RLG00000006262

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0009895
Physical Location & Seq
Reverse (-)
5716461 .. 5720001
3541 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006262

Sequence Viewer

Length: 969 bp
ATGATCCTTTACAGTCCTCTCTTCTCATCAGGCGTTACGCCACGTGGCAAAACCACATCTTCTTCTTCTCCGACCCGAGTCAACTCGGACGCTTCACCGGCCGGATCACTCGGGCCGGACTCGTTCTGTCCGAGCGGCTTATGTTCCTGCGGAAGAAGACGCTTCATCGAAGCAGCAGTCACTTCATCTCTATTCCCCTCCACCTCCGTCGCTTCCAAGTCGCAGTTCGACGATTATACGGCCACGTTGAGGAAAGTTCACCCTCCTCGACCGGACTGGTATGAAGAGTTGTACGCGTCAGTGTTGAACACCGGCATGCAATCGTACGAAGACGAGATTGCGGGTTACAAGTCGGAGCTCTTTGCTAAGTTGAAGGGAAAAGCTGAGAAGGTGTTGGAAATTGGTATAGGGACTGGTCCTAATCTACGATACTATGGTGCTGATGATGGTGTCCGAGTTTTCGGCGTGGATCCTAATAAAAAGATGGAAAGATATGCTATGGCTGCGGCCGTGGCTGCTGGTCTGCCCCTTTCGAACTTTGAGTTTATACAAGCAGTTGGGGAGGCTATACCATTAGATGATGCTTCTGTTGATGCAGTTGTTGGAACCCTTGTATTGTGTTCTGTAAAAGATGTCAACAAGACTCTAAAAGAGATTAAGAGAGTGCTGAGACCAGGTGGACTCTACTTGTTTGTGGAGCATGTGGCTGCAAAAGATGGGACAACCCTCAGATTTATACAGAGTGTTCTTGATCCTTTGCAACAAACCCTTGCCGATGGGTGTCATCTCACCCGGGAAACAGGAACCAACATATCCAGATCCGGCTTCTCAGGCGTCGAGCTTAGCATGACCTCCTTGTCCAGTACCTCAATTATAAACCCTCAAATCTATGGAACAGCTTGCAATCTCGCTGTTTCTTCTCGTGTTTCGTCACTGTCTCTAATCAAACTTAACATAGCCATCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

323

Amino Acids

34.39

Weight (kDa)

7.56

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_23 PF13489 113 - 237 9e-13 Methyltransferase domain
Methyltransf_31 PF13847 127 - 241 2.6e-10 Methyltransferase domain
Ubie_methyltran PF01209 130 - 234 1.7e-09 ubiE/COQ5 methyltransferase family
Methyltransf_25 PF13649 131 - 227 1.4e-16 Methyltransferase domain
Methyltransf_11 PF08241 132 - 231 8.2e-21 Methyltransferase domain
Methyltransf_12 PF08242 132 - 228 6e-11 Methyltransferase domain
Methyltransf_8 PF05148 189 - 233 5.9e-06 Hypothetical methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69520 AT1G69520 AT1G69523 AT1G69526 AT1G69526 AT1G69526
fragaria_vesca FvH4_4g31120 FvH4_4g31120
malus_domestica MD16G1070300.v1.1
prunus_persica Prupe.1G276900_v2.0.a1 Prupe.1G276900_v2.0.a1
pyrus_communis pycom16g06120
rosa_chinensis RchiOBHm_Chr4g0439511
rosa_laevigata RLG00000006262
rosa_multiflora Rmu_co8194290.1_g000001
rosa_roxburghii Rroxscaffold_5G00380430
rosa_samantha Rh4AG370300 Rh4BG382200 Rh4CG396800 Rh4DG376900
rosa_wichuraiana Rw4G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 875
AasI GACNNNNNNGTC 1 cut(s) 856
AccBSI CCGCTC 1 cut(s) 135
AccII CGCG 1 cut(s) 296
AciI CCGC 4 cut(s) 135, 150, 341, 506
AclWI GGATC 5 cut(s) 112, 464, 477, 746, 813
AcoI YGGCCR 3 cut(s) 99, 240, 507
AcvI CACGTG 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 834
AfaI GTAC 3 cut(s) 293, 326, 865
AfiI CCNNNNNNNGG 1 cut(s) 249
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 2 cut(s) 307, 373
AjnI CCWGG 1 cut(s) 673
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 5 cut(s) 358, 383, 841, 899, 966
AluI AGCT 5 cut(s) 358, 383, 841, 899, 966
Alw21I GWGCWC 1 cut(s) 360
Alw26I GTCTC 2 cut(s) 664, 942
AlwI GGATC 5 cut(s) 112, 464, 477, 746, 813
Ama87I CYCGRG 3 cut(s) 75, 110, 792
AoxI GGCC 4 cut(s) 99, 113, 240, 507
ApeKI GCWGC 4 cut(s) 173, 503, 515, 707
ArsI GACNNNNNNTTYG 2 cut(s) 162, 194
AspS9I GGNCC 2 cut(s) 113, 416
AsuC2I CCSGG 2 cut(s) 793, 794
AsuHPI GGTGA 3 cut(s) 87, 251, 781
AsuII TTCGAA 1 cut(s) 533
AvaI CYCGRG 3 cut(s) 75, 110, 792
AvaII GGWCC 1 cut(s) 416
BaeI ACNNNNGTAYC 2 cut(s) 421, 454
BamHI GGATCC 1 cut(s) 469
BanII GRGCYC 1 cut(s) 360
BauI CACGAG 1 cut(s) 921
BbrPI CACGTG 1 cut(s) 44
BbsI GAAGAC 2 cut(s) 163, 336
Bbv12I GWGCWC 1 cut(s) 360
BbvI GCAGC 4 cut(s) 185, 490, 502, 694
BccI CCATC 5 cut(s) 440, 478, 710, 770, 968
BceAI ACGGC 2 cut(s) 255, 494
BciT130I CCWGG 1 cut(s) 675
BcnI CCSGG 2 cut(s) 793, 794
BcoDI GTCTC 2 cut(s) 664, 942
BisI GCNGC 6 cut(s) 136, 174, 504, 507, 516, 708
BlpI GCTNAGC 1 cut(s) 842
BlsI GCNGC 6 cut(s) 137, 175, 505, 508, 517, 709
Bme1390I CCNGG 3 cut(s) 675, 793, 794
Bme18I GGWCC 1 cut(s) 416
BmeT110I CYCGRG 3 cut(s) 75, 110, 792
BmgT120I GGNCC 2 cut(s) 113, 416
BmiI GGNNCC 3 cut(s) 471, 607, 805
BmrFI CCNGG 3 cut(s) 675, 793, 794
BmsI GCATC 2 cut(s) 571, 583
BoxI GACNNNNGTC 1 cut(s) 77
BpiI GAAGAC 2 cut(s) 163, 336
Bpu1102I GCTNAGC 1 cut(s) 842
Bpu14I TTCGAA 1 cut(s) 533
BpuMI CCSGG 2 cut(s) 793, 794
BsaAI YACGTR 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 834
BsaI GGTCTC 1 cut(s) 664
BsaJI CCNNGG 2 cut(s) 510, 792
BsaWI WCCGGW 1 cut(s) 271
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse118I RCCGGY 2 cut(s) 97, 311
Bse1I ACTGG 3 cut(s) 281, 418, 861
BseBI CCWGG 1 cut(s) 675
BseDI CCNNGG 2 cut(s) 510, 792
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 4 cut(s) 375, 659, 742, 843
BseNI ACTGG 3 cut(s) 281, 418, 861
BseRI GAGGAG 1 cut(s) 255
BseX3I CGGCCG 2 cut(s) 99, 507
BseXI GCAGC 4 cut(s) 185, 490, 502, 694
Bsh1236I CGCG 1 cut(s) 296
Bsh1285I CGRYCG 3 cut(s) 102, 272, 510
BshFI GGCC 4 cut(s) 101, 115, 242, 509
BsiEI CGRYCG 3 cut(s) 102, 272, 510
BsiHKAI GWGCWC 1 cut(s) 360
BsiHKCI CYCGRG 3 cut(s) 75, 110, 792
BsiSI CCGG 7 cut(s) 98, 102, 116, 272, 312, 793, 822
BsiWI CGTACG 1 cut(s) 324
BslFI GGGAC 2 cut(s) 424, 733
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 2 cut(s) 664, 942
BsmFI GGGAC 2 cut(s) 424, 733
BsnI GGCC 4 cut(s) 101, 115, 242, 509
Bso31I GGTCTC 1 cut(s) 664
BsoBI CYCGRG 3 cut(s) 75, 110, 792
Bsp119I TTCGAA 1 cut(s) 533
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 5 cut(s) 3, 104, 469, 751, 818
Bsp1720I GCTNAGC 1 cut(s) 842
BspACI CCGC 4 cut(s) 135, 150, 341, 506
BspANI GGCC 4 cut(s) 101, 115, 242, 509
BspCNI CTCAG 4 cut(s) 376, 660, 741, 842
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 3 cut(s) 471, 607, 805
BspPI GGATC 5 cut(s) 112, 464, 477, 746, 813
BspT104I TTCGAA 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 664
BsrBI CCGCTC 1 cut(s) 135
BsrFI RCCGGY 2 cut(s) 97, 311
BsrI ACTGG 3 cut(s) 281, 418, 861
BssAI RCCGGY 2 cut(s) 97, 311
BssECI CCNNGG 2 cut(s) 510, 792
BssMI GATC 5 cut(s) 3, 104, 469, 751, 818
BssNI GRCGYC 1 cut(s) 834
BssSI CACGAG 1 cut(s) 921
Bst2BI CACGAG 1 cut(s) 921
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 2 cut(s) 14, 936
Bst6I CTCTTC 2 cut(s) 26, 279
BstACI GRCGYC 1 cut(s) 834
BstBAI YACGTR 1 cut(s) 44
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 2 cut(s) 317, 901
BstDEI CTNAG 6 cut(s) 366, 384, 668, 728, 829, 842
BstDSI CCRYGG 1 cut(s) 510
BstFNI CGCG 1 cut(s) 296
BstKTI GATC 5 cut(s) 6, 107, 472, 754, 821
BstMAI GTCTC 2 cut(s) 664, 942
BstMBI GATC 5 cut(s) 3, 104, 469, 751, 818
BstMCI CGRYCG 3 cut(s) 102, 272, 510
BstMWI GCNNNNNNNGC 5 cut(s) 98, 503, 512, 515, 831
BstNI CCWGG 1 cut(s) 675
BstNSI RCATGY 2 cut(s) 319, 704
BstPAI GACNNNNGTC 1 cut(s) 77
BstSCI CCNGG 3 cut(s) 673, 791, 792
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 4 cut(s) 185, 490, 502, 694
BstV2I GAAGAC 2 cut(s) 163, 336
BstX2I RGATCY 2 cut(s) 469, 818
BstYI RGATCY 2 cut(s) 469, 818
BstZI CGGCCG 2 cut(s) 99, 507
BsuRI GGCC 4 cut(s) 101, 115, 242, 509
BtgI CCRYGG 1 cut(s) 510
BtsIMutI CAGTG 2 cut(s) 306, 932
Cac8I GCNNGC 2 cut(s) 317, 901
Cfr10I RCCGGY 2 cut(s) 97, 311
Cfr13I GGNCC 2 cut(s) 113, 416
Cfr9I CCCGGG 1 cut(s) 792
CseI GACGC 4 cut(s) 98, 168, 285, 823
CsiI ACCWGGT 1 cut(s) 673
Csp6I GTAC 3 cut(s) 292, 325, 864
CviAII CATG 3 cut(s) 316, 701, 847
CviQI GTAC 3 cut(s) 292, 325, 864
DdeI CTNAG 6 cut(s) 366, 384, 668, 728, 829, 842
DpnI GATC 5 cut(s) 5, 106, 471, 753, 820
DpnII GATC 5 cut(s) 3, 104, 469, 751, 818
DrdI GACNNNNNNGTC 1 cut(s) 856
DseDI GACNNNNNNGTC 1 cut(s) 856
EaeI YGGCCR 3 cut(s) 99, 240, 507
EagI CGGCCG 2 cut(s) 99, 507
Eam1104I CTCTTC 2 cut(s) 26, 279
EarI CTCTTC 2 cut(s) 26, 279
Ecl136II GAGCTC 1 cut(s) 358
EclXI CGGCCG 2 cut(s) 99, 507
Eco24I GRGCYC 1 cut(s) 360
Eco31I GGTCTC 1 cut(s) 664
Eco47I GGWCC 1 cut(s) 416
Eco52I CGGCCG 2 cut(s) 99, 507
Eco53kI GAGCTC 1 cut(s) 358
Eco72I CACGTG 1 cut(s) 44
Eco88I CYCGRG 3 cut(s) 75, 110, 792
EcoICRI GAGCTC 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 673
EcoT38I GRGCYC 1 cut(s) 360
FaeI CATG 3 cut(s) 319, 704, 850
FaqI GGGAC 2 cut(s) 424, 733
FatI CATG 3 cut(s) 315, 700, 846
FauI CCCGC 1 cut(s) 334
Fnu4HI GCNGC 6 cut(s) 136, 174, 504, 507, 516, 708
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 6 cut(s) 136, 174, 504, 507, 516, 708
GluI GCNGC 6 cut(s) 136, 174, 504, 507, 516, 708
HaeIII GGCC 4 cut(s) 101, 115, 242, 509
HapII CCGG 7 cut(s) 98, 102, 116, 272, 312, 793, 822
HgaI GACGC 4 cut(s) 98, 168, 285, 823
Hin1I GRCGYC 1 cut(s) 834
Hin1II CATG 3 cut(s) 319, 704, 850
HincII GTYRAC 2 cut(s) 82, 637
HindII GTYRAC 2 cut(s) 82, 637
HinfI GANTC 4 cut(s) 78, 119, 643, 681
HpaII CCGG 7 cut(s) 98, 102, 116, 272, 312, 793, 822
HphI GGTGA 3 cut(s) 87, 251, 781
Hpy166II GTNNAC 4 cut(s) 82, 259, 637, 680
Hpy188I TCNGA 6 cut(s) 72, 88, 132, 355, 455, 731
Hpy188III TCNNGA 2 cut(s) 749, 816
Hpy8I GTNNAC 4 cut(s) 82, 259, 637, 680
Hpy99I CGWCG 3 cut(s) 212, 233, 839
HpyAV CCTTC 2 cut(s) 367, 382
HpyCH4III ACNGT 2 cut(s) 14, 936
HpyCH4IV ACGT 2 cut(s) 43, 245
HpyCH4V TGCA 5 cut(s) 319, 596, 710, 760, 903
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 503, 512, 515, 831
HpyF3I CTNAG 6 cut(s) 366, 384, 668, 728, 829, 842
HpySE526I ACGT 2 cut(s) 43, 245
Hsp92I GRCGYC 1 cut(s) 834
Hsp92II CATG 3 cut(s) 319, 704, 850
Kzo9I GATC 5 cut(s) 3, 104, 469, 751, 818
LmnI GCTCC 2 cut(s) 355, 697
Lsp1109I GCAGC 4 cut(s) 185, 490, 502, 694
LweI GCATC 2 cut(s) 571, 583
MabI ACCWGGT 1 cut(s) 673
MaeII ACGT 2 cut(s) 43, 245
MaeIII GTNAC 4 cut(s) 34, 178, 344, 930
MalI GATC 5 cut(s) 5, 106, 471, 753, 820
MbiI CCGCTC 1 cut(s) 135
MboI GATC 5 cut(s) 3, 104, 469, 751, 818
MboII GAAGA 9 cut(s) 13, 51, 54, 57, 165, 168, 296, 341, 909
MflI RGATCY 2 cut(s) 469, 818
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 2 cut(s) 399, 870
MluI ACGCGT 1 cut(s) 294
MlyI GAGTC 4 cut(s) 87, 113, 637, 675
MmeI TCCRAC 4 cut(s) 95, 333, 375, 583
MseI TTAA 2 cut(s) 657, 951
MslI CAYNNNNRTG 1 cut(s) 314
MspI CCGG 7 cut(s) 98, 102, 116, 272, 312, 793, 822
MspR9I CCNGG 3 cut(s) 675, 793, 794
MvaI CCWGG 1 cut(s) 675
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 5 cut(s) 98, 503, 512, 515, 831
NciI CCSGG 2 cut(s) 793, 794
NdeII GATC 5 cut(s) 3, 104, 469, 751, 818
NlaIII CATG 3 cut(s) 319, 704, 850
NlaIV GGNNCC 3 cut(s) 471, 607, 805
NmuCI GTSAC 2 cut(s) 178, 930
NspI RCATGY 2 cut(s) 319, 704
NspV TTCGAA 1 cut(s) 533
PaeI GCATGC 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 128
Pfl23II CGTACG 1 cut(s) 324
PkrI GCNGC 6 cut(s) 137, 175, 505, 508, 517, 709
PleI GAGTC 4 cut(s) 86, 113, 637, 675
PmaCI CACGTG 1 cut(s) 44
PmlI CACGTG 1 cut(s) 44
PpsI GAGTC 4 cut(s) 86, 113, 637, 675
Ppu21I YACGTR 1 cut(s) 44
PshAI GACNNNNGTC 1 cut(s) 77
PsiI TTATAA 1 cut(s) 875
Psp124BI GAGCTC 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 673
PspCI CACGTG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 673
PspLI CGTACG 1 cut(s) 324
PspN4I GGNNCC 3 cut(s) 471, 607, 805
PspPI GGNCC 2 cut(s) 113, 416
PsuI RGATCY 2 cut(s) 469, 818
RsaI GTAC 3 cut(s) 293, 326, 865
RsaNI GTAC 3 cut(s) 292, 325, 864
RseI CAYNNNNRTG 1 cut(s) 314
SacI GAGCTC 1 cut(s) 360
SaqAI TTAA 2 cut(s) 657, 951
SatI GCNGC 6 cut(s) 136, 174, 504, 507, 516, 708
Sau3AI GATC 5 cut(s) 3, 104, 469, 751, 818
Sau96I GGNCC 2 cut(s) 113, 416
SchI GAGTC 4 cut(s) 87, 113, 637, 675
ScrFI CCNGG 3 cut(s) 675, 793, 794
SduI GDGCHC 1 cut(s) 360
SexAI ACCWGGT 1 cut(s) 673
SfaNI GCATC 2 cut(s) 571, 583
SfuI TTCGAA 1 cut(s) 533
SinI GGWCC 1 cut(s) 416
SmaI CCCGGG 1 cut(s) 794
SmiMI CAYNNNNRTG 1 cut(s) 314
SphI GCATGC 1 cut(s) 319
Sse9I AATT 2 cut(s) 399, 870
SsiI CCGC 4 cut(s) 135, 150, 341, 506
SstI GAGCTC 1 cut(s) 360
StyD4I CCNGG 3 cut(s) 673, 791, 792
TaaI ACNGT 2 cut(s) 14, 936
TaiI ACGT 2 cut(s) 46, 248
TaqI TCGA 5 cut(s) 168, 228, 268, 533, 837
TasI AATT 2 cut(s) 399, 870
TauI GCSGC 2 cut(s) 138, 509
Tru1I TTAA 2 cut(s) 657, 951
Tru9I TTAA 2 cut(s) 657, 951
TscAI CASTG 2 cut(s) 306, 939
TseFI GTSAC 2 cut(s) 178, 930
TseI GCWGC 4 cut(s) 173, 503, 515, 707
Tsp45I GTSAC 2 cut(s) 178, 930
TspDTI ATGAA 3 cut(s) 154, 174, 297
TspGWI ACGGA 1 cut(s) 196
TspMI CCCGGG 1 cut(s) 792
TspRI CASTG 2 cut(s) 306, 939
VpaK11BI GGWCC 1 cut(s) 416
XceI RCATGY 2 cut(s) 319, 704
XmaI CCCGGG 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.