Rw4G031570

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0009895
Physical Location & Seq
Forward (+)
58680684 .. 58682655
1972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G031570.1

Sequence Viewer

Length: 921 bp
ATGATCCTTTACAGTCCTCTCTTCTCATCCGGCGTTACGCCACGTGGCAAAACCACATCTTCTTCTTCTTCTCCGACCCGAGTCAACTCGGACGCTTCACCGGCCGGATCACTCGGGCCGGACTCGTTCTGTCCGAGCGGCTTATGTTCTTGCGGAAGAAGACGCTTCATCGAAGCAGCAGTCACTTCATCTCTATTCCCAATTTGCCCCTCCACCTCCTTCGCTTCCAAGTCGCAGTTCGACGATTATACGGCCACGTTGAGGAAAGTTCACCCTCCTCGACCAGACTGGTATGAAGAGTTATATGCGTCAGTGTTGAACACCGGCATGCAATCTTACGAAGACGAGATTGCGGGTTACAAGTCGGAGCTCTTTGCTAAGTTGAAGGGAAAAGCTGAGCAAGTGTTGGAAATTGGTATAGGGACTGGTCCTAATCTAAGATACTATGGTGCTGATGATGGTGTCCGAGTTTTCGGCGTGGATCCTAATAAAAAGATGGAAAGATATGCTAAGGCTGCGGCAGTGGCTGCTGGTCTGCCCCTTTCGAACTTTGAGTTTATACAAGCAGTTGGGGAGGCTATACCATTAGATGATGCTTCTGTTGATGCAGTTGTTGGAACCCTAGTATTGTGTTCTGTAAAAGATGTCAACAAGACTTTAAAAGAGATTAAGAGAGTGCTGAGACCAGGTGGACTCTACTTGTTTGTGGAGCATGTGGCTGCAAAAGATGGGACAGCCCTCAGATTTATACAGAGTGTTCTTGATCCTTTGCAACAAACCCTTGCCGATGGGTGTCATCTCACCCGGGAAACAGGAACCAATATATCCAGATCCGGCTTCTCAGGCGTCGAGCTTAGCATGACCTCCTTGTCCAGTACCTCAATTATAAACCCTCAAATCTATGGAATAGCTTTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

306

Amino Acids

32.82

Weight (kDa)

6.83

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_23 PF13489 117 - 243 1.4e-12 Methyltransferase domain
Methyltransf_31 PF13847 131 - 245 4.2e-11 Methyltransferase domain
Methyltransf_25 PF13649 135 - 231 3.1e-17 Methyltransferase domain
Methyltransf_11 PF08241 136 - 235 8.4e-22 Methyltransferase domain
Methyltransf_12 PF08242 136 - 232 9.6e-12 Methyltransferase domain
Ubie_methyltran PF01209 151 - 238 5.4e-10 ubiE/COQ5 methyltransferase family
Methyltransf_8 PF05148 193 - 237 5.6e-06 Hypothetical methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69520 AT1G69520 AT1G69523 AT1G69526 AT1G69526 AT1G69526
fragaria_vesca FvH4_4g31120 FvH4_4g31120
malus_domestica MD16G1070300.v1.1
prunus_persica Prupe.1G276900_v2.0.a1 Prupe.1G276900_v2.0.a1
pyrus_communis pycom16g06120
rosa_chinensis RchiOBHm_Chr4g0439511
rosa_laevigata RLG00000006262
rosa_multiflora Rmu_co8194290.1_g000001
rosa_roxburghii Rroxscaffold_5G00380430
rosa_samantha Rh4AG370300 Rh4BG382200 Rh4CG396800 Rh4DG376900
rosa_wichuraiana Rw4G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 887
AasI GACNNNNNNGTC 1 cut(s) 868
AccBSI CCGCTC 1 cut(s) 138
AciI CCGC 4 cut(s) 138, 153, 353, 518
AclWI GGATC 5 cut(s) 115, 476, 489, 758, 825
AcoI YGGCCR 2 cut(s) 102, 252
AcvI CACGTG 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 846
AfaI GTAC 1 cut(s) 877
AfiI CCNNNNNNNGG 1 cut(s) 261
AgsI TTSAA 3 cut(s) 319, 385, 916
AjnI CCWGG 1 cut(s) 685
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 4 cut(s) 370, 395, 853, 911
AluI AGCT 4 cut(s) 370, 395, 853, 911
Alw21I GWGCWC 1 cut(s) 372
Alw26I GTCTC 1 cut(s) 676
AlwI GGATC 5 cut(s) 115, 476, 489, 758, 825
AlwNI CAGNNNCTG 1 cut(s) 527
Ama87I CYCGRG 3 cut(s) 78, 113, 804
AoxI GGCC 3 cut(s) 102, 116, 252
ApeKI GCWGC 4 cut(s) 176, 515, 527, 719
ArsI GACNNNNNNTTYG 2 cut(s) 165, 197
AspS9I GGNCC 2 cut(s) 116, 428
AsuC2I CCSGG 2 cut(s) 805, 806
AsuHPI GGTGA 3 cut(s) 90, 263, 793
AsuII TTCGAA 1 cut(s) 545
AvaI CYCGRG 3 cut(s) 78, 113, 804
AvaII GGWCC 1 cut(s) 428
BaeI ACNNNNGTAYC 2 cut(s) 433, 466
BamHI GGATCC 1 cut(s) 481
BanII GRGCYC 1 cut(s) 372
BbrPI CACGTG 1 cut(s) 44
BbsI GAAGAC 2 cut(s) 166, 348
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 4 cut(s) 188, 502, 514, 706
BccI CCATC 4 cut(s) 452, 490, 722, 782
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 1 cut(s) 687
BcnI CCSGG 2 cut(s) 805, 806
BcoDI GTCTC 1 cut(s) 676
BfaI CTAG 1 cut(s) 623
BisI GCNGC 6 cut(s) 139, 177, 516, 519, 528, 720
BlpI GCTNAGC 2 cut(s) 396, 854
BlsI GCNGC 6 cut(s) 140, 178, 517, 520, 529, 721
Bme1390I CCNGG 3 cut(s) 687, 805, 806
Bme18I GGWCC 1 cut(s) 428
BmeT110I CYCGRG 3 cut(s) 78, 113, 804
BmgT120I GGNCC 2 cut(s) 116, 428
BmiI GGNNCC 3 cut(s) 483, 619, 817
BmrFI CCNGG 3 cut(s) 687, 805, 806
BmsI GCATC 2 cut(s) 583, 595
BoxI GACNNNNGTC 1 cut(s) 80
BpiI GAAGAC 2 cut(s) 166, 348
Bpu10I CCTNAGC 1 cut(s) 510
Bpu1102I GCTNAGC 2 cut(s) 396, 854
Bpu14I TTCGAA 1 cut(s) 545
BpuMI CCSGG 2 cut(s) 805, 806
BsaAI YACGTR 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 846
BsaI GGTCTC 1 cut(s) 676
BsaJI CCNNGG 1 cut(s) 804
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse118I RCCGGY 2 cut(s) 100, 323
Bse1I ACTGG 3 cut(s) 293, 430, 873
BseBI CCWGG 1 cut(s) 687
BseDI CCNNGG 1 cut(s) 804
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMII CTCAG 4 cut(s) 387, 671, 754, 855
BseNI ACTGG 3 cut(s) 293, 430, 873
BseRI GAGGAG 1 cut(s) 267
BseX3I CGGCCG 1 cut(s) 102
BseXI GCAGC 4 cut(s) 188, 502, 514, 706
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 3 cut(s) 104, 118, 254
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 372
BsiHKCI CYCGRG 3 cut(s) 78, 113, 804
BsiSI CCGG 7 cut(s) 30, 101, 105, 119, 324, 805, 834
BslFI GGGAC 2 cut(s) 436, 745
BslI CCNNNNNNNGG 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 676
BsmFI GGGAC 2 cut(s) 436, 745
BsnI GGCC 3 cut(s) 104, 118, 254
Bso31I GGTCTC 1 cut(s) 676
BsoBI CYCGRG 3 cut(s) 78, 113, 804
Bsp119I TTCGAA 1 cut(s) 545
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 5 cut(s) 3, 107, 481, 763, 830
Bsp1720I GCTNAGC 2 cut(s) 396, 854
BspACI CCGC 4 cut(s) 138, 153, 353, 518
BspANI GGCC 3 cut(s) 104, 118, 254
BspCNI CTCAG 4 cut(s) 388, 672, 753, 854
BspLI GGNNCC 3 cut(s) 483, 619, 817
BspPI GGATC 5 cut(s) 115, 476, 489, 758, 825
BspT104I TTCGAA 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 676
BsrBI CCGCTC 1 cut(s) 138
BsrFI RCCGGY 2 cut(s) 100, 323
BsrI ACTGG 3 cut(s) 293, 430, 873
BssAI RCCGGY 2 cut(s) 100, 323
BssECI CCNNGG 1 cut(s) 804
BssMI GATC 5 cut(s) 3, 107, 481, 763, 830
BssNI GRCGYC 1 cut(s) 846
Bst2UI CCWGG 1 cut(s) 687
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 2 cut(s) 26, 291
BstACI GRCGYC 1 cut(s) 846
BstAPI GCANNNNNTGC 1 cut(s) 527
BstBAI YACGTR 1 cut(s) 44
BstBI TTCGAA 1 cut(s) 545
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 8 cut(s) 378, 396, 437, 510, 680, 740, 841, 854
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 5 cut(s) 6, 110, 484, 766, 833
BstMAI GTCTC 1 cut(s) 676
BstMBI GATC 5 cut(s) 3, 107, 481, 763, 830
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 5 cut(s) 101, 515, 524, 527, 843
BstNI CCWGG 1 cut(s) 687
BstNSI RCATGY 2 cut(s) 331, 716
BstPAI GACNNNNGTC 1 cut(s) 80
BstSCI CCNGG 3 cut(s) 685, 803, 804
BstV1I GCAGC 4 cut(s) 188, 502, 514, 706
BstV2I GAAGAC 2 cut(s) 166, 348
BstX2I RGATCY 2 cut(s) 481, 830
BstYI RGATCY 2 cut(s) 481, 830
BstZI CGGCCG 1 cut(s) 102
BsuRI GGCC 3 cut(s) 104, 118, 254
BtsCI GGATG 1 cut(s) 26
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 2 cut(s) 318, 528
Cac8I GCNNGC 1 cut(s) 329
CaiI CAGNNNCTG 1 cut(s) 527
Cfr10I RCCGGY 2 cut(s) 100, 323
Cfr13I GGNCC 2 cut(s) 116, 428
Cfr9I CCCGGG 1 cut(s) 804
CseI GACGC 4 cut(s) 101, 171, 297, 835
CsiI ACCWGGT 1 cut(s) 685
Csp6I GTAC 1 cut(s) 876
CviAII CATG 3 cut(s) 328, 713, 859
CviQI GTAC 1 cut(s) 876
DdeI CTNAG 8 cut(s) 378, 396, 437, 510, 680, 740, 841, 854
DpnI GATC 5 cut(s) 5, 109, 483, 765, 832
DpnII GATC 5 cut(s) 3, 107, 481, 763, 830
DraI TTTAAA 1 cut(s) 660
DrdI GACNNNNNNGTC 1 cut(s) 868
DseDI GACNNNNNNGTC 1 cut(s) 868
EaeI YGGCCR 2 cut(s) 102, 252
EagI CGGCCG 1 cut(s) 102
Eam1104I CTCTTC 2 cut(s) 26, 291
EarI CTCTTC 2 cut(s) 26, 291
Ecl136II GAGCTC 1 cut(s) 370
EclXI CGGCCG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 676
Eco47I GGWCC 1 cut(s) 428
Eco52I CGGCCG 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 370
Eco72I CACGTG 1 cut(s) 44
Eco88I CYCGRG 3 cut(s) 78, 113, 804
EcoICRI GAGCTC 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 685
EcoT38I GRGCYC 1 cut(s) 372
FaeI CATG 3 cut(s) 331, 716, 862
FaqI GGGAC 2 cut(s) 436, 745
FatI CATG 3 cut(s) 327, 712, 858
FauI CCCGC 1 cut(s) 346
Fnu4HI GCNGC 6 cut(s) 139, 177, 516, 519, 528, 720
FokI GGATG 1 cut(s) 13
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 6 cut(s) 139, 177, 516, 519, 528, 720
FspBI CTAG 1 cut(s) 623
GluI GCNGC 6 cut(s) 139, 177, 516, 519, 528, 720
HaeIII GGCC 3 cut(s) 104, 118, 254
HapII CCGG 7 cut(s) 30, 101, 105, 119, 324, 805, 834
HgaI GACGC 4 cut(s) 101, 171, 297, 835
Hin1I GRCGYC 1 cut(s) 846
Hin1II CATG 3 cut(s) 331, 716, 862
HincII GTYRAC 2 cut(s) 85, 649
HindII GTYRAC 2 cut(s) 85, 649
HinfI GANTC 3 cut(s) 81, 122, 693
HpaII CCGG 7 cut(s) 30, 101, 105, 119, 324, 805, 834
HphI GGTGA 3 cut(s) 90, 263, 793
Hpy166II GTNNAC 4 cut(s) 85, 271, 649, 692
Hpy188I TCNGA 6 cut(s) 75, 91, 135, 367, 467, 743
Hpy188III TCNNGA 2 cut(s) 761, 828
Hpy8I GTNNAC 4 cut(s) 85, 271, 649, 692
Hpy99I CGWCG 2 cut(s) 245, 851
HpyAV CCTTC 2 cut(s) 229, 379
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 2 cut(s) 43, 257
HpyCH4V TGCA 4 cut(s) 331, 608, 722, 772
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 515, 524, 527, 843
HpyF3I CTNAG 8 cut(s) 378, 396, 437, 510, 680, 740, 841, 854
HpySE526I ACGT 2 cut(s) 43, 257
Hsp92I GRCGYC 1 cut(s) 846
Hsp92II CATG 3 cut(s) 331, 716, 862
Kzo9I GATC 5 cut(s) 3, 107, 481, 763, 830
LmnI GCTCC 2 cut(s) 367, 709
Lsp1109I GCAGC 4 cut(s) 188, 502, 514, 706
LweI GCATC 2 cut(s) 583, 595
MabI ACCWGGT 1 cut(s) 685
MaeI CTAG 1 cut(s) 623
MaeII ACGT 2 cut(s) 43, 257
MaeIII GTNAC 3 cut(s) 34, 181, 356
MalI GATC 5 cut(s) 5, 109, 483, 765, 832
MbiI CCGCTC 1 cut(s) 138
MboI GATC 5 cut(s) 3, 107, 481, 763, 830
MboII GAAGA 9 cut(s) 13, 51, 54, 57, 60, 168, 171, 308, 353
MflI RGATCY 2 cut(s) 481, 830
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 3 cut(s) 201, 411, 882
MlyI GAGTC 3 cut(s) 90, 116, 687
MmeI TCCRAC 4 cut(s) 98, 345, 387, 595
MseI TTAA 2 cut(s) 659, 669
MslI CAYNNNNRTG 1 cut(s) 326
MspI CCGG 7 cut(s) 30, 101, 105, 119, 324, 805, 834
MspR9I CCNGG 3 cut(s) 687, 805, 806
MvaI CCWGG 1 cut(s) 687
MwoI GCNNNNNNNGC 5 cut(s) 101, 515, 524, 527, 843
NciI CCSGG 2 cut(s) 805, 806
NdeII GATC 5 cut(s) 3, 107, 481, 763, 830
NlaIII CATG 3 cut(s) 331, 716, 862
NlaIV GGNNCC 3 cut(s) 483, 619, 817
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 2 cut(s) 331, 716
NspV TTCGAA 1 cut(s) 545
PaeI GCATGC 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PkrI GCNGC 6 cut(s) 140, 178, 517, 520, 529, 721
PleI GAGTC 3 cut(s) 89, 116, 687
PmaCI CACGTG 1 cut(s) 44
PmlI CACGTG 1 cut(s) 44
PpsI GAGTC 3 cut(s) 89, 116, 687
Ppu21I YACGTR 1 cut(s) 44
PshAI GACNNNNGTC 1 cut(s) 80
PsiI TTATAA 1 cut(s) 887
Psp124BI GAGCTC 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 685
PspCI CACGTG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 685
PspN4I GGNNCC 3 cut(s) 483, 619, 817
PspPI GGNCC 2 cut(s) 116, 428
PstNI CAGNNNCTG 1 cut(s) 527
PsuI RGATCY 2 cut(s) 481, 830
RsaI GTAC 1 cut(s) 877
RsaNI GTAC 1 cut(s) 876
RseI CAYNNNNRTG 1 cut(s) 326
SacI GAGCTC 1 cut(s) 372
SaqAI TTAA 2 cut(s) 659, 669
SatI GCNGC 6 cut(s) 139, 177, 516, 519, 528, 720
Sau3AI GATC 5 cut(s) 3, 107, 481, 763, 830
Sau96I GGNCC 2 cut(s) 116, 428
SchI GAGTC 3 cut(s) 90, 116, 687
ScrFI CCNGG 3 cut(s) 687, 805, 806
SduI GDGCHC 1 cut(s) 372
SexAI ACCWGGT 1 cut(s) 685
SfaNI GCATC 2 cut(s) 583, 595
SfuI TTCGAA 1 cut(s) 545
SinI GGWCC 1 cut(s) 428
SmaI CCCGGG 1 cut(s) 806
SmiMI CAYNNNNRTG 1 cut(s) 326
SphI GCATGC 1 cut(s) 331
Sse9I AATT 3 cut(s) 201, 411, 882
SsiI CCGC 4 cut(s) 138, 153, 353, 518
SspMI CTAG 1 cut(s) 623
SstI GAGCTC 1 cut(s) 372
StyD4I CCNGG 3 cut(s) 685, 803, 804
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 2 cut(s) 46, 260
TaqI TCGA 5 cut(s) 171, 240, 280, 545, 849
TasI AATT 3 cut(s) 201, 411, 882
TauI GCSGC 2 cut(s) 141, 521
Tru1I TTAA 2 cut(s) 659, 669
Tru9I TTAA 2 cut(s) 659, 669
TscAI CASTG 2 cut(s) 318, 528
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 4 cut(s) 176, 515, 527, 719
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 157, 177, 309
TspMI CCCGGG 1 cut(s) 804
TspRI CASTG 2 cut(s) 318, 528
VpaK11BI GGWCC 1 cut(s) 428
XceI RCATGY 2 cut(s) 331, 716
XmaI CCCGGG 1 cut(s) 804
XspI CTAG 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.