Rh4BG382200

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0009895
Physical Location & Seq
Forward (+)
53723484 .. 53725434
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG382200.1

Sequence Viewer

Length: 936 bp
ATGATCCTTTACAGTCCTCTCTTCTCATCCGGCGTTACGCCACGTGGCAAAACCACATCTTCTTCTTCTTCTTCTTCTTCTTATTCTCCGACCCGAGTCAACTCGGACGCTTCACCGGCCGGATCACTCGGGCCGGACTCGTTCTGTCCGAGCGGCTTATGTTCTTGCGGAAGAAGACGCTTCATCGAAGCAGCAGTCACTTCATCTCTATTCCCAATTTGCCCCTCCACCTCCTTCGCTTCCAAGTCGCAGTTCGACGATTATACGGCCACGTTGAGGAAAGTTCACCCTCCTCGACCAGACTGGTATGAAGAGTTGTATGCGTCAGTGTTGAACACCGGCATGCAATCTTACGAAGACGAGATTGCGGGTTACAAGTCGGAGCTCTTTGCTAAGTTGAAGGGAAAAGCTGAGCAAGTGTTGGAAATTGGTATAGGGACTGGTCCTAATCTAAGATACTATGGTGCTGATGATGGTGTCCGAGTTTTCGGCGTGGATCCTAATAAAAAGATGGAAAGATATGCTAAGGCTGCGGCCGTGGCTGCTGGTCTGCCCCTTTCGAACTTTGAGTTTATACAAGCAGTTGGGGAGGCTATACCATTAGATGATGCTTCTGTTGATGCAGTTGTTGGAACCCTTGTATTGTGTTCTGTAAAAGATGTCAACAAGACTCTAAAAGAGATTAAGAGAGTGCTGAGACCAGGTGGACTCTACTTGTTTGTGGAGCATGTGGCTGCAAAAGATGGGACAACCCTCAGATTTATACAGAGTGTTCTTGATCCTTTGCAACAAACCCTTGCCGATGGGTGTCATCTCACCCGGGAAACAGGAACCAATATATCCAGATCCGGCTTCTCAGGCGTCGAGCTTAGCATGACCTCCTTGTCCAGTACCTCAATTATAAACCCTCAAATCTATGGAATAGCTTGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

311

Amino Acids

33.32

Weight (kDa)

6.82

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_23 PF13489 122 - 246 1.7e-12 Methyltransferase domain
Methyltransf_31 PF13847 136 - 250 4.4e-11 Methyltransferase domain
Methyltransf_25 PF13649 140 - 236 3.2e-17 Methyltransferase domain
Methyltransf_11 PF08241 141 - 240 8.6e-22 Methyltransferase domain
Methyltransf_12 PF08242 141 - 237 1e-11 Methyltransferase domain
Ubie_methyltran PF01209 156 - 243 5.5e-10 ubiE/COQ5 methyltransferase family
Methyltransf_8 PF05148 198 - 242 5.4e-06 Hypothetical methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69520 AT1G69520 AT1G69523 AT1G69526 AT1G69526 AT1G69526
fragaria_vesca FvH4_4g31120 FvH4_4g31120
malus_domestica MD16G1070300.v1.1
prunus_persica Prupe.1G276900_v2.0.a1 Prupe.1G276900_v2.0.a1
pyrus_communis pycom16g06120
rosa_chinensis RchiOBHm_Chr4g0439511
rosa_laevigata RLG00000006262
rosa_multiflora Rmu_co8194290.1_g000001
rosa_roxburghii Rroxscaffold_5G00380430
rosa_samantha Rh4AG370300 Rh4BG382200 Rh4CG396800 Rh4DG376900
rosa_wichuraiana Rw4G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 902
AasI GACNNNNNNGTC 1 cut(s) 883
AccBSI CCGCTC 1 cut(s) 153
AciI CCGC 4 cut(s) 153, 168, 368, 533
AclWI GGATC 5 cut(s) 130, 491, 504, 773, 840
AcoI YGGCCR 3 cut(s) 117, 267, 534
AcvI CACGTG 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 861
AfaI GTAC 1 cut(s) 892
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 2 cut(s) 334, 400
AjnI CCWGG 1 cut(s) 700
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 4 cut(s) 385, 410, 868, 926
AluI AGCT 4 cut(s) 385, 410, 868, 926
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 1 cut(s) 691
AlwI GGATC 5 cut(s) 130, 491, 504, 773, 840
Ama87I CYCGRG 3 cut(s) 93, 128, 819
AoxI GGCC 4 cut(s) 117, 131, 267, 534
ApeKI GCWGC 4 cut(s) 191, 530, 542, 734
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AspS9I GGNCC 2 cut(s) 131, 443
AsuC2I CCSGG 2 cut(s) 820, 821
AsuHPI GGTGA 3 cut(s) 105, 278, 808
AsuII TTCGAA 1 cut(s) 560
AvaI CYCGRG 3 cut(s) 93, 128, 819
AvaII GGWCC 1 cut(s) 443
BaeI ACNNNNGTAYC 2 cut(s) 448, 481
BamHI GGATCC 1 cut(s) 496
BanII GRGCYC 1 cut(s) 387
BbrPI CACGTG 1 cut(s) 44
BbsI GAAGAC 2 cut(s) 181, 363
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 4 cut(s) 203, 517, 529, 721
BccI CCATC 4 cut(s) 467, 505, 737, 797
BceAI ACGGC 2 cut(s) 282, 521
BciT130I CCWGG 1 cut(s) 702
BcnI CCSGG 2 cut(s) 820, 821
BcoDI GTCTC 1 cut(s) 691
BisI GCNGC 6 cut(s) 154, 192, 531, 534, 543, 735
BlpI GCTNAGC 2 cut(s) 411, 869
BlsI GCNGC 6 cut(s) 155, 193, 532, 535, 544, 736
Bme1390I CCNGG 3 cut(s) 702, 820, 821
Bme18I GGWCC 1 cut(s) 443
BmeT110I CYCGRG 3 cut(s) 93, 128, 819
BmgT120I GGNCC 2 cut(s) 131, 443
BmiI GGNNCC 3 cut(s) 498, 634, 832
BmrFI CCNGG 3 cut(s) 702, 820, 821
BmsI GCATC 2 cut(s) 598, 610
BoxI GACNNNNGTC 1 cut(s) 95
BpiI GAAGAC 2 cut(s) 181, 363
Bpu10I CCTNAGC 1 cut(s) 525
Bpu1102I GCTNAGC 2 cut(s) 411, 869
Bpu14I TTCGAA 1 cut(s) 560
BpuMI CCSGG 2 cut(s) 820, 821
BsaAI YACGTR 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 861
BsaI GGTCTC 1 cut(s) 691
BsaJI CCNNGG 2 cut(s) 537, 819
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 2 cut(s) 115, 338
Bse1I ACTGG 3 cut(s) 308, 445, 888
BseBI CCWGG 1 cut(s) 702
BseDI CCNNGG 2 cut(s) 537, 819
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 4 cut(s) 402, 686, 769, 870
BseNI ACTGG 3 cut(s) 308, 445, 888
BseRI GAGGAG 1 cut(s) 282
BseX3I CGGCCG 2 cut(s) 117, 534
BseXI GCAGC 4 cut(s) 203, 517, 529, 721
Bsh1285I CGRYCG 2 cut(s) 120, 537
BshFI GGCC 4 cut(s) 119, 133, 269, 536
BsiEI CGRYCG 2 cut(s) 120, 537
BsiHKAI GWGCWC 1 cut(s) 387
BsiHKCI CYCGRG 3 cut(s) 93, 128, 819
BsiSI CCGG 7 cut(s) 30, 116, 120, 134, 339, 820, 849
BslFI GGGAC 2 cut(s) 451, 760
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 691
BsmFI GGGAC 2 cut(s) 451, 760
BsnI GGCC 4 cut(s) 119, 133, 269, 536
Bso31I GGTCTC 1 cut(s) 691
BsoBI CYCGRG 3 cut(s) 93, 128, 819
Bsp119I TTCGAA 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 5 cut(s) 3, 122, 496, 778, 845
Bsp1720I GCTNAGC 2 cut(s) 411, 869
BspACI CCGC 4 cut(s) 153, 168, 368, 533
BspANI GGCC 4 cut(s) 119, 133, 269, 536
BspCNI CTCAG 4 cut(s) 403, 687, 768, 869
BspLI GGNNCC 3 cut(s) 498, 634, 832
BspPI GGATC 5 cut(s) 130, 491, 504, 773, 840
BspT104I TTCGAA 1 cut(s) 560
BspTNI GGTCTC 1 cut(s) 691
BsrBI CCGCTC 1 cut(s) 153
BsrFI RCCGGY 2 cut(s) 115, 338
BsrI ACTGG 3 cut(s) 308, 445, 888
BssAI RCCGGY 2 cut(s) 115, 338
BssECI CCNNGG 2 cut(s) 537, 819
BssMI GATC 5 cut(s) 3, 122, 496, 778, 845
BssNI GRCGYC 1 cut(s) 861
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 2 cut(s) 26, 306
BstACI GRCGYC 1 cut(s) 861
BstBAI YACGTR 1 cut(s) 44
BstBI TTCGAA 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 344, 928
BstDEI CTNAG 8 cut(s) 393, 411, 452, 525, 695, 755, 856, 869
BstDSI CCRYGG 1 cut(s) 537
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 5 cut(s) 6, 125, 499, 781, 848
BstMAI GTCTC 1 cut(s) 691
BstMBI GATC 5 cut(s) 3, 122, 496, 778, 845
BstMCI CGRYCG 2 cut(s) 120, 537
BstMWI GCNNNNNNNGC 5 cut(s) 116, 530, 539, 542, 858
BstNI CCWGG 1 cut(s) 702
BstNSI RCATGY 2 cut(s) 346, 731
BstPAI GACNNNNGTC 1 cut(s) 95
BstSCI CCNGG 3 cut(s) 700, 818, 819
BstV1I GCAGC 4 cut(s) 203, 517, 529, 721
BstV2I GAAGAC 2 cut(s) 181, 363
BstX2I RGATCY 2 cut(s) 496, 845
BstYI RGATCY 2 cut(s) 496, 845
BstZI CGGCCG 2 cut(s) 117, 534
BsuRI GGCC 4 cut(s) 119, 133, 269, 536
BtgI CCRYGG 1 cut(s) 537
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 2 cut(s) 344, 928
Cfr10I RCCGGY 2 cut(s) 115, 338
Cfr13I GGNCC 2 cut(s) 131, 443
Cfr9I CCCGGG 1 cut(s) 819
CseI GACGC 4 cut(s) 116, 186, 312, 850
CsiI ACCWGGT 1 cut(s) 700
Csp6I GTAC 1 cut(s) 891
CviAII CATG 3 cut(s) 343, 728, 874
CviQI GTAC 1 cut(s) 891
DdeI CTNAG 8 cut(s) 393, 411, 452, 525, 695, 755, 856, 869
DpnI GATC 5 cut(s) 5, 124, 498, 780, 847
DpnII GATC 5 cut(s) 3, 122, 496, 778, 845
DrdI GACNNNNNNGTC 1 cut(s) 883
DseDI GACNNNNNNGTC 1 cut(s) 883
EaeI YGGCCR 3 cut(s) 117, 267, 534
EagI CGGCCG 2 cut(s) 117, 534
Eam1104I CTCTTC 2 cut(s) 26, 306
EarI CTCTTC 2 cut(s) 26, 306
Ecl136II GAGCTC 1 cut(s) 385
EclXI CGGCCG 2 cut(s) 117, 534
Eco24I GRGCYC 1 cut(s) 387
Eco31I GGTCTC 1 cut(s) 691
Eco47I GGWCC 1 cut(s) 443
Eco52I CGGCCG 2 cut(s) 117, 534
Eco53kI GAGCTC 1 cut(s) 385
Eco72I CACGTG 1 cut(s) 44
Eco88I CYCGRG 3 cut(s) 93, 128, 819
EcoICRI GAGCTC 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 700
EcoT38I GRGCYC 1 cut(s) 387
FaeI CATG 3 cut(s) 346, 731, 877
FaqI GGGAC 2 cut(s) 451, 760
FatI CATG 3 cut(s) 342, 727, 873
FauI CCCGC 1 cut(s) 361
Fnu4HI GCNGC 6 cut(s) 154, 192, 531, 534, 543, 735
FokI GGATG 1 cut(s) 13
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 6 cut(s) 154, 192, 531, 534, 543, 735
GluI GCNGC 6 cut(s) 154, 192, 531, 534, 543, 735
HaeIII GGCC 4 cut(s) 119, 133, 269, 536
HapII CCGG 7 cut(s) 30, 116, 120, 134, 339, 820, 849
HgaI GACGC 4 cut(s) 116, 186, 312, 850
Hin1I GRCGYC 1 cut(s) 861
Hin1II CATG 3 cut(s) 346, 731, 877
HincII GTYRAC 2 cut(s) 100, 664
HindII GTYRAC 2 cut(s) 100, 664
HinfI GANTC 4 cut(s) 96, 137, 670, 708
HpaII CCGG 7 cut(s) 30, 116, 120, 134, 339, 820, 849
HphI GGTGA 3 cut(s) 105, 278, 808
Hpy166II GTNNAC 4 cut(s) 100, 286, 664, 707
Hpy188I TCNGA 6 cut(s) 90, 106, 150, 382, 482, 758
Hpy188III TCNNGA 2 cut(s) 776, 843
Hpy8I GTNNAC 4 cut(s) 100, 286, 664, 707
Hpy99I CGWCG 2 cut(s) 260, 866
HpyAV CCTTC 2 cut(s) 244, 394
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 2 cut(s) 43, 272
HpyCH4V TGCA 5 cut(s) 346, 623, 737, 787, 930
HpyF10VI GCNNNNNNNGC 5 cut(s) 116, 530, 539, 542, 858
HpyF3I CTNAG 8 cut(s) 393, 411, 452, 525, 695, 755, 856, 869
HpySE526I ACGT 2 cut(s) 43, 272
Hsp92I GRCGYC 1 cut(s) 861
Hsp92II CATG 3 cut(s) 346, 731, 877
Kzo9I GATC 5 cut(s) 3, 122, 496, 778, 845
LmnI GCTCC 2 cut(s) 382, 724
Lsp1109I GCAGC 4 cut(s) 203, 517, 529, 721
LweI GCATC 2 cut(s) 598, 610
MabI ACCWGGT 1 cut(s) 700
MaeII ACGT 2 cut(s) 43, 272
MaeIII GTNAC 3 cut(s) 34, 196, 371
MalI GATC 5 cut(s) 5, 124, 498, 780, 847
MbiI CCGCTC 1 cut(s) 153
MboI GATC 5 cut(s) 3, 122, 496, 778, 845
MflI RGATCY 2 cut(s) 496, 845
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 3 cut(s) 216, 426, 897
MlyI GAGTC 4 cut(s) 105, 131, 664, 702
MmeI TCCRAC 4 cut(s) 113, 360, 402, 610
MseI TTAA 1 cut(s) 684
MslI CAYNNNNRTG 1 cut(s) 341
MspI CCGG 7 cut(s) 30, 116, 120, 134, 339, 820, 849
MspR9I CCNGG 3 cut(s) 702, 820, 821
MvaI CCWGG 1 cut(s) 702
MwoI GCNNNNNNNGC 5 cut(s) 116, 530, 539, 542, 858
NciI CCSGG 2 cut(s) 820, 821
NdeII GATC 5 cut(s) 3, 122, 496, 778, 845
NlaIII CATG 3 cut(s) 346, 731, 877
NlaIV GGNNCC 3 cut(s) 498, 634, 832
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 2 cut(s) 346, 731
NspV TTCGAA 1 cut(s) 560
PaeI GCATGC 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PkrI GCNGC 6 cut(s) 155, 193, 532, 535, 544, 736
PleI GAGTC 4 cut(s) 104, 131, 664, 702
PmaCI CACGTG 1 cut(s) 44
PmlI CACGTG 1 cut(s) 44
PpsI GAGTC 4 cut(s) 104, 131, 664, 702
Ppu21I YACGTR 1 cut(s) 44
PshAI GACNNNNGTC 1 cut(s) 95
PsiI TTATAA 1 cut(s) 902
Psp124BI GAGCTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 700
PspCI CACGTG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 700
PspN4I GGNNCC 3 cut(s) 498, 634, 832
PspPI GGNCC 2 cut(s) 131, 443
PsuI RGATCY 2 cut(s) 496, 845
RsaI GTAC 1 cut(s) 892
RsaNI GTAC 1 cut(s) 891
RseI CAYNNNNRTG 1 cut(s) 341
SacI GAGCTC 1 cut(s) 387
SaqAI TTAA 1 cut(s) 684
SatI GCNGC 6 cut(s) 154, 192, 531, 534, 543, 735
Sau3AI GATC 5 cut(s) 3, 122, 496, 778, 845
Sau96I GGNCC 2 cut(s) 131, 443
SchI GAGTC 4 cut(s) 105, 131, 664, 702
ScrFI CCNGG 3 cut(s) 702, 820, 821
SduI GDGCHC 1 cut(s) 387
SexAI ACCWGGT 1 cut(s) 700
SfaNI GCATC 2 cut(s) 598, 610
SfuI TTCGAA 1 cut(s) 560
SinI GGWCC 1 cut(s) 443
SmaI CCCGGG 1 cut(s) 821
SmiMI CAYNNNNRTG 1 cut(s) 341
SphI GCATGC 1 cut(s) 346
Sse9I AATT 3 cut(s) 216, 426, 897
SsiI CCGC 4 cut(s) 153, 168, 368, 533
SstI GAGCTC 1 cut(s) 387
StyD4I CCNGG 3 cut(s) 700, 818, 819
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 2 cut(s) 46, 275
TaqI TCGA 5 cut(s) 186, 255, 295, 560, 864
TasI AATT 3 cut(s) 216, 426, 897
TauI GCSGC 2 cut(s) 156, 536
Tru1I TTAA 1 cut(s) 684
Tru9I TTAA 1 cut(s) 684
TscAI CASTG 1 cut(s) 333
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 4 cut(s) 191, 530, 542, 734
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 3 cut(s) 172, 192, 324
TspMI CCCGGG 1 cut(s) 819
TspRI CASTG 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 443
XceI RCATGY 2 cut(s) 346, 731
XmaI CCCGGG 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.