Prupe.1G276900_v2.0.a1

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009895
Physical Location & Seq
Reverse (-)
28200711 .. 28202202
1492 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G276900.1

Sequence Viewer

Length: 924 bp
ATGATCCTTCACACCATTCCCTTCTCACCCAACATCGCGCCACGTGGCCTAATCACATCGCGTTCTGATTCTTTTCCAACCCGAGTCAACTCAGATGCTTCAACCGCCGGGTCACTCGCGCCGGACTCGTTCTGTTTCAGCGGCGTATGTTCGTGCGGAAGAAGGCGCTTCGTTGAAGCAGCAGTGGCCACATCATTATTCCCAATTTGCCCCTCCACCTCCATCGCTTCCAAATTGCCTTCTGATAATTATACGACCATATTAGAAGAAGTTCATCCTCCAAGACCAGACTGGTATGAAGAGTTCTATGCATCAGTCTTGAACACCTCCATGCAATCTTATGAAGACGAGATTGCAGGTTACAAGGCAGAGCTATTCGCTGAATTGAAGGGAAAAGCTCAGCAAGTGTTGGAAATTGGTATAGGGACTGGTCCTAATCTTAGATACTATGCTGCTGATAGTGGTGTCCGGGTTTTTGGTGTGGATCCGAATATAAAGATGGAAAAGTATGCTCGGGCTGCCGCCGTGGCTGCCGGTCTGCCCCTTTCGAATTTTGAGTTTGTACAAGCAGTTGGGGAGGCTATACCATTAGATGATGCTTCAGTTGATGCAGTTGTGGGAACCCTTGTATTGTGTTCTGTTAAAGATGTTGATAAGACTCTGAAAGAGATAAAGAGAGTGCTGAGACCAGGTGGAGTTTACCTGTTTGTGGAGCATGTGGCTGCAAAAGATGGAACACTCCTCAGATTTACACAGAGTATTCTTGATCCTCTGCAACAAACCCTAGCTGATGGGTGTCATCTCACCAGGGAAACGGGAAGGAGCATATCCAAGTCTGGCTTCTCAGATGTTAAGCTTAGCATGACCTCCTTGTCCAGTGCCTCCATCATAAACCCTCAACTCTTTGGAATAGCTTGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

308

Amino Acids

33.04

Weight (kDa)

5.66

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69520 AT1G69520 AT1G69523 AT1G69526 AT1G69526 AT1G69526
fragaria_vesca FvH4_4g31120 FvH4_4g31120
malus_domestica MD16G1070300.v1.1
prunus_persica Prupe.1G276900_v2.0.a1 Prupe.1G276900_v2.0.a1
pyrus_communis pycom16g06120
rosa_chinensis RchiOBHm_Chr4g0439511
rosa_laevigata RLG00000006262
rosa_multiflora Rmu_co8194290.1_g000001
rosa_roxburghii Rroxscaffold_5G00380430
rosa_samantha Rh4AG370300 Rh4BG382200 Rh4CG396800 Rh4DG376900
rosa_wichuraiana Rw4G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 871
Acc36I ACCTGC 1 cut(s) 347
AccII CGCG 3 cut(s) 38, 61, 119
AciI CCGC 4 cut(s) 105, 141, 156, 522
AclWI GGATC 3 cut(s) 479, 492, 761
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 585
AcvI CACGTG 1 cut(s) 44
AfaI GTAC 1 cut(s) 564
AfiI CCNNNNNNNGG 1 cut(s) 709
AgsI TTSAA 4 cut(s) 102, 176, 322, 388
AjnI CCWGG 2 cut(s) 688, 806
AjuI GAANNNNNNNTTGG 2 cut(s) 824, 856
AluBI AGCT 5 cut(s) 373, 398, 788, 856, 914
AluI AGCT 5 cut(s) 373, 398, 788, 856, 914
Alw26I GTCTC 1 cut(s) 679
AlwI GGATC 3 cut(s) 479, 492, 761
Ama87I CYCGRG 2 cut(s) 81, 513
AoxI GGCC 2 cut(s) 46, 186
ApeKI GCWGC 5 cut(s) 179, 452, 518, 530, 722
ApoI RAATTY 1 cut(s) 550
Asp700I GAANNNNTTC 1 cut(s) 270
AspLEI GCGC 3 cut(s) 40, 121, 168
AspS9I GGNCC 1 cut(s) 431
AsuC2I CCSGG 2 cut(s) 109, 470
AsuHPI GGTGA 2 cut(s) 18, 796
AsuII TTCGAA 1 cut(s) 548
AvaI CYCGRG 2 cut(s) 81, 513
AvaII GGWCC 1 cut(s) 431
BalI TGGCCA 1 cut(s) 188
BamHI GGATCC 1 cut(s) 484
BbrPI CACGTG 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 351
BbvI GCAGC 5 cut(s) 191, 439, 505, 517, 709
BccI CCATC 5 cut(s) 230, 493, 725, 785, 893
BceAI ACGGC 1 cut(s) 509
BciT130I CCWGG 2 cut(s) 690, 808
BcnI CCSGG 2 cut(s) 109, 470
BcoDI GTCTC 1 cut(s) 679
BfaI CTAG 1 cut(s) 785
BfoI RGCGCY 1 cut(s) 169
BfuAI ACCTGC 1 cut(s) 347
BglI GCCNNNNNGGC 1 cut(s) 527
BisI GCNGC 7 cut(s) 142, 180, 453, 519, 522, 531, 723
BlpI GCTNAGC 2 cut(s) 399, 857
BlsI GCNGC 7 cut(s) 143, 181, 454, 520, 523, 532, 724
Bme1390I CCNGG 4 cut(s) 109, 470, 690, 808
Bme18I GGWCC 1 cut(s) 431
BmeT110I CYCGRG 2 cut(s) 81, 513
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 2 cut(s) 486, 622
BmrFI CCNGG 4 cut(s) 109, 470, 690, 808
BmsI GCATC 4 cut(s) 85, 320, 586, 598
BpiI GAAGAC 1 cut(s) 351
Bpu1102I GCTNAGC 2 cut(s) 399, 857
Bpu14I TTCGAA 1 cut(s) 548
BpuMI CCSGG 2 cut(s) 109, 470
BsaAI YACGTR 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 679
BsaJI CCNNGG 2 cut(s) 525, 807
Bsc4I CCNNNNNNNGG 1 cut(s) 709
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 3 cut(s) 296, 433, 876
BseBI CCWGG 2 cut(s) 690, 808
BseDI CCNNGG 2 cut(s) 525, 807
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 709
BseMII CTCAG 5 cut(s) 105, 413, 674, 757, 858
BseNI ACTGG 3 cut(s) 296, 433, 876
BseRI GAGGAG 1 cut(s) 731
BseXI GCAGC 5 cut(s) 191, 439, 505, 517, 709
Bsh1236I CGCG 3 cut(s) 38, 61, 119
BshFI GGCC 2 cut(s) 48, 188
BsiHKCI CYCGRG 2 cut(s) 81, 513
BsiSI CCGG 4 cut(s) 108, 122, 469, 534
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 1 cut(s) 709
BsmAI GTCTC 1 cut(s) 679
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 2 cut(s) 48, 188
Bso31I GGTCTC 1 cut(s) 679
BsoBI CYCGRG 2 cut(s) 81, 513
Bsp119I TTCGAA 1 cut(s) 548
Bsp1407I TGTACA 1 cut(s) 562
Bsp143I GATC 3 cut(s) 3, 484, 766
Bsp1720I GCTNAGC 2 cut(s) 399, 857
BspACI CCGC 4 cut(s) 105, 141, 156, 522
BspANI GGCC 2 cut(s) 48, 188
BspCNI CTCAG 5 cut(s) 104, 412, 675, 756, 857
BspFNI CGCG 3 cut(s) 38, 61, 119
BspLI GGNNCC 2 cut(s) 486, 622
BspMI ACCTGC 1 cut(s) 347
BspPI GGATC 3 cut(s) 479, 492, 761
BspT104I TTCGAA 1 cut(s) 548
BspTNI GGTCTC 1 cut(s) 679
BsrFI RCCGGY 1 cut(s) 533
BsrGI TGTACA 1 cut(s) 562
BsrI ACTGG 3 cut(s) 296, 433, 876
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 2 cut(s) 525, 807
BssMI GATC 3 cut(s) 3, 484, 766
Bst2UI CCWGG 2 cut(s) 690, 808
Bst6I CTCTTC 1 cut(s) 294
BstAUI TGTACA 1 cut(s) 562
BstBAI YACGTR 1 cut(s) 44
BstBI TTCGAA 1 cut(s) 548
BstDEI CTNAG 7 cut(s) 91, 399, 440, 683, 743, 844, 857
BstDSI CCRYGG 1 cut(s) 525
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 3 cut(s) 38, 61, 119
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 3 cut(s) 40, 121, 168
BstKTI GATC 3 cut(s) 6, 487, 769
BstMAI GTCTC 1 cut(s) 679
BstMBI GATC 3 cut(s) 3, 484, 766
BstMWI GCNNNNNNNGC 5 cut(s) 104, 185, 518, 527, 530
BstNI CCWGG 2 cut(s) 690, 808
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 4 cut(s) 107, 468, 688, 806
BstUI CGCG 3 cut(s) 38, 61, 119
BstV1I GCAGC 5 cut(s) 191, 439, 505, 517, 709
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 2 cut(s) 48, 188
BtgI CCRYGG 1 cut(s) 525
BtgZI GCGATG 3 cut(s) 19, 42, 208
BtsCI GGATG 1 cut(s) 274
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 189, 883
BveI ACCTGC 1 cut(s) 347
CfoI GCGC 3 cut(s) 40, 121, 168
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 431
CsiI ACCWGGT 1 cut(s) 688
Csp6I GTAC 1 cut(s) 563
CviAII CATG 3 cut(s) 331, 716, 862
CviQI GTAC 1 cut(s) 563
DdeI CTNAG 7 cut(s) 91, 399, 440, 683, 743, 844, 857
DpnI GATC 3 cut(s) 5, 486, 768
DpnII GATC 3 cut(s) 3, 484, 766
DrdI GACNNNNNNGTC 1 cut(s) 871
DseDI GACNNNNNNGTC 1 cut(s) 871
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco31I GGTCTC 1 cut(s) 679
Eco47I GGWCC 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 585
Eco72I CACGTG 1 cut(s) 44
Eco88I CYCGRG 2 cut(s) 81, 513
EcoRII CCWGG 2 cut(s) 688, 806
EcoT22I ATGCAT 1 cut(s) 313
FaeI CATG 3 cut(s) 334, 719, 865
FalI AAGNNNNNCTT 2 cut(s) 824, 856
FaqI GGGAC 1 cut(s) 439
FatI CATG 3 cut(s) 330, 715, 861
Fnu4HI GCNGC 7 cut(s) 142, 180, 453, 519, 522, 531, 723
FokI GGATG 1 cut(s) 261
Fsp4HI GCNGC 7 cut(s) 142, 180, 453, 519, 522, 531, 723
FspBI CTAG 1 cut(s) 785
GlaI GCGC 3 cut(s) 39, 120, 167
GluI GCNGC 7 cut(s) 142, 180, 453, 519, 522, 531, 723
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 2 cut(s) 48, 188
HapII CCGG 4 cut(s) 108, 122, 469, 534
HhaI GCGC 3 cut(s) 40, 121, 168
Hin1II CATG 3 cut(s) 334, 719, 865
Hin6I GCGC 3 cut(s) 38, 119, 166
HinP1I GCGC 3 cut(s) 38, 119, 166
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 854
HinfI GANTC 4 cut(s) 68, 84, 125, 658
HpaII CCGG 4 cut(s) 108, 122, 469, 534
HphI GGTGA 2 cut(s) 18, 796
Hpy166II GTNNAC 2 cut(s) 88, 700
Hpy188I TCNGA 7 cut(s) 67, 94, 244, 489, 663, 746, 847
Hpy188III TCNNGA 2 cut(s) 319, 764
Hpy8I GTNNAC 2 cut(s) 88, 700
HpyAV CCTTC 6 cut(s) 17, 31, 156, 249, 382, 813
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 6 cut(s) 311, 334, 356, 611, 725, 775
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 185, 518, 527, 530
HpyF3I CTNAG 7 cut(s) 91, 399, 440, 683, 743, 844, 857
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 3 cut(s) 334, 719, 865
HspAI GCGC 3 cut(s) 38, 119, 166
Kzo9I GATC 3 cut(s) 3, 484, 766
LmnI GCTCC 2 cut(s) 712, 822
Lsp1109I GCAGC 5 cut(s) 191, 439, 505, 517, 709
LweI GCATC 4 cut(s) 85, 320, 586, 598
MabI ACCWGGT 1 cut(s) 688
MaeI CTAG 1 cut(s) 785
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 2 cut(s) 111, 359
MalI GATC 3 cut(s) 5, 486, 768
MboI GATC 3 cut(s) 3, 484, 766
MboII GAAGA 4 cut(s) 171, 278, 311, 356
MflI RGATCY 1 cut(s) 484
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 6 cut(s) 204, 233, 247, 383, 414, 550
MluNI TGGCCA 1 cut(s) 188
MlyI GAGTC 3 cut(s) 93, 119, 652
MmeI TCCRAC 2 cut(s) 101, 390
Mox20I TGGCCA 1 cut(s) 188
Mph1103I ATGCAT 1 cut(s) 313
MroXI GAANNNNTTC 1 cut(s) 270
MscI TGGCCA 1 cut(s) 188
MseI TTAA 2 cut(s) 642, 852
MslI CAYNNNNRTG 1 cut(s) 329
Msp20I TGGCCA 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 4 cut(s) 108, 122, 469, 534
MspR9I CCNGG 4 cut(s) 109, 470, 690, 808
MvaI CCWGG 2 cut(s) 690, 808
MvnI CGCG 3 cut(s) 38, 61, 119
MwoI GCNNNNNNNGC 5 cut(s) 104, 185, 518, 527, 530
NciI CCSGG 2 cut(s) 109, 470
NdeII GATC 3 cut(s) 3, 484, 766
NlaIII CATG 3 cut(s) 334, 719, 865
NlaIV GGNNCC 2 cut(s) 486, 622
NmuCI GTSAC 1 cut(s) 111
NsiI ATGCAT 1 cut(s) 313
NspI RCATGY 1 cut(s) 719
NspV TTCGAA 1 cut(s) 548
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 7 cut(s) 143, 181, 454, 520, 523, 532, 724
PleI GAGTC 3 cut(s) 92, 119, 652
PmaCI CACGTG 1 cut(s) 44
PmlI CACGTG 1 cut(s) 44
PpsI GAGTC 3 cut(s) 92, 119, 652
Ppu21I YACGTR 1 cut(s) 44
Psp6I CCWGG 2 cut(s) 688, 806
PspCI CACGTG 1 cut(s) 44
PspGI CCWGG 2 cut(s) 688, 806
PspN4I GGNNCC 2 cut(s) 486, 622
PspPI GGNCC 1 cut(s) 431
PsrI GAACNNNNNNTAC 2 cut(s) 287, 319
PsuI RGATCY 1 cut(s) 484
RsaI GTAC 1 cut(s) 564
RsaNI GTAC 1 cut(s) 563
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 2 cut(s) 642, 852
SatI GCNGC 7 cut(s) 142, 180, 453, 519, 522, 531, 723
Sau3AI GATC 3 cut(s) 3, 484, 766
Sau96I GGNCC 1 cut(s) 431
SchI GAGTC 3 cut(s) 93, 119, 652
ScrFI CCNGG 4 cut(s) 109, 470, 690, 808
SexAI ACCWGGT 1 cut(s) 688
SfaNI GCATC 4 cut(s) 85, 320, 586, 598
SfuI TTCGAA 1 cut(s) 548
SinI GGWCC 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 329
Sse9I AATT 6 cut(s) 204, 233, 247, 383, 414, 550
SsiI CCGC 4 cut(s) 105, 141, 156, 522
SspMI CTAG 1 cut(s) 785
StyD4I CCNGG 4 cut(s) 107, 468, 688, 806
TaiI ACGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 548
TasI AATT 6 cut(s) 204, 233, 247, 383, 414, 550
TatI WGTACW 1 cut(s) 562
TauI GCSGC 2 cut(s) 144, 524
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 2 cut(s) 642, 852
Tru9I TTAA 2 cut(s) 642, 852
TscAI CASTG 2 cut(s) 189, 883
TseFI GTSAC 1 cut(s) 111
TseI GCWGC 5 cut(s) 179, 452, 518, 530, 722
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 3 cut(s) 263, 312, 357
TspRI CASTG 2 cut(s) 189, 883
VpaK11BI GGWCC 1 cut(s) 431
XapI RAATTY 1 cut(s) 550
XceI RCATGY 1 cut(s) 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 785
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.