MD09G1206900.v1.1

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0005661
Physical Location & Seq
Forward (+)
19831817 .. 19834292
2476 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1206900.v1.1.491

Sequence Viewer

Length: 306 bp
ATGAGTGCAGGTGGTGCTTTTGGTGGTAATAGAGGGCTGAGCCCAGTTCCTCCAGAGAAAGGTGTCTTCCCCTTGGATCGTATGCATTTGTGTGACCTGTGGGAAAAGGCTTTGTTGTTGTTCTTTGTGCTGCTGGAAGTTCTTAGTTCCTTGGCTTTATTACAGGAGAAAAAAAAATGCCTCAGTTGCCTCAAAACTTCGGGCCACCAATCTGAAAAATGTAGGCTCTTCTCTAAAATGTACCTGGAATGCCAAATGGAAAAGAACTTGATGGAAACAAGACATGTCAGAACTTGGATTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CHCH

Protein Analysis

102

Amino Acids

11.5

Weight (kDa)

8.82

Isoelectric Point (pI)

65.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 55 - 87 5.8e-06 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 84
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 283
AjnI CCWGG 1 cut(s) 243
AlwI GGATC 1 cut(s) 84
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 117
BccI CCATC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 245
BisI GCNGC 1 cut(s) 131
BlpI GCTNAGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 36
Bpu1102I GCTNAGC 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 72, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 2 cut(s) 72, 150
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 2 cut(s) 29, 196
BseNI ACTGG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 117
BsgI GTGCAG 1 cut(s) 27
BshFI GGCC 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 59
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 76
Bsp1720I GCTNAGC 1 cut(s) 38
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 2 cut(s) 30, 195
BspPI GGATC 1 cut(s) 84
BspQI GCTCTTC 1 cut(s) 233
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 72, 150
BssMI GATC 1 cut(s) 76
BssT1I CCWWGG 2 cut(s) 72, 150
Bst2UI CCWGG 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 233
BstAPI GCANNNNNTGC 1 cut(s) 14
BstDEI CTNAG 3 cut(s) 38, 143, 182
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 2 cut(s) 14, 186
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 117
BstV2I GAAGAC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 284
CviJI RGCY 6 cut(s) 37, 42, 110, 155, 204, 226
CviKI_1 RGCY 6 cut(s) 37, 42, 110, 155, 204, 226
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 3 cut(s) 38, 143, 182
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco130I CCWWGG 2 cut(s) 72, 150
Eco24I GRGCYC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 2 cut(s) 72, 150
EcoT22I ATGCAT 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 2 cut(s) 72, 150
FaeI CATG 1 cut(s) 287
FaiI YATR 2 cut(s) 83, 285
FatI CATG 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 131
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 131
GluI GCNGC 1 cut(s) 131
GsuI CTGGAG 1 cut(s) 36
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 1 cut(s) 287
Hpy188I TCNGA 2 cut(s) 214, 290
Hpy188III TCNNGA 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 8, 85
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 186
HpyF3I CTNAG 3 cut(s) 38, 143, 182
Hsp92II CATG 1 cut(s) 287
Kzo9I GATC 1 cut(s) 76
LguI GCTCTTC 1 cut(s) 233
LpnPI CCDG 7 cut(s) 57, 66, 110, 119, 149, 230, 257
Lsp1109I GCAGC 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 2 cut(s) 58, 220
MhlI GDGCHC 1 cut(s) 44
MnlI CCTC 4 cut(s) 26, 60, 191, 200
Mph1103I ATGCAT 1 cut(s) 87
MseI TTAA 1 cut(s) 304
MslI CAYNNNNRTG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 14, 186
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 87
NspI RCATGY 1 cut(s) 287
PciI ACATGT 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 233
PctI GAATGC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 132
PscI ACATGT 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspPI GGNCC 1 cut(s) 202
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 304
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 44
SetI ASST 4 cut(s) 13, 64, 99, 246
SmiMI CAYNNNNRTG 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 2 cut(s) 72, 150
Tru1I TTAA 1 cut(s) 304
Tru9I TTAA 1 cut(s) 304
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 92
XceI RCATGY 1 cut(s) 287
Zsp2I ATGCAT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.