Rroxscaffold_4G00307960

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005661
Physical Location & Seq
Reverse (-)
29471769 .. 29474285
2517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307960.1

Sequence Viewer

Length: 381 bp
ATGAGTGGAAGTAGTAGAAGAGATGCAACAAAGCCATGGATCATGAGGTTCGGGTATGAGCCTATTTTGAGGCTGCTGCAGGCTATCATCATCTGCTATTTACTCATCAATCTGGCAGGTGGTGCCTTTGGTGGTAATAGGGGAGTCAGTCCAGTTCCTTCAGAGAAAGGTGTCTTCCCTTTGGATCATATGCATTTGTGTGACCAGGCAGAAAGGGAATACCTCAATTGTTTGAAAACTTCGGGCCACCAATCTGAAAAATGTAGACACTTCTCAAAATTGTACCTAAAGTGCCGCATGGAAAAGGATAAGTTTGATATCAAAAAGTATAAATCGGCGTGGGATTATAAGCTTTCAAAATCAGCCAGCAGTGGGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CHCH

Protein Analysis

126

Amino Acids

14.35

Weight (kDa)

9.46

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 72 - 101 8.5e-06 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AarI CACCTGC 1 cut(s) 107
Acc36I ACCTGC 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 265
AciI CCGC 1 cut(s) 295
AclWI GGATC 2 cut(s) 47, 192
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 372
AgsI TTSAA 2 cut(s) 235, 357
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 1 cut(s) 352
AluI AGCT 1 cut(s) 352
AlwI GGATC 2 cut(s) 47, 192
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 2 cut(s) 73, 76
AspS9I GGNCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 166
BbvI GCAGC 2 cut(s) 60, 63
BciT130I CCWGG 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 107
BisI GCNGC 3 cut(s) 74, 77, 295
BlsI GCNGC 3 cut(s) 75, 78, 296
Bme1390I CCNGG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse1I ACTGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 60, 63
BshFI GGCC 1 cut(s) 246
BshNI GGYRCC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 372
BsnI GGCC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 39, 184
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 1 cut(s) 295
BspANI GGCC 1 cut(s) 246
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 124
BspMAI CTGCAG 1 cut(s) 81
BspMI ACCTGC 1 cut(s) 107
BspPI GGATC 2 cut(s) 47, 192
BspT107I GGYRCC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 2 cut(s) 39, 184
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 81, 367
BstDSI CCRYGG 1 cut(s) 35
BstKTI GATC 2 cut(s) 42, 187
BstMBI GATC 2 cut(s) 39, 184
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 60, 63
BstV2I GAAGAC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 246
BtgI CCRYGG 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 376
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 2 cut(s) 81, 367
CciI TCATGA 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 283
CviAII CATG 3 cut(s) 36, 43, 298
CviJI RGCY 7 cut(s) 34, 61, 73, 83, 246, 352, 365
CviKI_1 RGCY 7 cut(s) 34, 61, 73, 83, 246, 352, 365
CviQI GTAC 1 cut(s) 283
DpnI GATC 2 cut(s) 41, 186
DpnII GATC 2 cut(s) 39, 184
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 35
Eco32I GATATC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 35
EcoT22I ATGCAT 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 3 cut(s) 39, 46, 301
FaiI YATR 9 cut(s) 37, 44, 57, 189, 191, 299, 330, 348, 379
FatI CATG 3 cut(s) 35, 42, 297
FauNDI CATATG 1 cut(s) 189
FblI GTMKAC 1 cut(s) 265
Fnu4HI GCNGC 3 cut(s) 74, 77, 295
Fsp4HI GCNGC 3 cut(s) 74, 77, 295
GluI GCNGC 3 cut(s) 74, 77, 295
HaeIII GGCC 1 cut(s) 246
Hin1II CATG 3 cut(s) 39, 46, 301
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 2 cut(s) 163, 256
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 168
HpyCH4V TGCA 3 cut(s) 26, 79, 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
Hsp92II CATG 3 cut(s) 39, 46, 301
Kzo9I GATC 2 cut(s) 39, 184
LpnPI CCDG 6 cut(s) 65, 98, 102, 165, 191, 218
Lsp1109I GCAGC 2 cut(s) 60, 63
LweI GCATC 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 41, 186
MboI GATC 2 cut(s) 39, 184
MboII GAAGA 2 cut(s) 30, 166
MfeI CAATTG 1 cut(s) 226
MluCI AATT 2 cut(s) 226, 278
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 3 cut(s) 39, 63, 233
Mph1103I ATGCAT 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 206
MunI CAATTG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 122
NcoI CCATGG 1 cut(s) 35
NdeI CATATG 1 cut(s) 189
NdeII GATC 2 cut(s) 39, 184
NlaIII CATG 3 cut(s) 39, 46, 301
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 195
PagI TCATGA 1 cut(s) 42
PaqCI CACCTGC 1 cut(s) 107
PkrI GCNGC 3 cut(s) 75, 78, 296
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PsiI TTATAA 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 244
PstI CTGCAG 1 cut(s) 81
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 198
SatI GCNGC 3 cut(s) 74, 77, 295
Sau3AI GATC 2 cut(s) 39, 184
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 206
SetI ASST 6 cut(s) 50, 121, 172, 225, 288, 354
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 2 cut(s) 226, 278
SsiI CCGC 1 cut(s) 295
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 35
TasI AATT 2 cut(s) 226, 278
TauI GCSGC 1 cut(s) 297
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 73, 76
Tsp45I GTSAC 1 cut(s) 200
TspRI CASTG 1 cut(s) 376
XmiI GTMKAC 1 cut(s) 265
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.