Rroxscaffold_1G00070570

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005661
Physical Location & Seq
Forward (+)
91491426 .. 91495497
4072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00070570.1

Sequence Viewer

Length: 393 bp
ATGTCAAACTCGATACTGTGCACCAAATTGAAAAGCTTGACTGCTAGTGAAGGTGGTGCCTTTGGTGGTAATAGGGGAGTCAGTCTAGTTCCTTCAGAGAAAGGTGTCTTTCCTTTGGATCATATGTATTTGTGTGACCAGGCGAAAAGGGAATACCTCAATTGTCTGAAAACTTTGGGCCACCAATCTGAAAAGTGTAGACACTTCTCAAAATTGTACCTGGAGTGCCGCATGGAAAAAACTAGCGATAAGCACACAGATTACATGTATGGTGTCACCAAGGTTCTTGGAATAAATGTCTTCTGGGCATTTTCGATATACTTGGAGACAGTCGCAATTATTCCACAATTAGTTTTGCTCCAACGAAGTGGACATGTGGACAATTTGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CHCH

Protein Analysis

130

Amino Acids

14.64

Weight (kDa)

8.6

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ER_lumen_recept PF00810 98 - 130 4.9e-10 ER lumen protein retaining receptor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 199
AciI CCGC 1 cut(s) 229
AclWI GGATC 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 1 cut(s) 218
AflIII ACRYGT 2 cut(s) 264, 373
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 2 cut(s) 138, 219
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 320
Alw44I GTGCAC 1 cut(s) 19
AlwI GGATC 1 cut(s) 126
AoxI GGCC 1 cut(s) 178
ApaLI GTGCAC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 23
BciT130I CCWGG 2 cut(s) 140, 221
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 3 cut(s) 45, 86, 243
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
Bme1390I CCNGG 2 cut(s) 140, 221
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 2 cut(s) 140, 221
BpiI GAAGAC 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 279
BseBI CCWGG 2 cut(s) 140, 221
BseDI CCNNGG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 23
BshFI GGCC 1 cut(s) 180
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 320
BsnI GGCC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 2 cut(s) 140, 221
Bst4CI ACNGT 2 cut(s) 18, 331
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 1 cut(s) 118
BstNI CCWGG 2 cut(s) 140, 221
BstNSI RCATGY 2 cut(s) 268, 377
BstSCI CCNGG 2 cut(s) 138, 219
BstSLI GKGCMC 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 292
BstXI CCANNNNNNTGG 1 cut(s) 368
BsuRI GGCC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 217
CviAII CATG 3 cut(s) 232, 265, 374
CviJI RGCY 2 cut(s) 36, 180
CviKI_1 RGCY 2 cut(s) 36, 180
CviQI GTAC 1 cut(s) 217
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 279
Eco57I CTGAAG 1 cut(s) 78
EcoRII CCWGG 2 cut(s) 138, 219
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 3 cut(s) 235, 268, 377
FaiI YATR 8 cut(s) 123, 125, 233, 266, 270, 319, 375, 391
FatI CATG 3 cut(s) 231, 264, 373
FauNDI CATATG 1 cut(s) 123
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 229
FspBI CTAG 3 cut(s) 45, 86, 243
GluI GCNGC 1 cut(s) 229
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 1 cut(s) 180
Hin1II CATG 3 cut(s) 235, 268, 377
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 1 cut(s) 78
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 4 cut(s) 21, 200, 371, 379
Hpy188I TCNGA 3 cut(s) 97, 168, 190
Hpy8I GTNNAC 4 cut(s) 21, 200, 371, 379
HpyAV CCTTC 2 cut(s) 44, 102
HpyCH4III ACNGT 2 cut(s) 18, 331
HpyCH4V TGCA 1 cut(s) 21
Hsp92II CATG 3 cut(s) 235, 268, 377
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 363
LpnPI CCDG 5 cut(s) 125, 152, 206, 233, 289
MaeI CTAG 3 cut(s) 45, 86, 243
MaeIII GTNAC 2 cut(s) 134, 274
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 292
MfeI CAATTG 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 6 cut(s) 26, 160, 212, 336, 347, 382
MlyI GAGTC 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 1 cut(s) 167
MspR9I CCNGG 2 cut(s) 140, 221
MunI CAATTG 1 cut(s) 160
MvaI CCWGG 2 cut(s) 140, 221
NdeI CATATG 1 cut(s) 123
NdeII GATC 1 cut(s) 118
NlaIII CATG 3 cut(s) 235, 268, 377
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 2 cut(s) 134, 274
NspI RCATGY 2 cut(s) 268, 377
PciI ACATGT 2 cut(s) 264, 373
PkrI GCNGC 1 cut(s) 230
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PscI ACATGT 2 cut(s) 264, 373
Psp6I CCWGG 2 cut(s) 138, 219
PspGI CCWGG 2 cut(s) 138, 219
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 178
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 1 cut(s) 87
ScrFI CCNGG 2 cut(s) 140, 221
SduI GDGCHC 1 cut(s) 23
SetI ASST 6 cut(s) 38, 55, 106, 159, 222, 285
Sse9I AATT 6 cut(s) 26, 160, 212, 336, 347, 382
SsiI CCGC 1 cut(s) 229
SspMI CTAG 3 cut(s) 45, 86, 243
StyD4I CCNGG 2 cut(s) 138, 219
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 18, 331
TaqI TCGA 2 cut(s) 11, 314
TasI AATT 6 cut(s) 26, 160, 212, 336, 347, 382
TauI GCSGC 1 cut(s) 231
TseFI GTSAC 2 cut(s) 134, 274
Tsp45I GTSAC 2 cut(s) 134, 274
VneI GTGCAC 1 cut(s) 19
XceI RCATGY 2 cut(s) 268, 377
XmiI GTMKAC 1 cut(s) 199
XspI CTAG 3 cut(s) 45, 86, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.