Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003994

Physical Location & Seq

Genomic Coordinates Reverse (-)

26293588 .. 26295922

Gene Structure 2335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69840.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGTCAAGCTTTGGGTTGTATTCAAGTTGATCAGTCGAATGTAGCAATCAAAGAGACTTTTGGGAAATTCGACGAAGTTCTTGAGCCGGGTTGTCACTGTTTGCCATGGTGTTTGGGAAGTCAAGTCGCTGGTCACCTTTCTTTACGTGTTCAACAGCTCGATGTTCGCTGCGAGACAAAGACTAAGGATAATGTGTTTGTCACGGTTGTTGCTTCCATTCAATACCGTGCCTTAGCGGAGAGTGCTCAAGATGCTTTTTACAAGCTCAGCAACACGAGGAATCAGATTCAAGCTTATGTCTTTGATGTGATCCGAGCAAGTGTACCTAAGCTGGATCTAGACTCTACCTTTGAGCAAAAGAATGACATTGCAAAAACCGTTGAGACTGAGCTCGAAAAGGCTATGTCGCATTACGGGTATGAGATTGTTCAGACACTGATTGTGGATATCGAGCCTGATGTGCACGTCAAGAGGGCAATGAATGAGATCAATGCTGCTTCTAGAATGAGAGAGGCAGCGAGTGAGAAAGCTGAGGCAGAGAAGATTCTGCAGATCAAGCGTGCTGAGGGAGAAGCTGAATCGAAATACCTTTCAGGTATGGGTATAGCCCGTCAGAGACAAGCCATTGTGGACGGTCTGAGAAACAGCGTCCTCGCCTTCTCCGAGTCTGTTCCAGGAACATCTTCCAAAGACGTGATGGATATGGTTCTTGTGACTCAGTACTTTGACACATTGAAGGAAATTGGTGCTTCTTCGAAGTCAAACTCGGTGTTCATACCGCACGGTCCAGGCGCTGTTAGGGACATTGCTTCACAGATCAGGGATGGTCTTCTTCAGGGTAACTCTGCTGCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

286

Amino Acids

31.41

Weight (kDa)

5.3

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	9 - 182	3.8e-28	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840
fragaria_vesca	FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920
malus_domestica	MD13G1078800.v1.1 MD16G1078400.v1.1
prunus_persica	Prupe.1G268100_v2.0.a1 Prupe.1G268100_v2.0.a1 Prupe.1G268100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0440581
rosa_laevigata	RLG00000006166 RLG00000031225 RLG00000034776
rosa_multiflora	Rmu_sc0008018.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381410
rosa_rugosa	Rorug04G0326800
rosa_samantha	Rh4AG378700 Rh4BG391300 Rh4DG385200 Rh5DG546200
rosa_wichuraiana	Rw4G032520 Rw4G032560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	239, 782
AclWI	GGATC	2 cut(s)	307, 345
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	821
AfaI	GTAC	2 cut(s)	327, 725
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	5 cut(s)	26, 155, 224, 293, 739
AjiI	CACGTC	2 cut(s)	469, 697
AjnI	CCWGG	2 cut(s)	676, 790
AluBI	AGCT	8 cut(s)	11, 160, 268, 296, 334, 394, 533, 578
AluI	AGCT	8 cut(s)	11, 160, 268, 296, 334, 394, 533, 578
Alw21I	GWGCWC	3 cut(s)	250, 396, 468
Alw26I	GTCTC	4 cut(s)	50, 170, 380, 613
Alw44I	GTGCAC	1 cut(s)	464
AlwI	GGATC	2 cut(s)	307, 345
AlwNI	CAGNNNCTG	2 cut(s)	439, 797
ApaLI	GTGCAC	1 cut(s)	464
ApeKI	GCWGC	4 cut(s)	171, 497, 518, 851
ApoI	RAATTY	1 cut(s)	68
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
Asp700I	GAANNNNTTC	1 cut(s)	685
AspLEI	GCGC	1 cut(s)	797
AspS9I	GGNCC	1 cut(s)	788
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	128
AsuII	TTCGAA	1 cut(s)	758
AvaII	GGWCC	1 cut(s)	788
BaeGI	GKGCMC	1 cut(s)	468
BanII	GRGCYC	1 cut(s)	396
BauI	CACGAG	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	824
Bbv12I	GWGCWC	3 cut(s)	250, 396, 468
BbvCI	CCTCAGC	2 cut(s)	534, 567
BbvI	GCAGC	4 cut(s)	158, 484, 530, 838
BccI	CCATC	2 cut(s)	694, 821
BciT130I	CCWGG	2 cut(s)	678, 792
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	4 cut(s)	50, 170, 380, 613
BfaI	CTAG	2 cut(s)	341, 504
BfmI	CTRYAG	1 cut(s)	551
BfoI	RGCGCY	1 cut(s)	798
BisI	GCNGC	4 cut(s)	172, 498, 519, 852
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	4 cut(s)	173, 499, 520, 853
BmcAI	AGTACT	1 cut(s)	725
Bme1390I	CCNGG	3 cut(s)	90, 678, 792
Bme18I	GGWCC	1 cut(s)	788
BmgBI	CACGTC	2 cut(s)	469, 697
BmgT120I	GGNCC	1 cut(s)	788
BmrFI	CCNGG	3 cut(s)	90, 678, 792
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	824
Bpu10I	CCTNAGC	4 cut(s)	235, 330, 534, 567
Bpu1102I	GCTNAGC	1 cut(s)	269
Bpu14I	TTCGAA	1 cut(s)	758
BpuEI	CTTGAG	2 cut(s)	104, 234
BpuMI	CCSGG	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	107
Bse3DI	GCAATG	3 cut(s)	369, 486, 807
BseBI	CCWGG	2 cut(s)	678, 792
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	832
BseMI	GCAATG	3 cut(s)	369, 486, 807
BseMII	CTCAG	7 cut(s)	283, 381, 525, 558, 632, 734, 846
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	4 cut(s)	158, 484, 530, 838
BsiHKAI	GWGCWC	3 cut(s)	250, 396, 468
BsiSI	CCGG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	818
BsmAI	GTCTC	4 cut(s)	50, 170, 380, 613
BsmFI	GGGAC	1 cut(s)	818
Bsp119I	TTCGAA	1 cut(s)	758
Bsp1286I	GDGCHC	3 cut(s)	250, 396, 468
Bsp143I	GATC	6 cut(s)	31, 312, 337, 489, 555, 819
Bsp1720I	GCTNAGC	1 cut(s)	269
Bsp19I	CCATGG	1 cut(s)	107
BspACI	CCGC	2 cut(s)	239, 782
BspCNI	CTCAG	7 cut(s)	282, 382, 526, 559, 633, 733, 847
BspMAI	CTGCAG	1 cut(s)	555
BspPI	GGATC	2 cut(s)	307, 345
BspT104I	TTCGAA	1 cut(s)	758
BsrDI	GCAATG	3 cut(s)	369, 486, 807
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	6 cut(s)	31, 312, 337, 489, 555, 819
BssSI	CACGAG	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	107
Bst2BI	CACGAG	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	678, 792
Bst4CI	ACNGT	6 cut(s)	101, 208, 230, 382, 638, 788
BstBAI	YACGTR	1 cut(s)	149
BstBI	TTCGAA	1 cut(s)	758
BstC8I	GCNNGC	1 cut(s)	564
BstDSI	CCRYGG	1 cut(s)	107
BstEII	GGTNACC	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	832
BstH2I	RGCGCY	1 cut(s)	798
BstHHI	GCGC	1 cut(s)	797
BstKTI	GATC	6 cut(s)	34, 315, 340, 492, 558, 822
BstMAI	GTCTC	4 cut(s)	50, 170, 380, 613
BstMBI	GATC	6 cut(s)	31, 312, 337, 489, 555, 819
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 254, 463, 559
BstNI	CCWGG	2 cut(s)	678, 792
BstPI	GGTNACC	1 cut(s)	134
BstSCI	CCNGG	3 cut(s)	88, 676, 790
BstSFI	CTRYAG	1 cut(s)	551
BstSLI	GKGCMC	1 cut(s)	468
BstV1I	GCAGC	4 cut(s)	158, 484, 530, 838
BstV2I	GAAGAC	1 cut(s)	824
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BtgI	CCRYGG	1 cut(s)	107
BtrI	CACGTC	2 cut(s)	469, 697
BtsCI	GGATG	1 cut(s)	832
BtsIMutI	CAGTG	2 cut(s)	97, 437
Cac8I	GCNNGC	1 cut(s)	564
CaiI	CAGNNNCTG	2 cut(s)	439, 797
CfoI	GCGC	1 cut(s)	797
Cfr13I	GGNCC	1 cut(s)	788
CseI	GACGC	1 cut(s)	640
Csp6I	GTAC	2 cut(s)	326, 724
CviAII	CATG	1 cut(s)	108
CviQI	GTAC	2 cut(s)	326, 724
DpnI	GATC	6 cut(s)	33, 314, 339, 491, 557, 821
DpnII	GATC	6 cut(s)	31, 312, 337, 489, 555, 819
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	396
Eco32I	GATATC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	788
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	821
Eco91I	GGTNACC	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	394
EcoO65I	GGTNACC	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	676, 790
EcoRV	GATATC	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	1 cut(s)	111
FaiI	YATR	8 cut(s)	109, 300, 407, 423, 602, 608, 707, 779
FaqI	GGGAC	1 cut(s)	818
FatI	CATG	1 cut(s)	107
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	4 cut(s)	172, 498, 519, 852
FokI	GGATG	1 cut(s)	839
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	4 cut(s)	172, 498, 519, 852
FspBI	CTAG	2 cut(s)	341, 504
GlaI	GCGC	1 cut(s)	796
GluI	GCNGC	4 cut(s)	172, 498, 519, 852
HaeII	RGCGCY	1 cut(s)	798
HapII	CCGG	1 cut(s)	89
HgaI	GACGC	1 cut(s)	640
HhaI	GCGC	1 cut(s)	797
Hin1II	CATG	1 cut(s)	111
Hin6I	GCGC	1 cut(s)	795
HinP1I	GCGC	1 cut(s)	795
HindIII	AAGCTT	2 cut(s)	9, 294
HinfI	GANTC	7 cut(s)	283, 289, 344, 547, 581, 668, 718
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	3 cut(s)	326, 466, 634
Hpy188I	TCNGA	6 cut(s)	288, 317, 435, 618, 642, 667
Hpy188III	TCNNGA	5 cut(s)	83, 251, 341, 472, 504
Hpy8I	GTNNAC	3 cut(s)	326, 466, 634
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	670, 733
HpyCH4III	ACNGT	6 cut(s)	101, 208, 230, 382, 638, 788
HpyCH4IV	ACGT	3 cut(s)	148, 468, 696
HpyCH4V	TGCA	3 cut(s)	374, 466, 553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 254, 463, 559
HpySE526I	ACGT	3 cut(s)	148, 468, 696
Hsp92II	CATG	1 cut(s)	111
HspAI	GCGC	1 cut(s)	795
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	6 cut(s)	31, 312, 337, 489, 555, 819
Lsp1109I	GCAGC	4 cut(s)	158, 484, 530, 838
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	2 cut(s)	341, 504
MaeII	ACGT	3 cut(s)	148, 468, 696
MaeIII	GTNAC	5 cut(s)	95, 134, 202, 715, 842
MalI	GATC	6 cut(s)	33, 314, 339, 491, 557, 821
MboI	GATC	6 cut(s)	31, 312, 337, 489, 555, 819
MboII	GAAGA	5 cut(s)	556, 678, 747, 824, 827
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	3 cut(s)	250, 396, 468
MluCI	AATT	2 cut(s)	68, 744
MlyI	GAGTC	3 cut(s)	338, 677, 712
MnlI	CCTC	6 cut(s)	273, 468, 508, 529, 562, 665
MroXI	GAANNNNTTC	1 cut(s)	685
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	3 cut(s)	90, 678, 792
MvaI	CCWGG	2 cut(s)	678, 792
MwoI	GCNNNNNNNGC	4 cut(s)	245, 254, 463, 559
NciI	CCSGG	1 cut(s)	90
NcoI	CCATGG	1 cut(s)	107
NdeII	GATC	6 cut(s)	31, 312, 337, 489, 555, 819
NlaIII	CATG	1 cut(s)	111
NmuCI	GTSAC	4 cut(s)	95, 134, 202, 715
NspV	TTCGAA	1 cut(s)	758
PcsI	WCGNNNNNNNCGW	1 cut(s)	663
PdmI	GAANNNNTTC	1 cut(s)	685
PfeI	GAWTC	4 cut(s)	283, 289, 547, 581
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	4 cut(s)	173, 499, 520, 853
PleI	GAGTC	3 cut(s)	338, 676, 712
PpsI	GAGTC	3 cut(s)	338, 676, 712
Ppu21I	YACGTR	1 cut(s)	149
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	676, 790
PspEI	GGTNACC	1 cut(s)	134
PspGI	CCWGG	2 cut(s)	676, 790
PspPI	GGNCC	1 cut(s)	788
PstI	CTGCAG	1 cut(s)	555
PstNI	CAGNNNCTG	2 cut(s)	439, 797
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	2 cut(s)	327, 725
RsaNI	GTAC	2 cut(s)	326, 724
SacI	GAGCTC	1 cut(s)	396
SatI	GCNGC	4 cut(s)	172, 498, 519, 852
Sau3AI	GATC	6 cut(s)	31, 312, 337, 489, 555, 819
Sau96I	GGNCC	1 cut(s)	788
ScaI	AGTACT	1 cut(s)	725
SchI	GAGTC	3 cut(s)	338, 677, 712
ScrFI	CCNGG	3 cut(s)	90, 678, 792
SduI	GDGCHC	3 cut(s)	250, 396, 468
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	551
SfuI	TTCGAA	1 cut(s)	758
SinI	GGWCC	1 cut(s)	788
SmlI	CTYRAG	2 cut(s)	83, 249
SmoI	CTYRAG	2 cut(s)	83, 249
Sse9I	AATT	2 cut(s)	68, 744
SsiI	CCGC	2 cut(s)	239, 782
SspMI	CTAG	2 cut(s)	341, 504
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	3 cut(s)	88, 676, 790
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	6 cut(s)	101, 208, 230, 382, 638, 788
TaiI	ACGT	3 cut(s)	151, 471, 699
TaqI	TCGA	7 cut(s)	38, 72, 162, 396, 453, 584, 758
TasI	AATT	2 cut(s)	68, 744
TatI	WGTACW	1 cut(s)	723
TfiI	GAWTC	4 cut(s)	283, 289, 547, 581
TscAI	CASTG	2 cut(s)	104, 444
TseFI	GTSAC	4 cut(s)	95, 134, 202, 715
TseI	GCWGC	4 cut(s)	171, 497, 518, 851
Tsp45I	GTSAC	4 cut(s)	95, 134, 202, 715
TspDTI	ATGAA	2 cut(s)	497, 766
TspRI	CASTG	2 cut(s)	104, 444
VneI	GTGCAC	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	788
XapI	RAATTY	1 cut(s)	68
XbaI	TCTAGA	2 cut(s)	340, 503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	697
XmnI	GAANNNNTTC	1 cut(s)	685
XspI	CTAG	2 cut(s)	341, 504
ZrmI	AGTACT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.