RchiOBHm_Chr2g0139621

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005661
Physical Location & Seq
Reverse (-)
57158166 .. 57160865
2700 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51015

Sequence Viewer

Length: 297 bp
ATGAGCGCAGGTGGTGCCTTTGGCGGTAATAGGGGAGTCAGTCCAGTTCCTCCAGAGAAAGGTGTCTTCCCTTTGGATCATATGCATTTGTGTGACCAGGCGAAAAGGGAATACCTCAATTGTCTGAAAACTTCGGGCCACCAATCTGAAAAGTGCAGACAATTCTCAAAATTGTACCTGGAGTGCCGCATGGAAAAGAACTTGATGGCAAAGCAAGACATGTCAGAACTTGGATTTGTAAAGGAAAATGGTAAAGAAGCTTCTGAAGAGAGGATTACTGAGAGGATCGGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CHCH

Protein Analysis

98

Amino Acids

11.01

Weight (kDa)

7.68

Isoelectric Point (pI)

66.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 31 - 65 3.3e-06 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AciI CCGC 2 cut(s) 24, 187
AclWI GGATC 2 cut(s) 84, 293
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 219
AjnI CCWGG 2 cut(s) 96, 177
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
AlwI GGATC 2 cut(s) 84, 293
AoxI GGCC 1 cut(s) 136
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 14
BarI GAAGNNNNNNTAC 2 cut(s) 244, 276
BbsI GAAGAC 1 cut(s) 58
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 2 cut(s) 98, 179
BfaI CTAG 1 cut(s) 295
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 2 cut(s) 98, 179
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 2 cut(s) 98, 179
BpiI GAAGAC 1 cut(s) 58
BpmI CTGGAG 2 cut(s) 36, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 44
BseBI CCWGG 2 cut(s) 98, 179
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 175
BshFI GGCC 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 59
BsnI GGCC 1 cut(s) 138
Bsp143I GATC 2 cut(s) 76, 285
BspACI CCGC 2 cut(s) 24, 187
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 2 cut(s) 84, 293
BspT107I GGYRCC 1 cut(s) 14
BsrI ACTGG 1 cut(s) 44
BssMI GATC 2 cut(s) 76, 285
Bst2UI CCWGG 2 cut(s) 98, 179
Bst6I CTCTTC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 279
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 2 cut(s) 79, 288
BstMBI GATC 2 cut(s) 76, 285
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 2 cut(s) 98, 179
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 96, 177
BstV2I GAAGAC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 138
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 175
CviAII CATG 2 cut(s) 190, 220
CviJI RGCY 2 cut(s) 138, 260
CviKI_1 RGCY 2 cut(s) 138, 260
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 279
DpnI GATC 2 cut(s) 78, 287
DpnII GATC 2 cut(s) 76, 285
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 285
EcoRII CCWGG 2 cut(s) 96, 177
EcoT22I ATGCAT 1 cut(s) 87
FaeI CATG 2 cut(s) 193, 223
FaiI YATR 4 cut(s) 81, 83, 191, 221
FatI CATG 2 cut(s) 189, 219
FauNDI CATATG 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 187
FspBI CTAG 1 cut(s) 295
GlaI GCGC 1 cut(s) 7
GluI GCNGC 1 cut(s) 187
GsuI CTGGAG 2 cut(s) 36, 200
HaeIII GGCC 1 cut(s) 138
HhaI GCGC 1 cut(s) 8
Hin1II CATG 2 cut(s) 193, 223
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 1 cut(s) 36
Hpy188I TCNGA 4 cut(s) 126, 148, 226, 265
Hpy188III TCNNGA 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 85, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 279
Hsp92II CATG 2 cut(s) 193, 223
HspAI GCGC 1 cut(s) 6
Kzo9I GATC 2 cut(s) 76, 285
LpnPI CCDG 6 cut(s) 57, 66, 83, 110, 164, 191
MaeI CTAG 1 cut(s) 295
MaeIII GTNAC 2 cut(s) 92, 290
MalI GATC 2 cut(s) 78, 287
MboI GATC 2 cut(s) 76, 285
MboII GAAGA 2 cut(s) 58, 278
MfeI CAATTG 1 cut(s) 118
MluCI AATT 3 cut(s) 118, 161, 170
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 4 cut(s) 60, 125, 264, 276
Mph1103I ATGCAT 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 90
MspR9I CCNGG 2 cut(s) 98, 179
MunI CAATTG 1 cut(s) 118
MvaI CCWGG 2 cut(s) 98, 179
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeI CATATG 1 cut(s) 81
NdeII GATC 2 cut(s) 76, 285
NlaIII CATG 2 cut(s) 193, 223
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 87
NspI RCATGY 1 cut(s) 223
PciI ACATGT 1 cut(s) 219
PkrI GCNGC 1 cut(s) 188
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PscI ACATGT 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 96, 177
PspGI CCWGG 2 cut(s) 96, 177
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 136
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 90
SatI GCNGC 1 cut(s) 187
Sau3AI GATC 2 cut(s) 76, 285
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 2 cut(s) 98, 179
SetI ASST 5 cut(s) 13, 64, 117, 180, 262
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 3 cut(s) 118, 161, 170
SsiI CCGC 2 cut(s) 24, 187
SspMI CTAG 1 cut(s) 295
StyD4I CCNGG 2 cut(s) 96, 177
TasI AATT 3 cut(s) 118, 161, 170
TauI GCSGC 1 cut(s) 189
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
XceI RCATGY 1 cut(s) 223
XspI CTAG 1 cut(s) 295
Zsp2I ATGCAT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.