Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005661

Physical Location & Seq

Genomic Coordinates Forward (+)

8136485 .. 8139816

Gene Structure 3332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000932

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAAATACACATGTGGTGCCTTTGGTGGTAATAGGGGAGTCAGTCCAGTTCCTTCAAAGAAAGGTGTCTTCCCTTTGGATCATATGCATTTGTGTGACCAGGCAGAAAGGGAATACCTCAATTGTCTGAAAACTTTGGGCCACCAATCTGAAAAATGTAGACACTTCTCAAAATTGTACCTGAAGAGCCGCACGGAAAATTACGCTGTTCACAATCATGATGCTAGTAATTTATGGACTAACAAGCGTTTACTATGGAATCATGATTTTGGCATAACATGCCTGGGAAAGAGGAAACCCTCGAGGCAGATGATAGCTTGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

CHCH

Protein Analysis

109

Amino Acids

12.44

Weight (kDa)

9.51

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66590 AT1G66590 AT1G69750 AT1G69750 AT1G69750 AT1G69750 AT1G69750
malus_domestica	MD09G1206900.v1.1 MD17G1187600.v1.1
prunus_persica	Prupe.3G063000_v2.0.a1 Prupe.3G063000_v2.0.a1 Prupe.3G063000_v2.0.a1
pyrus_communis	pycom09g12330
rosa_chinensis	RchiOBHm_Chr2g0139621 RchiOBHm_Chr4g0404221 RchiOBHm_Chr5g0082321 RchiOBHm_Chr5g0082611
rosa_laevigata	RLG00000000932
rosa_roxburghii	Rroxscaffold_1G00070570 Rroxscaffold_2G00105340 Rroxscaffold_4G00307960
rosa_samantha	Rh1BG316700 Rh2DG428300 Rh4AG244800 Rh4CG032600 Rh5AG293100
rosa_wichuraiana	Rw2G033500 Rw6G004180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	301
AccB1I	GGYRCC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	1 cut(s)	190
AclWI	GGATC	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	57
AjnI	CCWGG	2 cut(s)	99, 282
AluBI	AGCT	1 cut(s)	317
AluI	AGCT	1 cut(s)	317
AlwI	GGATC	1 cut(s)	87
Ama87I	CYCGRG	1 cut(s)	301
AoxI	GGCC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	139
AvaI	CYCGRG	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	61
BciT130I	CCWGG	2 cut(s)	101, 284
BfaI	CTAG	1 cut(s)	225
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
Bme1390I	CCNGG	2 cut(s)	101, 284
BmeT110I	CYCGRG	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	2 cut(s)	101, 284
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	101, 284
BseDI	CCNNGG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	301
BsnI	GGCC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	301
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	1 cut(s)	190
BspANI	GGCC	1 cut(s)	141
BspHI	TCATGA	2 cut(s)	217, 262
BspLI	GGNNCC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	87
BspQI	GCTCTTC	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	1 cut(s)	79
Bst2UI	CCWGG	2 cut(s)	101, 284
Bst6I	CTCTTC	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	319
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstNI	CCWGG	2 cut(s)	101, 284
BstNSI	RCATGY	2 cut(s)	15, 282
BstSCI	CCNGG	2 cut(s)	99, 282
BstV2I	GAAGAC	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	319
CciI	TCATGA	2 cut(s)	217, 262
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	4 cut(s)	12, 218, 263, 279
CviJI	RGCY	3 cut(s)	141, 189, 317
CviKI_1	RGCY	3 cut(s)	141, 189, 317
CviQI	GTAC	1 cut(s)	178
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	99, 282
EcoT22I	ATGCAT	1 cut(s)	90
FaeI	CATG	4 cut(s)	15, 221, 266, 282
FaiI	YATR	9 cut(s)	13, 84, 86, 219, 235, 256, 264, 275, 280
FatI	CATG	4 cut(s)	11, 217, 262, 278
FauNDI	CATATG	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	190
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	141
Hin1II	CATG	4 cut(s)	15, 221, 266, 282
HinfI	GANTC	2 cut(s)	39, 259
Hpy166II	GTNNAC	3 cut(s)	161, 211, 251
Hpy188I	TCNGA	2 cut(s)	129, 151
Hpy188III	TCNNGA	2 cut(s)	218, 263
Hpy8I	GTNNAC	3 cut(s)	161, 211, 251
HpyAV	CCTTC	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	15, 221, 266, 282
Kzo9I	GATC	1 cut(s)	79
LguI	GCTCTTC	1 cut(s)	179
LpnPI	CCDG	6 cut(s)	60, 86, 113, 194, 269, 296
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	2 cut(s)	61, 196
MfeI	CAATTG	1 cut(s)	121
MluCI	AATT	4 cut(s)	121, 173, 199, 229
MlyI	GAGTC	1 cut(s)	48
MnlI	CCTC	4 cut(s)	128, 285, 297, 310
Mph1103I	ATGCAT	1 cut(s)	90
MslI	CAYNNNNRTG	2 cut(s)	93, 216
MspR9I	CCNGG	2 cut(s)	101, 284
MunI	CAATTG	1 cut(s)	121
MvaI	CCWGG	2 cut(s)	101, 284
MwoI	GCNNNNNNNGC	1 cut(s)	279
NdeI	CATATG	1 cut(s)	84
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	4 cut(s)	15, 221, 266, 282
NlaIV	GGNNCC	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	95
NsiI	ATGCAT	1 cut(s)	90
NspI	RCATGY	2 cut(s)	15, 282
PaeR7I	CTCGAG	1 cut(s)	301
PagI	TCATGA	2 cut(s)	217, 262
PciI	ACATGT	1 cut(s)	11
PciSI	GCTCTTC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	191
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PscI	ACATGT	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	99, 282
PspGI	CCWGG	2 cut(s)	99, 282
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	139
PspXI	VCTCGAGB	1 cut(s)	301
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	2 cut(s)	93, 216
SapI	GCTCTTC	1 cut(s)	179
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	2 cut(s)	101, 284
SetI	ASST	4 cut(s)	67, 120, 183, 319
SfaNI	GCATC	1 cut(s)	211
Sfr274I	CTCGAG	1 cut(s)	301
SlaI	CTCGAG	1 cut(s)	301
SmiMI	CAYNNNNRTG	2 cut(s)	93, 216
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	4 cut(s)	121, 173, 199, 229
SsiI	CCGC	1 cut(s)	190
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	99, 282
TaqI	TCGA	1 cut(s)	302
TasI	AATT	4 cut(s)	121, 173, 199, 229
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	209
XceI	RCATGY	2 cut(s)	15, 282
XhoI	CTCGAG	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	1 cut(s)	225
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.