Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005661

Physical Location & Seq

Genomic Coordinates Forward (+)

4505443 .. 4508106

Gene Structure 2664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G063000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAGTGCAGGTGGTGCCTTTGGTGGTAATAGGGGACTGAGCCCGGTTCCTCCAGAGAAAGGTGTCTTCCCTTTGGATCATATGCATTTGTGTGACCTGGACAAAAAAGAATACCTCAGTTGTCTCAAAACTTCGGGCCACCAATCTGAAAAATGTAGGCTCTTCTCGAAAAAGTACCTGGAGTGCCGCATGGAAAAGAACTTGATGGCCAAACAAGACATGTCAGAACTTGGGTTTGTTAAGGAAAGTAACTTGGAGGCTTCTGGAGAGAAGGTTACTGAGAGGATTGGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

CHCH

Protein Analysis

99

Amino Acids

10.9

Weight (kDa)

7.67

Isoelectric Point (pI)

62.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66590 AT1G66590 AT1G69750 AT1G69750 AT1G69750 AT1G69750 AT1G69750
malus_domestica	MD09G1206900.v1.1 MD17G1187600.v1.1
prunus_persica	Prupe.3G063000_v2.0.a1 Prupe.3G063000_v2.0.a1 Prupe.3G063000_v2.0.a1
pyrus_communis	pycom09g12330
rosa_chinensis	RchiOBHm_Chr2g0139621 RchiOBHm_Chr4g0404221 RchiOBHm_Chr5g0082321 RchiOBHm_Chr5g0082611
rosa_laevigata	RLG00000000932
rosa_roxburghii	Rroxscaffold_1G00070570 Rroxscaffold_2G00105340 Rroxscaffold_4G00307960
rosa_samantha	Rh1BG316700 Rh2DG428300 Rh4AG244800 Rh4CG032600 Rh5AG293100
rosa_wichuraiana	Rw2G033500 Rw6G004180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	84
AcoI	YGGCCR	1 cut(s)	207
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	219
AjnI	CCWGG	2 cut(s)	96, 177
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	84
AoxI	GGCC	2 cut(s)	136, 207
AspS9I	GGNCC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	58
BccI	CCATC	1 cut(s)	199
BciT130I	CCWGG	2 cut(s)	98, 179
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	128
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme1390I	CCNGG	3 cut(s)	44, 98, 179
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	16, 48
BmrFI	CCNGG	3 cut(s)	44, 98, 179
BpiI	GAAGAC	1 cut(s)	58
BpmI	CTGGAG	3 cut(s)	36, 200, 285
BpuMI	CCSGG	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	98, 179
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	3 cut(s)	29, 130, 270
BsgI	GTGCAG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	138, 209
BshNI	GGYRCC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	48
BsnI	GGCC	2 cut(s)	138, 209
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	2 cut(s)	138, 209
BspCNI	CTCAG	3 cut(s)	30, 129, 271
BspLI	GGNNCC	2 cut(s)	16, 48
BspPI	GGATC	1 cut(s)	84
BspQI	GCTCTTC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	14
BssMI	GATC	1 cut(s)	76
Bst2UI	CCWGG	2 cut(s)	98, 179
Bst6I	CTCTTC	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstDEI	CTNAG	3 cut(s)	38, 116, 279
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	2 cut(s)	98, 179
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	3 cut(s)	42, 96, 177
BstV2I	GAAGAC	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	138, 209
Cfr13I	GGNCC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	2 cut(s)	190, 220
CviJI	RGCY	5 cut(s)	42, 138, 160, 209, 260
CviKI_1	RGCY	5 cut(s)	42, 138, 160, 209, 260
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	3 cut(s)	38, 116, 279
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	96, 177
EcoT22I	ATGCAT	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	2 cut(s)	193, 223
FaiI	YATR	4 cut(s)	81, 83, 191, 221
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	2 cut(s)	189, 219
FauNDI	CATATG	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	187
GsuI	CTGGAG	3 cut(s)	36, 200, 285
HaeIII	GGCC	2 cut(s)	138, 209
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	2 cut(s)	193, 223
HpaII	CCGG	1 cut(s)	44
Hpy188I	TCNGA	2 cut(s)	148, 226
Hpy188III	TCNNGA	3 cut(s)	53, 166, 264
HpyAV	CCTTC	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	8, 85
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	3 cut(s)	38, 116, 279
Hsp92II	CATG	2 cut(s)	193, 223
Kzo9I	GATC	1 cut(s)	76
LguI	GCTCTTC	1 cut(s)	167
LpnPI	CCDG	7 cut(s)	57, 66, 83, 110, 164, 191, 249
MaeIII	GTNAC	3 cut(s)	92, 248, 274
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	2 cut(s)	58, 154
MhlI	GDGCHC	1 cut(s)	44
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	1 cut(s)	292
MluNI	TGGCCA	1 cut(s)	209
MnlI	CCTC	4 cut(s)	60, 125, 250, 276
Mox20I	TGGCCA	1 cut(s)	209
Mph1103I	ATGCAT	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	209
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	3 cut(s)	44, 98, 179
MvaI	CCWGG	2 cut(s)	98, 179
MwoI	GCNNNNNNNGC	1 cut(s)	14
NciI	CCSGG	1 cut(s)	44
NdeI	CATATG	1 cut(s)	81
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	193, 223
NlaIV	GGNNCC	2 cut(s)	16, 48
NmuCI	GTSAC	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	87
NspI	RCATGY	1 cut(s)	223
PciI	ACATGT	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	188
PscI	ACATGT	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	96, 177
PspGI	CCWGG	2 cut(s)	96, 177
PspN4I	GGNNCC	2 cut(s)	16, 48
PspPI	GGNCC	1 cut(s)	136
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	136
ScrFI	CCNGG	3 cut(s)	44, 98, 179
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	6 cut(s)	13, 64, 99, 117, 180, 276
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	292
SsiI	CCGC	1 cut(s)	187
StyD4I	CCNGG	3 cut(s)	42, 96, 177
TaqI	TCGA	1 cut(s)	167
TasI	AATT	1 cut(s)	292
TauI	GCSGC	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	92
XceI	RCATGY	1 cut(s)	223
Zsp2I	ATGCAT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.