AT1G69523

ubiE/COQ5 methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009895
Physical Location & Seq
Forward (+)
26129551 .. 26131292
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69523.1

Sequence Viewer

Length: 903 bp
ATGGAGATTCTCCACTTCTCACCTTCTTCATCAATCTCGACGATCATACATAGACCTCGAAGAAAGATTATGGCTTTGAGAGATTCCATCAAAACCCAGATGAATCTCATTACGACAGAGTCTGTTTCATCTTTCAGGTTCTGTCCTTGTGGAAGAAGACATTTCATAGGAGCTGCTATGACTTCAATGCCATTTCTTCCAATCTCTCCCTCTCACGCTTCTACCTCAACGGAAGATTTGAAAAGATTACGTCCTCCAAAGCCAGATTGGTATGAAGAATTCTTTGCTTGGTCTATGAATTCAGAGGTGGAATCGTACGAGAAAGAGGTTTCAGATTACAAGATGAAACTCTTTGATAACTTAGTTGGGAAAGCAGAAAAAGTTTTGGAGATTGGCATTGGAACAGGTCCCAACTTCAAGTACTACACAGACATTCCAAACGTTTCTGTTATTGGTATTGATCCAAATGCTAAAATGGAAAGTTATGCGCGTAAATCCGCTACAGAAGCAGGCTTGAAACCTGAAGAATTCACATTCGTTCATGCGCTTGGAGAGTCTATACCGTTAGAAGATGCATCGGTTGATGCAGTCGTGGGGACTCTGGTGCTTTGTTCTGTCACAGATGTCACTCAGACGCTCAAAGAGATAAAACGGATACTAAGACCGGGAGGGATATACATTTTCATTGAACATGTTGCAGCCGAAGATGGTACATTTTTGAGGTTGGTGCAGACAGTTTTGGACCCATTGCAACAAGTTGTTGCCGATGGATGTCACTTGACAAGGCACACCGGAGAGTCAATTTTAGAAGCTAGGTTCAATGGTGGTGCAGATGTTAAAAAGACATCTCTTTCTAGGCTTGCTTACATAAGCTCTCATGTCTATGGAGTTGCTTATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

300

Amino Acids

33.4

Weight (kDa)

6.32

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_23 PF13489 108 - 236 7.2e-11 Methyltransferase domain
Methyltransf_31 PF13847 124 - 234 1.8e-12 Methyltransferase domain
Ubie_methyltran PF01209 124 - 233 1.6e-11 ubiE/COQ5 methyltransferase family
Methyltransf_25 PF13649 128 - 224 5e-17 Methyltransferase domain
Methyltransf_11 PF08241 129 - 228 3e-21 Methyltransferase domain
Methyltransf_12 PF08242 129 - 225 8.9e-11 Methyltransferase domain
Methyltransf_8 PF05148 186 - 230 1.8e-06 Hypothetical methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69520 AT1G69520 AT1G69523 AT1G69526 AT1G69526 AT1G69526
fragaria_vesca FvH4_4g31120 FvH4_4g31120
malus_domestica MD16G1070300.v1.1
prunus_persica Prupe.1G276900_v2.0.a1 Prupe.1G276900_v2.0.a1
pyrus_communis pycom16g06120
rosa_chinensis RchiOBHm_Chr4g0439511
rosa_laevigata RLG00000006262
rosa_multiflora Rmu_co8194290.1_g000001
rosa_roxburghii Rroxscaffold_5G00380430
rosa_samantha Rh4AG370300 Rh4BG382200 Rh4CG396800 Rh4DG376900
rosa_wichuraiana Rw4G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 897
AccII CGCG 1 cut(s) 490
AciI CCGC 1 cut(s) 498
AclI AACGTT 1 cut(s) 441
AclWI GGATC 1 cut(s) 455
AcsI RAATTY 3 cut(s) 278, 298, 527
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 3 cut(s) 317, 422, 712
AflIII ACRYGT 1 cut(s) 691
AgsI TTSAA 6 cut(s) 186, 241, 418, 517, 689, 820
AluBI AGCT 3 cut(s) 173, 812, 873
AluI AGCT 3 cut(s) 173, 812, 873
AlwI GGATC 1 cut(s) 455
AlwNI CAGNNNCTG 2 cut(s) 122, 141
ApeKI GCWGC 2 cut(s) 173, 698
ApoI RAATTY 3 cut(s) 278, 298, 527
AspLEI GCGC 2 cut(s) 490, 547
AspS9I GGNCC 2 cut(s) 407, 742
AsuC2I CCSGG 1 cut(s) 666
AsuHPI GGTGA 1 cut(s) 12
AvaII GGWCC 2 cut(s) 407, 742
BbsI GAAGAC 1 cut(s) 163
BbvI GCAGC 2 cut(s) 160, 710
BccI CCATC 3 cut(s) 95, 701, 761
BciVI GTATCC 1 cut(s) 648
BcnI CCSGG 1 cut(s) 666
BfaI CTAG 2 cut(s) 813, 855
BfmI CTRYAG 1 cut(s) 501
BfuI GTATCC 1 cut(s) 648
BisI GCNGC 2 cut(s) 174, 699
BlsI GCNGC 2 cut(s) 175, 700
BmcAI AGTACT 1 cut(s) 422
Bme1390I CCNGG 1 cut(s) 666
Bme18I GGWCC 2 cut(s) 407, 742
BmgT120I GGNCC 2 cut(s) 407, 742
BmiI GGNNCC 2 cut(s) 409, 744
BmrFI CCNGG 1 cut(s) 666
BmsI GCATC 3 cut(s) 562, 574, 584
BpiI GAAGAC 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 666
BsaWI WCCGGW 1 cut(s) 791
Bse3DI GCAATG 1 cut(s) 746
BseGI GGATG 1 cut(s) 776
BseMI GCAATG 1 cut(s) 746
BseMII CTCAG 1 cut(s) 644
BseXI GCAGC 2 cut(s) 160, 710
BsgI GTGCAG 2 cut(s) 749, 849
Bsh1236I CGCG 1 cut(s) 490
BsiSI CCGG 2 cut(s) 665, 792
BsiWI CGTACG 1 cut(s) 315
BslFI GGGAC 2 cut(s) 393, 610
BsmFI GGGAC 2 cut(s) 393, 610
Bsp143I GATC 2 cut(s) 42, 460
BspACI CCGC 1 cut(s) 498
BspCNI CTCAG 1 cut(s) 643
BspFNI CGCG 1 cut(s) 490
BspLI GGNNCC 2 cut(s) 409, 744
BspPI GGATC 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 746
BssMI GATC 2 cut(s) 42, 460
Bst4CI ACNGT 2 cut(s) 564, 736
BstC8I GCNNGC 2 cut(s) 511, 861
BstDEI CTNAG 3 cut(s) 361, 630, 659
BstF5I GGATG 1 cut(s) 776
BstFNI CGCG 1 cut(s) 490
BstHHI GCGC 2 cut(s) 490, 547
BstKTI GATC 2 cut(s) 45, 463
BstMBI GATC 2 cut(s) 42, 460
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNSI RCATGY 1 cut(s) 695
BstSCI CCNGG 1 cut(s) 664
BstSFI CTRYAG 1 cut(s) 501
BstUI CGCG 1 cut(s) 490
BstV1I GCAGC 2 cut(s) 160, 710
BstV2I GAAGAC 1 cut(s) 163
BsuI GTATCC 1 cut(s) 648
BtsCI GGATG 1 cut(s) 776
Cac8I GCNNGC 2 cut(s) 511, 861
CaiI CAGNNNCTG 2 cut(s) 122, 141
CfoI GCGC 2 cut(s) 490, 547
Cfr13I GGNCC 2 cut(s) 407, 742
CseI GACGC 1 cut(s) 643
Csp6I GTAC 3 cut(s) 316, 421, 711
CviAII CATG 3 cut(s) 542, 692, 878
CviJI RGCY 8 cut(s) 74, 173, 262, 513, 701, 812, 859, 873
CviKI_1 RGCY 8 cut(s) 74, 173, 262, 513, 701, 812, 859, 873
CviQI GTAC 3 cut(s) 316, 421, 711
DdeI CTNAG 3 cut(s) 361, 630, 659
DpnI GATC 2 cut(s) 44, 462
DpnII GATC 2 cut(s) 42, 460
Eco47I GGWCC 2 cut(s) 407, 742
Eco57I CTGAAG 1 cut(s) 543
EcoO109I RGGNCCY 1 cut(s) 407
EcoRI GAATTC 3 cut(s) 278, 298, 527
EcoT22I ATGCAT 1 cut(s) 577
FaeI CATG 3 cut(s) 545, 695, 881
FaqI GGGAC 2 cut(s) 393, 610
FatI CATG 3 cut(s) 541, 691, 877
Fnu4HI GCNGC 2 cut(s) 174, 699
FokI GGATG 1 cut(s) 783
Fsp4HI GCNGC 2 cut(s) 174, 699
FspBI CTAG 2 cut(s) 813, 855
GlaI GCGC 2 cut(s) 489, 546
GluI GCNGC 2 cut(s) 174, 699
HapII CCGG 2 cut(s) 665, 792
HgaI GACGC 1 cut(s) 643
HhaI GCGC 2 cut(s) 490, 547
Hin1II CATG 3 cut(s) 545, 695, 881
Hin6I GCGC 2 cut(s) 488, 545
HinP1I GCGC 2 cut(s) 488, 545
HinfI GANTC 8 cut(s) 7, 83, 103, 119, 311, 554, 598, 797
HpaII CCGG 2 cut(s) 665, 792
HphI GGTGA 1 cut(s) 12
Hpy188I TCNGA 3 cut(s) 304, 334, 633
Hpy188III TCNNGA 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 2 cut(s) 564, 736
HpyCH4IV ACGT 2 cut(s) 250, 441
HpyCH4V TGCA 6 cut(s) 575, 587, 698, 730, 751, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 3 cut(s) 361, 630, 659
HpySE526I ACGT 2 cut(s) 250, 441
Hsp92II CATG 3 cut(s) 545, 695, 881
HspAI GCGC 2 cut(s) 488, 545
Kzo9I GATC 2 cut(s) 42, 460
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 9 cut(s) 110, 121, 276, 390, 495, 534, 587, 678, 805
Lsp1109I GCAGC 2 cut(s) 160, 710
LweI GCATC 3 cut(s) 562, 574, 584
MaeI CTAG 2 cut(s) 813, 855
MaeII ACGT 2 cut(s) 250, 441
MaeIII GTNAC 3 cut(s) 616, 625, 773
MalI GATC 2 cut(s) 44, 462
MboI GATC 2 cut(s) 42, 460
MluCI AATT 5 cut(s) 278, 298, 527, 801, 898
MlyI GAGTC 4 cut(s) 128, 563, 592, 806
MnlI CCTC 8 cut(s) 66, 220, 235, 264, 298, 319, 662, 714
Mph1103I ATGCAT 1 cut(s) 577
MseI TTAA 2 cut(s) 837, 901
MslI CAYNNNNRTG 1 cut(s) 882
MspI CCGG 2 cut(s) 665, 792
MspR9I CCNGG 1 cut(s) 666
MvnI CGCG 1 cut(s) 490
MwoI GCNNNNNNNGC 1 cut(s) 506
NciI CCSGG 1 cut(s) 666
NdeII GATC 2 cut(s) 42, 460
NlaIII CATG 3 cut(s) 545, 695, 881
NlaIV GGNNCC 2 cut(s) 409, 744
NmuCI GTSAC 3 cut(s) 616, 625, 773
NsiI ATGCAT 1 cut(s) 577
NspI RCATGY 1 cut(s) 695
PciI ACATGT 1 cut(s) 691
PfeI GAWTC 4 cut(s) 7, 83, 103, 311
Pfl23II CGTACG 1 cut(s) 315
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 2 cut(s) 175, 700
PleI GAGTC 4 cut(s) 127, 562, 592, 805
PpsI GAGTC 4 cut(s) 127, 562, 592, 805
PpuMI RGGWCCY 1 cut(s) 407
PscI ACATGT 1 cut(s) 691
PsiI TTATAA 1 cut(s) 897
Psp1406I AACGTT 1 cut(s) 441
Psp5II RGGWCCY 1 cut(s) 407
PspLI CGTACG 1 cut(s) 315
PspN4I GGNNCC 2 cut(s) 409, 744
PspPI GGNCC 2 cut(s) 407, 742
PspPPI RGGWCCY 1 cut(s) 407
PstNI CAGNNNCTG 2 cut(s) 122, 141
PsyI GACNNNGTC 1 cut(s) 118
RsaI GTAC 3 cut(s) 317, 422, 712
RsaNI GTAC 3 cut(s) 316, 421, 711
RseI CAYNNNNRTG 1 cut(s) 882
SaqAI TTAA 2 cut(s) 837, 901
SatI GCNGC 2 cut(s) 174, 699
Sau3AI GATC 2 cut(s) 42, 460
Sau96I GGNCC 2 cut(s) 407, 742
ScaI AGTACT 1 cut(s) 422
SchI GAGTC 4 cut(s) 128, 563, 592, 806
ScrFI CCNGG 1 cut(s) 666
SfaNI GCATC 3 cut(s) 562, 574, 584
SfcI CTRYAG 1 cut(s) 501
SinI GGWCC 2 cut(s) 407, 742
SmiMI CAYNNNNRTG 1 cut(s) 882
Sse9I AATT 5 cut(s) 278, 298, 527, 801, 898
SsiI CCGC 1 cut(s) 498
SspMI CTAG 2 cut(s) 813, 855
StyD4I CCNGG 1 cut(s) 664
TaaI ACNGT 2 cut(s) 564, 736
TaiI ACGT 2 cut(s) 253, 444
TaqI TCGA 2 cut(s) 38, 58
TasI AATT 5 cut(s) 278, 298, 527, 801, 898
TatI WGTACW 1 cut(s) 420
TfiI GAWTC 4 cut(s) 7, 83, 103, 311
Tru1I TTAA 2 cut(s) 837, 901
Tru9I TTAA 2 cut(s) 837, 901
TseFI GTSAC 3 cut(s) 616, 625, 773
TseI GCWGC 2 cut(s) 173, 698
Tsp45I GTSAC 3 cut(s) 616, 625, 773
TspDTI ATGAA 9 cut(s) 18, 116, 117, 154, 288, 311, 359, 530, 673
TspGWI ACGGA 2 cut(s) 245, 667
Tth111I GACNNNGTC 1 cut(s) 118
VpaK11BI GGWCC 2 cut(s) 407, 742
XapI RAATTY 3 cut(s) 278, 298, 527
XceI RCATGY 1 cut(s) 695
XcmI CCANNNNNNNNNTGG 1 cut(s) 264
XspI CTAG 2 cut(s) 813, 855
ZrmI AGTACT 1 cut(s) 422
Zsp2I ATGCAT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.