pycom09g12330

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0005661
Physical Location & Seq
Forward (+)
10846942 .. 10848918
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g12330.4

Sequence Viewer

Length: 297 bp
ATGAGTGCAGGTGGTGCTTTTGGTGGTAATAGAGGGTTGAGCCCAGTTCCTCCGGAGAAAGGTGTCTTCCCTTTGGATCATATGCATTTGTGTGACCTGGAGAAAAAAGAATACCTCAGTTGCCTCAAAACTTCAGGCCACCAATCTGAAAAATGTAGGCTCTTCTCTAAAAAGTACCTGGAATGCCGAATGGAAAAGAACTTGATGGCAAAACAAGACATGTCAGAACTTGGATTTGTTAAGGAAGGTAACTCGGACGCTTCTGGAGAGAAGGTTTCCGAGCGGATTGCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CHCH

Protein Analysis

99

Amino Acids

10.84

Weight (kDa)

7.67

Isoelectric Point (pI)

61.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 283
AccIII TCCGGA 1 cut(s) 52
AciI CCGC 1 cut(s) 283
AclWI GGATC 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 219
AjnI CCWGG 2 cut(s) 96, 177
AlwI GGATC 1 cut(s) 84
Aor13HI TCCGGA 1 cut(s) 52
AoxI GGCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 58
BccI CCATC 1 cut(s) 199
BcgI CGANNNNNNTGC 1 cut(s) 269
BciT130I CCWGG 2 cut(s) 98, 179
Bme1390I CCNGG 2 cut(s) 98, 179
BmrFI CCNGG 2 cut(s) 98, 179
BmrI ACTGGG 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 58
BpmI CTGGAG 2 cut(s) 119, 285
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 44
BseAI TCCGGA 1 cut(s) 52
BseBI CCWGG 2 cut(s) 98, 179
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 27
BshFI GGCC 1 cut(s) 138
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 59
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 44
Bsp13I TCCGGA 1 cut(s) 52
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 1 cut(s) 283
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 129
BspEI TCCGGA 1 cut(s) 52
BspPI GGATC 1 cut(s) 84
BspQI GCTCTTC 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 283
BsrI ACTGG 1 cut(s) 44
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 2 cut(s) 98, 179
Bst6I CTCTTC 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 116
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 2 cut(s) 98, 179
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 96, 177
BstV2I GAAGAC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 138
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 175
CviAII CATG 1 cut(s) 220
CviJI RGCY 3 cut(s) 42, 138, 160
CviKI_1 RGCY 3 cut(s) 42, 138, 160
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 117
EcoRII CCWGG 2 cut(s) 96, 177
EcoT22I ATGCAT 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 1 cut(s) 223
FaiI YATR 3 cut(s) 81, 83, 221
FatI CATG 1 cut(s) 219
FauNDI CATATG 1 cut(s) 81
FriOI GRGCYC 1 cut(s) 44
GsuI CTGGAG 2 cut(s) 119, 285
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 53
HgaI GACGC 1 cut(s) 266
Hin1II CATG 1 cut(s) 223
HpaII CCGG 1 cut(s) 53
Hpy188I TCNGA 4 cut(s) 148, 226, 256, 280
Hpy188III TCNNGA 2 cut(s) 53, 264
HpyAV CCTTC 2 cut(s) 239, 265
HpyCH4V TGCA 2 cut(s) 8, 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 1 cut(s) 223
Kpn2I TCCGGA 1 cut(s) 52
Kzo9I GATC 1 cut(s) 76
LguI GCTCTTC 1 cut(s) 167
LpnPI CCDG 8 cut(s) 57, 66, 83, 110, 120, 164, 191, 249
MaeIII GTNAC 2 cut(s) 92, 248
MalI GATC 1 cut(s) 78
MbiI CCGCTC 1 cut(s) 283
MboI GATC 1 cut(s) 76
MboII GAAGA 2 cut(s) 58, 154
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 1 cut(s) 292
MnlI CCTC 4 cut(s) 26, 60, 125, 134
Mph1103I ATGCAT 1 cut(s) 87
MroI TCCGGA 1 cut(s) 52
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 90
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 98, 179
Mva1269I GAATGC 1 cut(s) 188
MvaI CCWGG 2 cut(s) 98, 179
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeI CATATG 1 cut(s) 81
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 87
NspI RCATGY 1 cut(s) 223
PciI ACATGT 1 cut(s) 219
PciSI GCTCTTC 1 cut(s) 167
PctI GAATGC 1 cut(s) 188
PscI ACATGT 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 96, 177
PspGI CCWGG 2 cut(s) 96, 177
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 98, 179
SduI GDGCHC 1 cut(s) 44
SetI ASST 7 cut(s) 13, 64, 99, 117, 180, 250, 276
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 1 cut(s) 292
SsiI CCGC 1 cut(s) 283
StyD4I CCNGG 2 cut(s) 96, 177
TasI AATT 1 cut(s) 292
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
XceI RCATGY 1 cut(s) 223
Zsp2I ATGCAT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.