Rh5AG293100

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005661
Physical Location & Seq
Reverse (-)
40572405 .. 40575211
2807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG293100.1

Sequence Viewer

Length: 279 bp
ATGTTGTTGTTTCTTGTAGGTGGTGCCATTGGTGGTAATAGGGGAGTCAGTCCAGTTCCTTCAAAGAAAGGTGTCTTCCCTTTGGATCATATGCATTTGTGTGACCAGGCAGAAAGGGAATACCTCAATTGTCTGAAAACTTCGGGCCACCAATCTGAAAAATGTAGACACTTCTCAAAATTGTACCTGAAGTGCCGCATGGAAAATAAGTGGATCGGATTTGCTTTATGTGTGCTTTTTGGAGCTGAAGAAAACCCAGGTGTCCTCAGAAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CHCH

Protein Analysis

92

Amino Acids

10.32

Weight (kDa)

9.14

Isoelectric Point (pI)

53.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 39 - 68 4.6e-06 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccI GTMKAC 1 cut(s) 166
AciI CCGC 1 cut(s) 196
AclWI GGATC 2 cut(s) 93, 221
AcuI CTGAAG 2 cut(s) 209, 267
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 1 cut(s) 63
AjnI CCWGG 2 cut(s) 105, 256
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
AlwI GGATC 2 cut(s) 93, 221
AoxI GGCC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 145
BanI GGYRCC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 107, 258
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bme1390I CCNGG 2 cut(s) 107, 258
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 2 cut(s) 107, 258
BpiI GAAGAC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 53
BseBI CCWGG 2 cut(s) 107, 258
BseDI CCNNGG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 53
BshFI GGCC 1 cut(s) 147
BshNI GGYRCC 1 cut(s) 23
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 3 cut(s) 85, 213, 272
BspACI CCGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 279
BspHI TCATGA 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 25
BspPI GGATC 2 cut(s) 93, 221
BspT107I GGYRCC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 3 cut(s) 85, 213, 272
Bst2UI CCWGG 2 cut(s) 107, 258
BstDEI CTNAG 1 cut(s) 266
BstKTI GATC 3 cut(s) 88, 216, 275
BstMBI GATC 3 cut(s) 85, 213, 272
BstNI CCWGG 2 cut(s) 107, 258
BstSCI CCNGG 2 cut(s) 105, 256
BstV2I GAAGAC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 147
CciI TCATGA 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 184
CviAII CATG 2 cut(s) 199, 276
CviJI RGCY 2 cut(s) 147, 245
CviKI_1 RGCY 2 cut(s) 147, 245
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 266
DpnI GATC 3 cut(s) 87, 215, 274
DpnII GATC 3 cut(s) 85, 213, 272
Eco57I CTGAAG 2 cut(s) 209, 267
EcoRII CCWGG 2 cut(s) 105, 256
EcoT22I ATGCAT 1 cut(s) 96
FaeI CATG 2 cut(s) 202, 279
FaiI YATR 5 cut(s) 90, 92, 200, 229, 277
FatI CATG 2 cut(s) 198, 275
FauNDI CATATG 1 cut(s) 90
FblI GTMKAC 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 196
GluI GCNGC 1 cut(s) 196
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 2 cut(s) 202, 279
HinfI GANTC 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 4 cut(s) 135, 157, 218, 269
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 266
Hsp92II CATG 2 cut(s) 202, 279
Kzo9I GATC 3 cut(s) 85, 213, 272
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 6 cut(s) 66, 92, 119, 200, 243, 270
MaeIII GTNAC 1 cut(s) 101
MalI GATC 3 cut(s) 87, 215, 274
MboI GATC 3 cut(s) 85, 213, 272
MboII GAAGA 2 cut(s) 67, 260
MfeI CAATTG 1 cut(s) 127
MluCI AATT 2 cut(s) 127, 179
MlyI GAGTC 1 cut(s) 54
MnlI CCTC 2 cut(s) 134, 275
Mph1103I ATGCAT 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 99
MspR9I CCNGG 2 cut(s) 107, 258
MunI CAATTG 1 cut(s) 127
MvaI CCWGG 2 cut(s) 107, 258
NdeI CATATG 1 cut(s) 90
NdeII GATC 3 cut(s) 85, 213, 272
NlaIII CATG 2 cut(s) 202, 279
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 96
PagI TCATGA 1 cut(s) 275
PkrI GCNGC 1 cut(s) 197
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 105, 256
PspGI CCWGG 2 cut(s) 105, 256
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 145
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 99
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 3 cut(s) 85, 213, 272
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 2 cut(s) 107, 258
SetI ASST 6 cut(s) 22, 73, 126, 189, 247, 262
SgeI CNNG 9 cut(s) 26, 65, 118, 119, 156, 199, 211, 269, 270
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 2 cut(s) 127, 179
SsiI CCGC 1 cut(s) 196
StyD4I CCNGG 2 cut(s) 105, 256
TasI AATT 2 cut(s) 127, 179
TauI GCSGC 1 cut(s) 198
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 166
Zsp2I ATGCAT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.