Rroxscaffold_2G00105340

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005661
Physical Location & Seq
Forward (+)
28775723 .. 28777322
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00105340.1

Sequence Viewer

Length: 306 bp
ATGTTGTCGTTTCTTGTAGGTGGTGCCTTTGGTGGTAATAGGGGAGTCAGTCCAGTTCCTCCAGAGAAAGGTGTCTTCCCTTTGGATCATATGCATTTGTGTGACCAGGCGAAAAGGGAATACCTCAATTGTCTGAAAACTTCGGGCCACCAATCTGAAAAGTGCAGACACTTCTCAAAATTGTACCTGGAGTGCCGCATGGAAAAGAACTTGATGGCAAAGCAAGACATGTCAGAACTTGGATTTGTAAAGGAAAATGGTAAAGAAGCTTCTGAAGAGAAGATTACTGAGAGGATCGGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CHCH

Protein Analysis

101

Amino Acids

11.39

Weight (kDa)

7.7

Isoelectric Point (pI)

58.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 34 - 68 5.1e-07 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AciI CCGC 1 cut(s) 196
AclWI GGATC 2 cut(s) 93, 302
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 228
AjnI CCWGG 2 cut(s) 105, 186
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
AlwI GGATC 2 cut(s) 93, 302
AoxI GGCC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 145
BanI GGYRCC 1 cut(s) 23
BarI GAAGNNNNNNTAC 2 cut(s) 253, 285
BbsI GAAGAC 1 cut(s) 67
BccI CCATC 1 cut(s) 208
BciT130I CCWGG 2 cut(s) 107, 188
BfaI CTAG 1 cut(s) 304
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bme1390I CCNGG 2 cut(s) 107, 188
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 2 cut(s) 107, 188
BpiI GAAGAC 1 cut(s) 67
BpmI CTGGAG 2 cut(s) 45, 209
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 53
BseBI CCWGG 2 cut(s) 107, 188
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 184
BshFI GGCC 1 cut(s) 147
BshNI GGYRCC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 68
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 85, 294
BspACI CCGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 25
BspPI GGATC 2 cut(s) 93, 302
BspT107I GGYRCC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 53
BssMI GATC 2 cut(s) 85, 294
Bst2UI CCWGG 2 cut(s) 107, 188
Bst6I CTCTTC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 288
BstKTI GATC 2 cut(s) 88, 297
BstMBI GATC 2 cut(s) 85, 294
BstNI CCWGG 2 cut(s) 107, 188
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 2 cut(s) 105, 186
BstV2I GAAGAC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 184
CviAII CATG 2 cut(s) 199, 229
CviJI RGCY 2 cut(s) 147, 269
CviKI_1 RGCY 2 cut(s) 147, 269
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 288
DpnI GATC 2 cut(s) 87, 296
DpnII GATC 2 cut(s) 85, 294
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 294
EcoRII CCWGG 2 cut(s) 105, 186
EcoT22I ATGCAT 1 cut(s) 96
FaeI CATG 2 cut(s) 202, 232
FaiI YATR 4 cut(s) 90, 92, 200, 230
FatI CATG 2 cut(s) 198, 228
FauNDI CATATG 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 1 cut(s) 304
GluI GCNGC 1 cut(s) 196
GsuI CTGGAG 2 cut(s) 45, 209
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 2 cut(s) 202, 232
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 1 cut(s) 45
Hpy188I TCNGA 4 cut(s) 135, 157, 235, 274
Hpy188III TCNNGA 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 94, 165
HpyF3I CTNAG 1 cut(s) 288
Hsp92II CATG 2 cut(s) 202, 232
Kzo9I GATC 2 cut(s) 85, 294
LpnPI CCDG 6 cut(s) 66, 75, 92, 119, 173, 200
MaeI CTAG 1 cut(s) 304
MaeIII GTNAC 2 cut(s) 101, 299
MalI GATC 2 cut(s) 87, 296
MboI GATC 2 cut(s) 85, 294
MboII GAAGA 3 cut(s) 67, 287, 292
MfeI CAATTG 1 cut(s) 127
MluCI AATT 2 cut(s) 127, 179
MlyI GAGTC 1 cut(s) 54
MnlI CCTC 3 cut(s) 69, 134, 285
Mph1103I ATGCAT 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 99
MspR9I CCNGG 2 cut(s) 107, 188
MunI CAATTG 1 cut(s) 127
MvaI CCWGG 2 cut(s) 107, 188
NdeI CATATG 1 cut(s) 90
NdeII GATC 2 cut(s) 85, 294
NlaIII CATG 2 cut(s) 202, 232
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 96
NspI RCATGY 1 cut(s) 232
PciI ACATGT 1 cut(s) 228
PkrI GCNGC 1 cut(s) 197
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PscI ACATGT 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 105, 186
PspGI CCWGG 2 cut(s) 105, 186
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 145
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 99
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 2 cut(s) 85, 294
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 2 cut(s) 107, 188
SetI ASST 5 cut(s) 22, 73, 126, 189, 271
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 2 cut(s) 127, 179
SsiI CCGC 1 cut(s) 196
SspMI CTAG 1 cut(s) 304
StyD4I CCNGG 2 cut(s) 105, 186
TasI AATT 2 cut(s) 127, 179
TauI GCSGC 1 cut(s) 198
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
XceI RCATGY 1 cut(s) 232
XspI CTAG 1 cut(s) 304
Zsp2I ATGCAT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.