCGCATGGCCATGGTTTCAACATTGTCTCTTGGGTGGACATGCTGTTAGAACAGGGTCGGGATGAGGAGGTCTTCATAGAAGGGCTATGGGATGCAGGACCCCAGAATGATCTAGTCGAGATGTTGAATCTGGCCGTCTCGTGCACGGTCAAGACCCTCACCTTTAGGCCAACAATGAAGCAAGTCGTCCAAAGATTAAAGCGGATCCAACCTGTTTCAAGGAAGCCGGATAATGAGCAAAGTATAGAGCTATCGATCATAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009698 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009808 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009908 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010035 GO:0010073 GO:0010152 GO:0010154 GO:0016020 GO:0016043 GO:0019748 GO:0021700 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0042221 GO:0043933 GO:0044085 GO:0044237 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048508 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051260 GO:0051704 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0099402 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

1104

Amino Acids

120.14

Weight (kDa)

6.25

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69270
fragaria_vesca	FvH4_4g29970
malus_domestica	MD13G1062000.v1.1 MD16G1060500.v1.1
prunus_persica	Prupe.1G287800_v2.0.a1
pyrus_communis	pycom13g05450 pycom16g05270
rosa_chinensis	RchiOBHm_Chr4g0438241
rosa_laevigata	RLG00000006378
rosa_multiflora	Rmu_sc0002682.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379330
rosa_rugosa	Rorug04G0308300
rosa_samantha	Rh4AG359300 Rh4BG370100 Rh4CG384300 Rh4DG365200
rosa_wichuraiana	Rw0G006390 Rw0G016330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	29, 2785
AclWI	GGATC	5 cut(s)	1300, 1651, 2699, 3244, 3257
AcoI	YGGCCR	2 cut(s)	3052, 3177
AcuI	CTGAAG	4 cut(s)	1794, 2082, 2238, 2868
AfaI	GTAC	2 cut(s)	1400, 2927
AfeI	AGCGCT	1 cut(s)	78
AfiI	CCNNNNNNNGG	7 cut(s)	136, 183, 189, 380, 526, 660, 2688
AflIII	ACRYGT	1 cut(s)	2893
AhdI	GACNNNNNGTC	1 cut(s)	968
AjnI	CCWGG	8 cut(s)	182, 212, 658, 805, 1413, 1920, 2444, 2602
AloI	GAACNNNNNNTCC	4 cut(s)	2263, 2295, 2819, 2851
Alw21I	GWGCWC	5 cut(s)	119, 271, 1422, 1476, 3191
Alw26I	GTCTC	4 cut(s)	199, 236, 3076, 3187
Alw44I	GTGCAC	1 cut(s)	3187
AlwI	GGATC	5 cut(s)	1300, 1651, 2699, 3244, 3257
Ama87I	CYCGRG	2 cut(s)	104, 1388
Aor51HI	AGCGCT	1 cut(s)	78
AoxI	GGCC	7 cut(s)	941, 1917, 2577, 2702, 3052, 3177, 3212
ApaLI	GTGCAC	1 cut(s)	3187
ApeKI	GCWGC	6 cut(s)	240, 412, 1273, 2193, 2547, 2998
Asp700I	GAANNNNTTC	3 cut(s)	367, 1229, 2213
AspLEI	GCGC	2 cut(s)	31, 79
AspS9I	GGNCC	7 cut(s)	941, 1379, 1556, 1918, 2577, 3031, 3143
AsuC2I	CCSGG	1 cut(s)	520
AsuHPI	GGTGA	5 cut(s)	164, 2027, 2333, 2786, 3196
AsuII	TTCGAA	1 cut(s)	898
AsuNHI	GCTAGC	2 cut(s)	1955, 2629
AvaI	CYCGRG	2 cut(s)	104, 1388
AvaII	GGWCC	4 cut(s)	1379, 1556, 3031, 3143
BaeGI	GKGCMC	4 cut(s)	1389, 1412, 2091, 3191
BalI	TGGCCA	1 cut(s)	3054
BamHI	GGATCC	1 cut(s)	3249
BanII	GRGCYC	4 cut(s)	119, 271, 1147, 2500
BauI	CACGAG	1 cut(s)	3184
BbsI	GAAGAC	2 cut(s)	1989, 3109
Bbv12I	GWGCWC	5 cut(s)	119, 271, 1422, 1476, 3191
BbvI	GCAGC	6 cut(s)	252, 399, 1260, 2205, 2559, 2985
BccI	CCATC	5 cut(s)	18, 860, 1670, 1679, 2257
BceAI	ACGGC	1 cut(s)	3164
BciT130I	CCWGG	8 cut(s)	184, 214, 660, 807, 1415, 1922, 2446, 2604
BciVI	GTATCC	1 cut(s)	2427
BcnI	CCSGG	1 cut(s)	520
BcoDI	GTCTC	4 cut(s)	199, 236, 3076, 3187
BfmI	CTRYAG	2 cut(s)	2191, 2613
BfoI	RGCGCY	1 cut(s)	80
BfuI	GTATCC	1 cut(s)	2427
BglII	AGATCT	1 cut(s)	1757
BisI	GCNGC	7 cut(s)	238, 241, 413, 1274, 2194, 2548, 2999
BlpI	GCTNAGC	1 cut(s)	954
BlsI	GCNGC	7 cut(s)	239, 242, 414, 1275, 2195, 2549, 3000
Bme1390I	CCNGG	9 cut(s)	184, 214, 520, 660, 807, 1415, 1922, 2446, 2604
Bme18I	GGWCC	4 cut(s)	1379, 1556, 3031, 3143
BmeRI	GACNNNNNGTC	1 cut(s)	968
BmeT110I	CYCGRG	2 cut(s)	104, 1388
BmgT120I	GGNCC	7 cut(s)	941, 1379, 1556, 1918, 2577, 3031, 3143
BmiI	GGNNCC	9 cut(s)	652, 1096, 1146, 1859, 2499, 2578, 3033, 3145, 3251
BmrFI	CCNGG	9 cut(s)	184, 214, 520, 660, 807, 1415, 1922, 2446, 2604
BmsI	GCATC	6 cut(s)	1253, 1765, 2366, 2375, 2381, 3127
BmtI	GCTAGC	2 cut(s)	1959, 2633
BpiI	GAAGAC	2 cut(s)	1989, 3109
BpmI	CTGGAG	2 cut(s)	1269, 2586
Bpu10I	CCTNAGC	1 cut(s)	935
Bpu1102I	GCTNAGC	1 cut(s)	954
Bpu14I	TTCGAA	1 cut(s)	898
BpuEI	CTTGAG	6 cut(s)	506, 1181, 1870, 1892, 2000, 2010
BpuMI	CCSGG	1 cut(s)	520
Bsa29I	ATCGAT	3 cut(s)	480, 2694, 3299
BsaAI	YACGTR	2 cut(s)	2896, 2929
BsaI	GGTCTC	1 cut(s)	199
BsaXI	ACNNNNNCTCC	8 cut(s)	164, 194, 319, 349, 1079, 1109, 2263, 2293
Bsc4I	CCNNNNNNNGG	7 cut(s)	136, 183, 189, 380, 526, 660, 2688
Bse1I	ACTGG	8 cut(s)	1252, 1331, 1558, 1645, 1884, 1945, 2320, 2908
Bse3DI	GCAATG	3 cut(s)	643, 1792, 2190
BseBI	CCWGG	8 cut(s)	184, 214, 660, 807, 1415, 1922, 2446, 2604
BseCI	ATCGAT	3 cut(s)	480, 2694, 3299
BseGI	GGATG	6 cut(s)	871, 1780, 2091, 2357, 3112, 3142
BseLI	CCNNNNNNNGG	7 cut(s)	136, 183, 189, 380, 526, 660, 2688
BseMI	GCAATG	3 cut(s)	643, 1792, 2190
BseMII	CTCAG	9 cut(s)	241, 296, 384, 945, 1235, 1295, 1505, 2358, 2661
BseNI	ACTGG	8 cut(s)	1252, 1331, 1558, 1645, 1884, 1945, 2320, 2908
BseRI	GAGGAG	2 cut(s)	550, 3125
BseSI	GKGCMC	4 cut(s)	1389, 1412, 2091, 3191
BseXI	GCAGC	6 cut(s)	252, 399, 1260, 2205, 2559, 2985
BsgI	GTGCAG	1 cut(s)	1774
Bsh1236I	CGCG	2 cut(s)	29, 2785
Bsh1285I	CGRYCG	1 cut(s)	2698
BshFI	GGCC	7 cut(s)	943, 1919, 2579, 2704, 3054, 3179, 3214
BshVI	ATCGAT	3 cut(s)	480, 2694, 3299
BsiEI	CGRYCG	1 cut(s)	2698
BsiHKAI	GWGCWC	5 cut(s)	119, 271, 1422, 1476, 3191
BsiHKCI	CYCGRG	2 cut(s)	104, 1388
BsiSI	CCGG	3 cut(s)	147, 520, 3272
BslFI	GGGAC	2 cut(s)	705, 2929
BslI	CCNNNNNNNGG	7 cut(s)	136, 183, 189, 380, 526, 660, 2688
BsmAI	GTCTC	4 cut(s)	199, 236, 3076, 3187
BsmBI	CGTCTC	1 cut(s)	3187
BsmFI	GGGAC	2 cut(s)	705, 2929
BsmI	GAATGC	2 cut(s)	873, 906
BsnI	GGCC	7 cut(s)	943, 1919, 2579, 2704, 3054, 3179, 3214
Bso31I	GGTCTC	1 cut(s)	199
BsoBI	CYCGRG	2 cut(s)	104, 1388
Bsp119I	TTCGAA	1 cut(s)	898
Bsp1407I	TGTACA	1 cut(s)	1398
Bsp1720I	GCTNAGC	1 cut(s)	954
Bsp19I	CCATGG	1 cut(s)	3055
BspANI	GGCC	7 cut(s)	943, 1919, 2579, 2704, 3054, 3179, 3214
BspCNI	CTCAG	9 cut(s)	240, 295, 385, 946, 1234, 1296, 1504, 2357, 2662
BspDI	ATCGAT	3 cut(s)	480, 2694, 3299
BspFNI	CGCG	2 cut(s)	29, 2785
BspHI	TCATGA	1 cut(s)	1528
BspLI	GGNNCC	9 cut(s)	652, 1096, 1146, 1859, 2499, 2578, 3033, 3145, 3251
BspMAI	CTGCAG	1 cut(s)	2195
BspOI	GCTAGC	2 cut(s)	1959, 2633
BspPI	GGATC	5 cut(s)	1300, 1651, 2699, 3244, 3257
BspT104I	TTCGAA	1 cut(s)	898
BspTNI	GGTCTC	1 cut(s)	199
BsrDI	GCAATG	3 cut(s)	643, 1792, 2190
BsrGI	TGTACA	1 cut(s)	1398
BsrI	ACTGG	8 cut(s)	1252, 1331, 1558, 1645, 1884, 1945, 2320, 2908
BssSI	CACGAG	1 cut(s)	3184
BssT1I	CCWWGG	6 cut(s)	374, 556, 1148, 2203, 2683, 3055
Bst2BI	CACGAG	1 cut(s)	3184
Bst2UI	CCWGG	8 cut(s)	184, 214, 660, 807, 1415, 1922, 2446, 2604
BstAPI	GCANNNNNTGC	2 cut(s)	1619, 1952
BstAUI	TGTACA	1 cut(s)	1398
BstBAI	YACGTR	2 cut(s)	2896, 2929
BstBI	TTCGAA	1 cut(s)	898
BstC8I	GCNNGC	4 cut(s)	941, 1408, 1957, 2631
BstDSI	CCRYGG	1 cut(s)	3055
BstF5I	GGATG	6 cut(s)	871, 1780, 2091, 2357, 3112, 3142
BstFNI	CGCG	2 cut(s)	29, 2785
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	31, 79
BstMAI	GTCTC	4 cut(s)	199, 236, 3076, 3187
BstMCI	CGRYCG	1 cut(s)	2698
BstMWI	GCNNNNNNNGC	7 cut(s)	246, 394, 1151, 1619, 1952, 2363, 2597
BstNI	CCWGG	8 cut(s)	184, 214, 660, 807, 1415, 1922, 2446, 2604
BstNSI	RCATGY	1 cut(s)	3088
BstSCI	CCNGG	9 cut(s)	182, 212, 518, 658, 805, 1413, 1920, 2444, 2602
BstSFI	CTRYAG	2 cut(s)	2191, 2613
BstSLI	GKGCMC	4 cut(s)	1389, 1412, 2091, 3191
BstSNI	TACGTA	1 cut(s)	2929
BstUI	CGCG	2 cut(s)	29, 2785
BstV1I	GCAGC	6 cut(s)	252, 399, 1260, 2205, 2559, 2985
BstV2I	GAAGAC	2 cut(s)	1989, 3109
BstX2I	RGATCY	2 cut(s)	1757, 3249
BstXI	CCANNNNNNTGG	1 cut(s)	2558
BstYI	RGATCY	2 cut(s)	1757, 3249
Bsu15I	ATCGAT	3 cut(s)	480, 2694, 3299
BsuI	GTATCC	1 cut(s)	2427
BsuRI	GGCC	7 cut(s)	943, 1919, 2579, 2704, 3054, 3179, 3214
BsuTUI	ATCGAT	3 cut(s)	480, 2694, 3299
BtgI	CCRYGG	1 cut(s)	3055
BtsCI	GGATG	6 cut(s)	871, 1780, 2091, 2357, 3112, 3142
BtsI	GCAGTG	2 cut(s)	250, 2203
BtsIMutI	CAGTG	8 cut(s)	250, 390, 1245, 1366, 1551, 1938, 2203, 2610
Cac8I	GCNNGC	4 cut(s)	941, 1408, 1957, 2631
CciI	TCATGA	1 cut(s)	1528
CfoI	GCGC	2 cut(s)	31, 79
Cfr13I	GGNCC	7 cut(s)	941, 1379, 1556, 1918, 2577, 3031, 3143
ClaI	ATCGAT	3 cut(s)	480, 2694, 3299
Csp6I	GTAC	2 cut(s)	1399, 2926
CspCI	CAANNNNNGTGG	6 cut(s)	1168, 1203, 1342, 1377, 2889, 2924
CviQI	GTAC	2 cut(s)	1399, 2926
DriI	GACNNNNNGTC	1 cut(s)	968
EaeI	YGGCCR	2 cut(s)	3052, 3177
Eam1105I	GACNNNNNGTC	1 cut(s)	968
Ecl136II	GAGCTC	2 cut(s)	117, 269
Eco105I	TACGTA	1 cut(s)	2929
Eco130I	CCWWGG	6 cut(s)	374, 556, 1148, 2203, 2683, 3055
Eco147I	AGGCCT	1 cut(s)	2704
Eco24I	GRGCYC	4 cut(s)	119, 271, 1147, 2500
Eco31I	GGTCTC	1 cut(s)	199
Eco32I	GATATC	1 cut(s)	156
Eco47I	GGWCC	4 cut(s)	1379, 1556, 3031, 3143
Eco47III	AGCGCT	1 cut(s)	78
Eco53kI	GAGCTC	2 cut(s)	117, 269
Eco57I	CTGAAG	4 cut(s)	1794, 2082, 2238, 2868
Eco88I	CYCGRG	2 cut(s)	104, 1388
EcoICRI	GAGCTC	2 cut(s)	117, 269
EcoO109I	RGGNCCY	1 cut(s)	3143
EcoRII	CCWGG	8 cut(s)	182, 212, 658, 805, 1413, 1920, 2444, 2602
EcoRV	GATATC	1 cut(s)	156
EcoT14I	CCWWGG	6 cut(s)	374, 556, 1148, 2203, 2683, 3055
EcoT22I	ATGCAT	1 cut(s)	1615
EcoT38I	GRGCYC	4 cut(s)	119, 271, 1147, 2500
ErhI	CCWWGG	6 cut(s)	374, 556, 1148, 2203, 2683, 3055
Esp3I	CGTCTC	1 cut(s)	3187
FaqI	GGGAC	2 cut(s)	705, 2929
FauI	CCCGC	3 cut(s)	138, 932, 1888
Fnu4HI	GCNGC	7 cut(s)	238, 241, 413, 1274, 2194, 2548, 2999
FokI	GGATG	6 cut(s)	878, 1787, 2078, 2344, 3119, 3149
FriOI	GRGCYC	4 cut(s)	119, 271, 1147, 2500
Fsp4HI	GCNGC	7 cut(s)	238, 241, 413, 1274, 2194, 2548, 2999
GlaI	GCGC	2 cut(s)	30, 78
GluI	GCNGC	7 cut(s)	238, 241, 413, 1274, 2194, 2548, 2999
GsuI	CTGGAG	2 cut(s)	1269, 2586
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	7 cut(s)	943, 1919, 2579, 2704, 3054, 3179, 3214
HapII	CCGG	3 cut(s)	147, 520, 3272
HhaI	GCGC	2 cut(s)	31, 79
Hin6I	GCGC	2 cut(s)	29, 77
HinP1I	GCGC	2 cut(s)	29, 77
HincII	GTYRAC	1 cut(s)	1447
HindII	GTYRAC	1 cut(s)	1447
HindIII	AAGCTT	5 cut(s)	467, 745, 1169, 1634, 1657
HpaII	CCGG	3 cut(s)	147, 520, 3272
HphI	GGTGA	5 cut(s)	164, 2027, 2333, 2786, 3196
Hpy166II	GTNNAC	8 cut(s)	833, 1447, 2038, 2282, 2484, 2980, 3082, 3189
Hpy8I	GTNNAC	8 cut(s)	833, 1447, 2038, 2282, 2484, 2980, 3082, 3189
Hpy99I	CGWCG	1 cut(s)	3049
HpyCH4IV	ACGT	2 cut(s)	2895, 2928
HpyF10VI	GCNNNNNNNGC	7 cut(s)	246, 394, 1151, 1619, 1952, 2363, 2597
HpySE526I	ACGT	2 cut(s)	2895, 2928
HspAI	GCGC	2 cut(s)	29, 77
LmnI	GCTCC	7 cut(s)	185, 1100, 1150, 1425, 2251, 2503, 2605
Lsp1109I	GCAGC	6 cut(s)	252, 399, 1260, 2205, 2559, 2985
LweI	GCATC	6 cut(s)	1253, 1765, 2366, 2375, 2381, 3127
MaeII	ACGT	2 cut(s)	2895, 2928
MaeIII	GTNAC	5 cut(s)	1243, 1541, 2813, 2896, 2984
MboII	GAAGA	4 cut(s)	811, 1989, 2244, 3109
MfeI	CAATTG	2 cut(s)	1047, 1180
MflI	RGATCY	2 cut(s)	1757, 3249
MlsI	TGGCCA	1 cut(s)	3054
MluNI	TGGCCA	1 cut(s)	3054
MlyI	GAGTC	3 cut(s)	832, 1452, 2470
MmeI	TCCRAC	9 cut(s)	150, 183, 441, 806, 872, 1588, 2617, 2805, 3277
Mox20I	TGGCCA	1 cut(s)	3054
Mph1103I	ATGCAT	1 cut(s)	1615
MroXI	GAANNNNTTC	3 cut(s)	367, 1229, 2213
MscI	TGGCCA	1 cut(s)	3054
MseI	TTAA	9 cut(s)	420, 564, 716, 1005, 2051, 2541, 2676, 2709, 3242
MslI	CAYNNNNRTG	3 cut(s)	771, 2799, 3054
Msp20I	TGGCCA	1 cut(s)	3054
MspA1I	CMGCKG	2 cut(s)	1236, 2378
MspI	CCGG	3 cut(s)	147, 520, 3272
MspR9I	CCNGG	9 cut(s)	184, 214, 520, 660, 807, 1415, 1922, 2446, 2604
MunI	CAATTG	2 cut(s)	1047, 1180
Mva1269I	GAATGC	2 cut(s)	873, 906
MvaI	CCWGG	8 cut(s)	184, 214, 660, 807, 1415, 1922, 2446, 2604
MvnI	CGCG	2 cut(s)	29, 2785
MwoI	GCNNNNNNNGC	7 cut(s)	246, 394, 1151, 1619, 1952, 2363, 2597
NciI	CCSGG	1 cut(s)	520
NcoI	CCATGG	1 cut(s)	3055
NheI	GCTAGC	2 cut(s)	1955, 2629
NlaIV	GGNNCC	9 cut(s)	652, 1096, 1146, 1859, 2499, 2578, 3033, 3145, 3251
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	1243
NsiI	ATGCAT	1 cut(s)	1615
NspI	RCATGY	1 cut(s)	3088
NspV	TTCGAA	1 cut(s)	898
PaeR7I	CTCGAG	1 cut(s)	104
PagI	TCATGA	1 cut(s)	1528
PceI	AGGCCT	1 cut(s)	2704
PcsI	WCGNNNNNNNCGW	1 cut(s)	1095
PctI	GAATGC	2 cut(s)	873, 906
PdmI	GAANNNNTTC	3 cut(s)	367, 1229, 2213
PfoI	TCCNGGA	1 cut(s)	2602
PkrI	GCNGC	7 cut(s)	239, 242, 414, 1275, 2195, 2549, 3000
Ple19I	CGATCG	1 cut(s)	2698
PleI	GAGTC	3 cut(s)	832, 1451, 2470
PpsI	GAGTC	3 cut(s)	832, 1451, 2470
Ppu21I	YACGTR	2 cut(s)	2896, 2929
PpuMI	RGGWCCY	1 cut(s)	3143
Psp124BI	GAGCTC	2 cut(s)	119, 271
Psp5II	RGGWCCY	1 cut(s)	3143
Psp6I	CCWGG	8 cut(s)	182, 212, 658, 805, 1413, 1920, 2444, 2602
PspGI	CCWGG	8 cut(s)	182, 212, 658, 805, 1413, 1920, 2444, 2602
PspN4I	GGNNCC	9 cut(s)	652, 1096, 1146, 1859, 2499, 2578, 3033, 3145, 3251
PspPI	GGNCC	7 cut(s)	941, 1379, 1556, 1918, 2577, 3031, 3143
PspPPI	RGGWCCY	1 cut(s)	3143
PstI	CTGCAG	1 cut(s)	2195
PsuI	RGATCY	2 cut(s)	1757, 3249
PvuI	CGATCG	1 cut(s)	2698
PvuII	CAGCTG	1 cut(s)	2378
RsaI	GTAC	2 cut(s)	1400, 2927
RsaNI	GTAC	2 cut(s)	1399, 2926
RseI	CAYNNNNRTG	3 cut(s)	771, 2799, 3054
SacI	GAGCTC	2 cut(s)	119, 271
SaqAI	TTAA	9 cut(s)	420, 564, 716, 1005, 2051, 2541, 2676, 2709, 3242
SatI	GCNGC	7 cut(s)	238, 241, 413, 1274, 2194, 2548, 2999
Sau96I	GGNCC	7 cut(s)	941, 1379, 1556, 1918, 2577, 3031, 3143
SchI	GAGTC	3 cut(s)	832, 1452, 2470
ScrFI	CCNGG	9 cut(s)	184, 214, 520, 660, 807, 1415, 1922, 2446, 2604
SfaNI	GCATC	6 cut(s)	1253, 1765, 2366, 2375, 2381, 3127
SfcI	CTRYAG	2 cut(s)	2191, 2613
Sfr274I	CTCGAG	1 cut(s)	104
SfuI	TTCGAA	1 cut(s)	898
SinI	GGWCC	4 cut(s)	1379, 1556, 3031, 3143
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	3 cut(s)	771, 2799, 3054
SmlI	CTYRAG	7 cut(s)	104, 485, 1160, 1849, 1907, 1979, 2025
SmoI	CTYRAG	7 cut(s)	104, 485, 1160, 1849, 1907, 1979, 2025
SnaBI	TACGTA	1 cut(s)	2929
SseBI	AGGCCT	1 cut(s)	2704
SspI	AATATT	1 cut(s)	1315
SstI	GAGCTC	2 cut(s)	119, 271
StuI	AGGCCT	1 cut(s)	2704
StyD4I	CCNGG	9 cut(s)	182, 212, 518, 658, 805, 1413, 1920, 2444, 2602
StyI	CCWWGG	6 cut(s)	374, 556, 1148, 2203, 2683, 3055
TaiI	ACGT	2 cut(s)	2898, 2931
TatI	WGTACW	1 cut(s)	1398
TauI	GCSGC	1 cut(s)	240
Tru1I	TTAA	9 cut(s)	420, 564, 716, 1005, 2051, 2541, 2676, 2709, 3242
Tru9I	TTAA	9 cut(s)	420, 564, 716, 1005, 2051, 2541, 2676, 2709, 3242
TscAI	CASTG	8 cut(s)	250, 397, 1252, 1366, 1558, 1945, 2203, 2617
TseFI	GTSAC	1 cut(s)	1243
TseI	GCWGC	6 cut(s)	240, 412, 1273, 2193, 2547, 2998
Tsp45I	GTSAC	1 cut(s)	1243
TspGWI	ACGGA	5 cut(s)	294, 519, 850, 1087, 1452
TspRI	CASTG	8 cut(s)	250, 397, 1252, 1366, 1558, 1945, 2203, 2617
VneI	GTGCAC	1 cut(s)	3187
VpaK11BI	GGWCC	4 cut(s)	1379, 1556, 3031, 3143
XbaI	TCTAGA	2 cut(s)	880, 913
XceI	RCATGY	1 cut(s)	3088
XhoI	CTCGAG	1 cut(s)	104
XmnI	GAANNNNTTC	3 cut(s)	367, 1229, 2213
Zsp2I	ATGCAT	1 cut(s)	1615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.