Rmu_co8194290.1_g000001

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8194290.1
OG0009895
Physical Location & Seq
Forward (+)
1 .. 703
703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8194290.1_g000001.1.cds

Sequence Viewer

Length: 296 bp
gttggggaggctataccattagatgatgcttctgttgatgcagttgttggaaccctagtattgtgttctgtaaaagatgtcaacaagactctaaaagagattaagagagtgctgagaccaggtggactctacttgtttgtggagcatgtggctgcaaaagatgggacagccctcagatttatacagagtgttcttgatcctttgcaacaaacccttgccgatgggtgtcatctcacccgggaaacaggaaccaatatatccagatccggcttctcaggcgtcgagcttagcatgac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

99

Amino Acids

10.55

Weight (kDa)

5.57

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69520 AT1G69520 AT1G69523 AT1G69526 AT1G69526 AT1G69526
fragaria_vesca FvH4_4g31120 FvH4_4g31120
malus_domestica MD16G1070300.v1.1
prunus_persica Prupe.1G276900_v2.0.a1 Prupe.1G276900_v2.0.a1
pyrus_communis pycom16g06120
rosa_chinensis RchiOBHm_Chr4g0439511
rosa_laevigata RLG00000006262
rosa_multiflora Rmu_co8194290.1_g000001
rosa_roxburghii Rroxscaffold_5G00380430
rosa_samantha Rh4AG370300 Rh4BG382200 Rh4CG396800 Rh4DG376900
rosa_wichuraiana Rw4G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 191, 258
AcyI GRCGYC 1 cut(s) 279
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 2 cut(s) 191, 258
Ama87I CYCGRG 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 152
AsuC2I CCSGG 2 cut(s) 238, 239
AsuHPI GGTGA 1 cut(s) 226
AvaI CYCGRG 1 cut(s) 237
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 155, 215
BciT130I CCWGG 1 cut(s) 120
BcnI CCSGG 2 cut(s) 238, 239
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 1 cut(s) 56
BisI GCNGC 1 cut(s) 153
BlpI GCTNAGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 3 cut(s) 120, 238, 239
BmeT110I CYCGRG 1 cut(s) 237
BmiI GGNNCC 2 cut(s) 52, 250
BmrFI CCNGG 3 cut(s) 120, 238, 239
BmsI GCATC 2 cut(s) 16, 28
Bpu1102I GCTNAGC 1 cut(s) 287
BpuMI CCSGG 2 cut(s) 238, 239
BsaHI GRCGYC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 237
BseMII CTCAG 3 cut(s) 104, 187, 288
BseXI GCAGC 1 cut(s) 139
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 2 cut(s) 238, 267
BslFI GGGAC 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 178
Bso31I GGTCTC 1 cut(s) 109
BsoBI CYCGRG 1 cut(s) 237
Bsp143I GATC 2 cut(s) 196, 263
Bsp1720I GCTNAGC 1 cut(s) 287
BspCNI CTCAG 3 cut(s) 105, 186, 287
BspLI GGNNCC 2 cut(s) 52, 250
BspPI GGATC 2 cut(s) 191, 258
BspTNI GGTCTC 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 2 cut(s) 196, 263
BssNI GRCGYC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 279
BstDEI CTNAG 4 cut(s) 113, 173, 274, 287
BstKTI GATC 2 cut(s) 199, 266
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 2 cut(s) 196, 263
BstMWI GCNNNNNNNGC 1 cut(s) 276
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 3 cut(s) 118, 236, 237
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
Cfr9I CCCGGG 1 cut(s) 237
CseI GACGC 1 cut(s) 268
CsiI ACCWGGT 1 cut(s) 118
CviAII CATG 2 cut(s) 146, 292
CviJI RGCY 5 cut(s) 11, 152, 170, 270, 286
CviKI_1 RGCY 5 cut(s) 11, 152, 170, 270, 286
DdeI CTNAG 4 cut(s) 113, 173, 274, 287
DpnI GATC 2 cut(s) 198, 265
DpnII GATC 2 cut(s) 196, 263
Eco31I GGTCTC 1 cut(s) 109
Eco88I CYCGRG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 118
FaeI CATG 2 cut(s) 149, 295
FaiI YATR 5 cut(s) 14, 147, 182, 257, 293
FaqI GGGAC 1 cut(s) 178
FatI CATG 2 cut(s) 145, 291
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 56
GluI GCNGC 1 cut(s) 153
HapII CCGG 2 cut(s) 238, 267
HgaI GACGC 1 cut(s) 268
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 2 cut(s) 149, 295
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 2 cut(s) 88, 126
HpaII CCGG 2 cut(s) 238, 267
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 2 cut(s) 82, 125
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 2 cut(s) 194, 261
Hpy8I GTNNAC 2 cut(s) 82, 125
Hpy99I CGWCG 1 cut(s) 284
HpyCH4V TGCA 3 cut(s) 41, 155, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 276
HpyF3I CTNAG 4 cut(s) 113, 173, 274, 287
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 2 cut(s) 149, 295
Kzo9I GATC 2 cut(s) 196, 263
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 7 cut(s) 105, 132, 231, 251, 261, 274, 280
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 16, 28
MabI ACCWGGT 1 cut(s) 118
MaeI CTAG 1 cut(s) 56
MalI GATC 2 cut(s) 198, 265
MboI GATC 2 cut(s) 196, 263
MflI RGATCY 1 cut(s) 263
MlyI GAGTC 2 cut(s) 82, 120
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 1 cut(s) 182
MseI TTAA 1 cut(s) 102
MspI CCGG 2 cut(s) 238, 267
MspR9I CCNGG 3 cut(s) 120, 238, 239
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 276
NciI CCSGG 2 cut(s) 238, 239
NdeII GATC 2 cut(s) 196, 263
NlaIII CATG 2 cut(s) 149, 295
NlaIV GGNNCC 2 cut(s) 52, 250
NspI RCATGY 1 cut(s) 149
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 2 cut(s) 82, 120
PpsI GAGTC 2 cut(s) 82, 120
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 52, 250
PsuI RGATCY 1 cut(s) 263
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 196, 263
SchI GAGTC 2 cut(s) 82, 120
ScrFI CCNGG 3 cut(s) 120, 238, 239
SetI ASST 2 cut(s) 124, 288
SexAI ACCWGGT 1 cut(s) 118
SfaNI GCATC 2 cut(s) 16, 28
SmaI CCCGGG 1 cut(s) 239
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 3 cut(s) 118, 236, 237
TaqI TCGA 1 cut(s) 282
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 1 cut(s) 152
TspMI CCCGGG 1 cut(s) 237
XceI RCATGY 1 cut(s) 149
XmaI CCCGGG 1 cut(s) 237
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.