AT1G69750

Cytochrome c oxidase assembly protein COX19-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005661
Physical Location & Seq
Forward (+)
26235071 .. 26238542
3472 bp
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UTR
Exon/CDS
Intron
AT1G69750.1

Sequence Viewer

Length: 297 bp
ATGAGTACAGGTGGAGCATTTGGAGGAAACAGAGGATTAAGACCAATACCACCAGAGAAGGGCATTTTCCCTTTGGATCACTTGCACGAGTGTGATGCGGAGAAGAAAGAATATCTAGGTTGTCTTAAGTCTTCAGCTCACAAATCTGAACAATGTAGACATCTCTCTAAGAAATATCTCCAGTGTCGAATGGCTAAGAACTTGATGGCAAAGCAGGATATGGCTGAACTTGGATTCAGTGGTGTTAAAGAACTTGATTCCACTGAAGATAAGAATACAGAGAGTATCGAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CHCH

Protein Analysis

98

Amino Acids

10.94

Weight (kDa)

6.95

Isoelectric Point (pI)

59.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 31 - 65 1.7e-08 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 157
AciI CCGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 84
AcuI CTGAAG 2 cut(s) 117, 285
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 59
AflII CTTAAG 1 cut(s) 125
AleI CACNNNNGTG 1 cut(s) 90
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AlwI GGATC 1 cut(s) 84
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 123
BccI CCATC 1 cut(s) 199
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BfaI CTAG 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 125
BmsI GCATC 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 59
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 1 cut(s) 98
BspPI GGATC 1 cut(s) 84
BspTI CTTAAG 1 cut(s) 125
BsrI ACTGG 1 cut(s) 181
BssMI GATC 1 cut(s) 76
BssSI CACGAG 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 86
BstAFI CTTAAG 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 168, 195
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 123
BtsIMutI CAGTG 3 cut(s) 188, 244, 261
Csp6I GTAC 1 cut(s) 6
CviJI RGCY 3 cut(s) 137, 194, 224
CviKI_1 RGCY 3 cut(s) 137, 194, 224
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 2 cut(s) 168, 195
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eco57I CTGAAG 2 cut(s) 117, 285
FaiI YATR 1 cut(s) 221
FblI GTMKAC 1 cut(s) 157
FspBI CTAG 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 164
HinfI GANTC 2 cut(s) 234, 257
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 85
HpyF3I CTNAG 2 cut(s) 168, 195
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 3 cut(s) 66, 194, 200
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 116
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 3 cut(s) 115, 123, 278
MnlI CCTC 2 cut(s) 17, 26
MseI TTAA 3 cut(s) 38, 126, 246
MslI CAYNNNNRTG 1 cut(s) 90
MspCI CTTAAG 1 cut(s) 125
NdeII GATC 1 cut(s) 76
OliI CACNNNNGTG 1 cut(s) 90
PfeI GAWTC 2 cut(s) 234, 257
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 3 cut(s) 38, 126, 246
Sau3AI GATC 1 cut(s) 76
SetI ASST 3 cut(s) 13, 121, 139
SfaNI GCATC 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SsiI CCGC 1 cut(s) 98
SspMI CTAG 1 cut(s) 116
TaqI TCGA 2 cut(s) 187, 288
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 2 cut(s) 234, 257
Tru1I TTAA 3 cut(s) 38, 126, 246
Tru9I TTAA 3 cut(s) 38, 126, 246
TscAI CASTG 3 cut(s) 188, 244, 268
TspRI CASTG 3 cut(s) 188, 244, 268
Vha464I CTTAAG 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 157
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.