RLG00000034776

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003994
Physical Location & Seq
Forward (+)
54306449 .. 54308452
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034776

Sequence Viewer

Length: 579 bp
ATGGCAAGTGTTCCAAAGTTGGATCTAGACTCAACCTTTGAACAAAAGAATGATATCGCCAAAGCTGTGAAAGAAGAACTTGAAAAGGCCATTTCACATTATGGGTTTGAGATAGTACAAACATTGATTATGGATATCGAACCAGATGAGCATGTGAAGAGAGCGATGAATGAGATTAATGCAGCTGCTAGGATGAGGTTGGTTGCATCTGAGAGAGCTGAAGGAGATAAGATACTACAGATTAAGCGAGCTGAGGGAGAGGCAGAGTCCAAATATCTATTAGGGCTTGGCATAGAAAGGCAGCGCCGGGCTATTGTAGACGGGCTGAGAGATAGTGTGCTGGCTTTCTCTGAGAATGTACCTGGGACATCATGGATTTGGTTCTGTGGAATTACAGAATTTCTTAGTTCATGGCAGGGTGAGCCGAGTTTTCACTTCTTTGGATTTGTTATGTGCATTAGTGCAATTGCTGCAAGGGCATTTAAATCTGTTCTTCAGGGTATCCTATTTTCTTCTAACGGCAGTGAGGCAGTGGTGGATTCTGAGAATGATGTAGCTGCCGTAATTGTAAGTACTTAG

Protein Analysis

193

Amino Acids

21.22

Weight (kDa)

4.9

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 4 - 77 1.2e-08 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 318
AclWI GGATC 1 cut(s) 30
AcsI RAATTY 1 cut(s) 398
AcuI CTGAAG 2 cut(s) 240, 479
AfaI GTAC 3 cut(s) 117, 360, 574
AgsI TTSAA 2 cut(s) 41, 83
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 5 cut(s) 65, 185, 218, 251, 557
AluI AGCT 5 cut(s) 65, 185, 218, 251, 557
AlwI GGATC 1 cut(s) 30
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 5 cut(s) 182, 185, 301, 470, 557
ApoI RAATTY 1 cut(s) 398
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AseI ATTAAT 1 cut(s) 177
AspLEI GCGC 1 cut(s) 306
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 431
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 5 cut(s) 172, 194, 313, 457, 544
BceAI ACGGC 2 cut(s) 535, 545
BciT130I CCWGG 1 cut(s) 363
BciVI GTATCC 1 cut(s) 512
BcnI CCSGG 1 cut(s) 308
BfaI CTAG 2 cut(s) 26, 189
BfmI CTRYAG 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 307
BfuI GTATCC 1 cut(s) 512
BisI GCNGC 5 cut(s) 183, 186, 302, 471, 558
BlsI GCNGC 5 cut(s) 184, 187, 303, 472, 559
BmcAI AGTACT 1 cut(s) 574
Bme1390I CCNGG 2 cut(s) 308, 363
BmrFI CCNGG 2 cut(s) 308, 363
BmsI GCATC 1 cut(s) 215
Bpu10I CCTNAGC 1 cut(s) 252
BpuMI CCSGG 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 362
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 1 cut(s) 198
BseMII CTCAG 5 cut(s) 201, 243, 317, 342, 534
BseXI GCAGC 5 cut(s) 172, 194, 313, 457, 544
BshFI GGCC 1 cut(s) 89
BsiSI CCGG 1 cut(s) 307
BslFI GGGAC 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 22
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 5 cut(s) 202, 244, 318, 343, 535
BspPI GGATC 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 363
Bst6I CTCTTC 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 470
BstC8I GCNNGC 2 cut(s) 249, 342
BstDEI CTNAG 7 cut(s) 210, 252, 326, 351, 404, 543, 576
BstF5I GGATG 1 cut(s) 198
BstH2I RGCGCY 1 cut(s) 307
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 3 cut(s) 421, 470, 476
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 306, 361
BstSFI CTRYAG 1 cut(s) 236
BstV1I GCAGC 5 cut(s) 172, 194, 313, 457, 544
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuI GTATCC 1 cut(s) 512
BsuRI GGCC 1 cut(s) 89
BtgZI GCGATG 1 cut(s) 179
BtsCI GGATG 1 cut(s) 198
BtsI GCAGTG 2 cut(s) 529, 537
BtsIMutI CAGTG 2 cut(s) 529, 537
Cac8I GCNNGC 2 cut(s) 249, 342
CfoI GCGC 1 cut(s) 306
Csp6I GTAC 3 cut(s) 116, 359, 573
CviAII CATG 3 cut(s) 152, 372, 411
CviQI GTAC 3 cut(s) 116, 359, 573
DdeI CTNAG 7 cut(s) 210, 252, 326, 351, 404, 543, 576
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
DraI TTTAAA 1 cut(s) 484
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco32I GATATC 2 cut(s) 55, 136
Eco57I CTGAAG 2 cut(s) 240, 479
EcoRII CCWGG 1 cut(s) 361
EcoRV GATATC 2 cut(s) 55, 136
FaeI CATG 3 cut(s) 155, 375, 414
FaiI YATR 7 cut(s) 102, 131, 153, 293, 373, 412, 452
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FaqI GGGAC 1 cut(s) 379
FatI CATG 3 cut(s) 151, 371, 410
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 5 cut(s) 183, 186, 302, 471, 558
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 5 cut(s) 183, 186, 302, 471, 558
FspBI CTAG 2 cut(s) 26, 189
GlaI GCGC 1 cut(s) 305
GluI GCNGC 5 cut(s) 183, 186, 302, 471, 558
HaeII RGCGCY 1 cut(s) 307
HaeIII GGCC 1 cut(s) 89
HapII CCGG 1 cut(s) 307
HhaI GCGC 1 cut(s) 306
Hin1II CATG 3 cut(s) 155, 375, 414
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HinfI GANTC 3 cut(s) 29, 266, 539
HpaII CCGG 1 cut(s) 307
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 3 cut(s) 211, 352, 544
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 1 cut(s) 215
HpyCH4V TGCA 5 cut(s) 182, 206, 456, 464, 473
HpyF10VI GCNNNNNNNGC 3 cut(s) 421, 470, 476
HpyF3I CTNAG 7 cut(s) 210, 252, 326, 351, 404, 543, 576
Hsp92II CATG 3 cut(s) 155, 375, 414
HspAI GCGC 1 cut(s) 304
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 7 cut(s) 156, 320, 326, 348, 375, 401, 482
Lsp1109I GCAGC 5 cut(s) 172, 194, 313, 457, 544
LweI GCATC 1 cut(s) 215
MaeI CTAG 2 cut(s) 26, 189
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 4 cut(s) 86, 169, 485, 504
MfeI CAATTG 1 cut(s) 465
MflI RGATCY 1 cut(s) 22
MluCI AATT 4 cut(s) 390, 398, 465, 564
MlyI GAGTC 2 cut(s) 23, 275
MnlI CCTC 4 cut(s) 189, 247, 253, 520
MseI TTAA 3 cut(s) 177, 243, 483
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 1 cut(s) 307
MspR9I CCNGG 2 cut(s) 308, 363
MunI CAATTG 1 cut(s) 465
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 3 cut(s) 421, 470, 476
NciI CCSGG 1 cut(s) 308
NdeII GATC 1 cut(s) 22
NlaIII CATG 3 cut(s) 155, 375, 414
NmeAIII GCCGAG 1 cut(s) 450
NspI RCATGY 1 cut(s) 155
PfeI GAWTC 1 cut(s) 539
PkrI GCNGC 5 cut(s) 184, 187, 303, 472, 559
PleI GAGTC 2 cut(s) 23, 274
PpsI GAGTC 2 cut(s) 23, 274
PshBI ATTAAT 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PsuI RGATCY 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 3 cut(s) 117, 360, 574
RsaNI GTAC 3 cut(s) 116, 359, 573
SaqAI TTAA 3 cut(s) 177, 243, 483
SatI GCNGC 5 cut(s) 183, 186, 302, 471, 558
Sau3AI GATC 1 cut(s) 22
ScaI AGTACT 1 cut(s) 574
SchI GAGTC 2 cut(s) 23, 275
ScrFI CCNGG 2 cut(s) 308, 363
SetI ASST 8 cut(s) 38, 67, 187, 200, 220, 253, 364, 559
SfaNI GCATC 1 cut(s) 215
SfcI CTRYAG 1 cut(s) 236
SmiI ATTTAAAT 1 cut(s) 484
Sse9I AATT 4 cut(s) 390, 398, 465, 564
SspMI CTAG 2 cut(s) 26, 189
StyD4I CCNGG 2 cut(s) 306, 361
SwaI ATTTAAAT 1 cut(s) 484
TaqI TCGA 1 cut(s) 138
TasI AATT 4 cut(s) 390, 398, 465, 564
TatI WGTACW 2 cut(s) 115, 572
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 3 cut(s) 177, 243, 483
Tru9I TTAA 3 cut(s) 177, 243, 483
TscAI CASTG 2 cut(s) 529, 537
TseI GCWGC 5 cut(s) 182, 185, 301, 470, 557
TspDTI ATGAA 2 cut(s) 182, 399
TspRI CASTG 2 cut(s) 529, 537
VspI ATTAAT 1 cut(s) 177
XapI RAATTY 1 cut(s) 398
XbaI TCTAGA 1 cut(s) 25
XceI RCATGY 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 318
XspI CTAG 2 cut(s) 26, 189
ZrmI AGTACT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.