RchiOBHm_Chr4g0404221

Cytochrome c oxidase assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005661
Physical Location & Seq
Forward (+)
23883368 .. 23883861
494 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37582

Sequence Viewer

Length: 285 bp
ATGGTCCATGTTTCTGTCTTTGATAGTGTTCAATGTTATTTTATGCAAAGAGGGATGAAAACTCAGCTATCAGCCATAACCATGAAATACACATGTGGTGCCTTTGGTGGTAATAGGGGAGTCAGTCTATTTCCTTCAGAGAAAGGTGTCTTCCCATTAGATTATATGCATTTGTGTGACCAGGCGAAAAGGGAATACCTCAATTGTCTGAAAACTTCGGGCCACCAATCTGAAAAGTGTAGACACTTCTCAAAATTGTACCTGGAGTGCCGCATGGAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
CHCH

Protein Analysis

94

Amino Acids

10.86

Weight (kDa)

8.97

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 59 - 93 4.4e-07 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AccI GTMKAC 1 cut(s) 241
AciI CCGC 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 1 cut(s) 32
AjnI CCWGG 2 cut(s) 180, 261
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
AoxI GGCC 1 cut(s) 220
AspS9I GGNCC 2 cut(s) 4, 220
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 142
BciT130I CCWGG 2 cut(s) 182, 263
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
Bme1390I CCNGG 2 cut(s) 182, 263
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 220
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 2 cut(s) 182, 263
BpiI GAAGAC 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 284
BseBI CCWGG 2 cut(s) 182, 263
BseGI GGATG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 77
BshFI GGCC 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 98
BsnI GGCC 1 cut(s) 222
BspACI CCGC 1 cut(s) 271
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 100
BspT107I GGYRCC 1 cut(s) 98
Bst2UI CCWGG 2 cut(s) 182, 263
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 60
BstNI CCWGG 2 cut(s) 182, 263
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 2 cut(s) 180, 261
BstV2I GAAGAC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 1 cut(s) 60
Cfr13I GGNCC 2 cut(s) 4, 220
Csp6I GTAC 1 cut(s) 259
CviAII CATG 4 cut(s) 8, 82, 93, 274
CviJI RGCY 3 cut(s) 67, 74, 222
CviKI_1 RGCY 3 cut(s) 67, 74, 222
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 180, 261
EcoT22I ATGCAT 1 cut(s) 171
FaeI CATG 4 cut(s) 11, 85, 96, 277
FaiI YATR 8 cut(s) 9, 44, 77, 83, 94, 165, 167, 275
FatI CATG 4 cut(s) 7, 81, 92, 273
FblI GTMKAC 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 271
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 271
GluI GCNGC 1 cut(s) 271
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 1 cut(s) 222
Hin1II CATG 4 cut(s) 11, 85, 96, 277
HinfI GANTC 1 cut(s) 120
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 3 cut(s) 139, 210, 232
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 46, 169
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 4 cut(s) 11, 85, 96, 277
LpnPI CCDG 4 cut(s) 167, 194, 248, 275
MaeIII GTNAC 1 cut(s) 176
MboII GAAGA 1 cut(s) 142
MfeI CAATTG 1 cut(s) 202
MluCI AATT 2 cut(s) 202, 254
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 2 cut(s) 44, 209
Mph1103I ATGCAT 1 cut(s) 171
MslI CAYNNNNRTG 2 cut(s) 80, 174
MspR9I CCNGG 2 cut(s) 182, 263
MunI CAATTG 1 cut(s) 202
MvaI CCWGG 2 cut(s) 182, 263
NlaIII CATG 4 cut(s) 11, 85, 96, 277
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 176
NsiI ATGCAT 1 cut(s) 171
NspI RCATGY 1 cut(s) 96
PciI ACATGT 1 cut(s) 92
PkrI GCNGC 1 cut(s) 272
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PscI ACATGT 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 180, 261
PspGI CCWGG 2 cut(s) 180, 261
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 2 cut(s) 4, 220
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 2 cut(s) 80, 174
SatI GCNGC 1 cut(s) 271
Sau96I GGNCC 2 cut(s) 4, 220
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 2 cut(s) 182, 263
SetI ASST 4 cut(s) 69, 148, 201, 264
SgeI CNNG 8 cut(s) 20, 94, 105, 193, 194, 231, 274, 275
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 2 cut(s) 80, 174
Sse9I AATT 2 cut(s) 202, 254
SsiI CCGC 1 cut(s) 271
StyD4I CCNGG 2 cut(s) 180, 261
TasI AATT 2 cut(s) 202, 254
TauI GCSGC 1 cut(s) 273
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 71, 98
VpaK11BI GGWCC 1 cut(s) 4
XceI RCATGY 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 241
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.