MD17G1187600.v1.1

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0005661
Physical Location & Seq
Forward (+)
22422779 .. 22425873
3095 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1187600.v1.1.491

Sequence Viewer

Length: 297 bp
ATGAGTGCAGGTGGTGCCTTTGGTGGTAATAGGGGACTGAGCCCAGTTCCTCCGGAGAAAGGTGTCTTTCCTTTGGATCATATGCATTTGTGTGACCTGGAGAAAAAGGAATACCTCAGCTGTCTCAAAACTTCGGGCCACCAATCAGAAAAATGTAGACTCTTCTCAAAAAAGTACCTGGAATGCCGCATGGAAAAGAACTTGATGGCAAAACAAGACATGTCGGAACTTGGATTCGTTAGGGAAAGTAACTCGGATGCTTCTGGAGAGAAGGTTTCCGAGCGGATTGCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CHCH

Protein Analysis

99

Amino Acids

10.9

Weight (kDa)

7.68

Isoelectric Point (pI)

65.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 31 - 65 5.4e-09 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccBSI CCGCTC 1 cut(s) 283
AccI GTMKAC 1 cut(s) 157
AccIII TCCGGA 1 cut(s) 52
AciI CCGC 2 cut(s) 187, 283
AclWI GGATC 1 cut(s) 84
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 219
AjnI CCWGG 2 cut(s) 96, 177
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 84
Aor13HI TCCGGA 1 cut(s) 52
AoxI GGCC 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 44
BbvCI CCTCAGC 1 cut(s) 116
BccI CCATC 1 cut(s) 199
BcgI CGANNNNNNTGC 1 cut(s) 269
BciT130I CCWGG 2 cut(s) 98, 179
BcoDI GTCTC 1 cut(s) 128
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 2 cut(s) 98, 179
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 2 cut(s) 98, 179
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 38
BpmI CTGGAG 2 cut(s) 119, 285
Bpu10I CCTNAGC 1 cut(s) 116
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 44
BseAI TCCGGA 1 cut(s) 52
BseBI CCWGG 2 cut(s) 98, 179
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 2 cut(s) 29, 130
BseNI ACTGG 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 27
BshFI GGCC 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 48
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 44
Bsp13I TCCGGA 1 cut(s) 52
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 2 cut(s) 187, 283
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 30, 129
BspEI TCCGGA 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 14
BsrBI CCGCTC 1 cut(s) 283
BsrI ACTGG 1 cut(s) 44
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 2 cut(s) 98, 179
Bst6I CTCTTC 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 14
BstDEI CTNAG 2 cut(s) 38, 116
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 2 cut(s) 98, 179
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 96, 177
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 175
CviAII CATG 2 cut(s) 190, 220
CviJI RGCY 3 cut(s) 42, 120, 138
CviKI_1 RGCY 3 cut(s) 42, 120, 138
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 38, 116
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 96, 177
EcoT22I ATGCAT 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 2 cut(s) 193, 223
FaiI YATR 4 cut(s) 81, 83, 191, 221
FaqI GGGAC 1 cut(s) 48
FatI CATG 2 cut(s) 189, 219
FauNDI CATATG 1 cut(s) 81
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 187
GluI GCNGC 1 cut(s) 187
GsuI CTGGAG 2 cut(s) 119, 285
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 53
Hin1II CATG 2 cut(s) 193, 223
HinfI GANTC 2 cut(s) 159, 234
HpaII CCGG 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 4 cut(s) 148, 226, 256, 280
Hpy188III TCNNGA 2 cut(s) 53, 264
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 8, 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 2 cut(s) 38, 116
Hsp92II CATG 2 cut(s) 193, 223
Kpn2I TCCGGA 1 cut(s) 52
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 7 cut(s) 57, 66, 83, 110, 164, 191, 249
LweI GCATC 1 cut(s) 247
MaeIII GTNAC 2 cut(s) 92, 248
MalI GATC 1 cut(s) 78
MbiI CCGCTC 1 cut(s) 283
MboI GATC 1 cut(s) 76
MboII GAAGA 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 1 cut(s) 292
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 2 cut(s) 60, 125
Mph1103I ATGCAT 1 cut(s) 87
MroI TCCGGA 1 cut(s) 52
MslI CAYNNNNRTG 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 98, 179
Mva1269I GAATGC 1 cut(s) 188
MvaI CCWGG 2 cut(s) 98, 179
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeI CATATG 1 cut(s) 81
NdeII GATC 1 cut(s) 76
NlaIII CATG 2 cut(s) 193, 223
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 87
NspI RCATGY 1 cut(s) 223
PciI ACATGT 1 cut(s) 219
PctI GAATGC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 234
PkrI GCNGC 1 cut(s) 188
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PscI ACATGT 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 96, 177
PspGI CCWGG 2 cut(s) 96, 177
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 120
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 90
SatI GCNGC 1 cut(s) 187
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 2 cut(s) 98, 179
SduI GDGCHC 1 cut(s) 44
SetI ASST 7 cut(s) 13, 64, 99, 117, 122, 180, 276
SfaNI GCATC 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 1 cut(s) 292
SsiI CCGC 2 cut(s) 187, 283
StyD4I CCNGG 2 cut(s) 96, 177
TasI AATT 1 cut(s) 292
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 1 cut(s) 234
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
XceI RCATGY 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 157
Zsp2I ATGCAT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.