Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003994

Physical Location & Seq

Genomic Coordinates Forward (+)

83954089 .. 83958016

Gene Structure 3928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG546200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTTCCACGATTGGCTCTCCAAGCAGTTCGTCCTCGTCGATGCCGCCATCGTCATCGTCATCGTCACTAGTGGATGCTGCTATTGGCGGCATCATGGGTACTTTCACCGGCGACATTTCCTCCTCTCTCCCCACTCCTCTGCCTCAGGCCGGCCTAAACCCCCAAACCATGGCCTCCTTCAAGCAAGCCCAGGATAACATCCAGTCTTATGTCTTTAATGTTATCAGGGCAAGTGTTCCAAAGTTGGATCTAGACTCAACCTTTGAACAGAAGAATGATATCGCCAAAGCTGTGGAAGAAGAACTTGAAAAGGTCATGTCACATTATGGGTTTGAGACAGTACAAACATTGATTGTGGATATCGAACCAGATGAGCATGTGAAGAGAGCGATGAATGAGATTAATGCAGCTGCTAGGATGAGGTTGGCTGCATCTGAGAGAGCTGAAGGAGATAAGATACTACAGATTAAGCGAGCTGAGGGAGAGGCAGAGTCCAAATATCTGTCAGGGCTTGGCATAGCAAGGCAGCGCCAGGCTATTGTGGACGGGCTGAGAGAGCGTGCTGGCTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

192

Amino Acids

20.61

Weight (kDa)

5.02

Isoelectric Point (pI)

59.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	57 - 153	7.9e-12	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840
fragaria_vesca	FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920
malus_domestica	MD13G1078800.v1.1 MD16G1078400.v1.1
prunus_persica	Prupe.1G268100_v2.0.a1 Prupe.1G268100_v2.0.a1 Prupe.1G268100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0440581
rosa_laevigata	RLG00000006166 RLG00000031225 RLG00000034776
rosa_multiflora	Rmu_sc0008018.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381410
rosa_rugosa	Rorug04G0326800
rosa_samantha	Rh4AG378700 Rh4BG391300 Rh4DG385200 Rh5DG546200
rosa_wichuraiana	Rw4G032520 Rw4G032560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	172
AciI	CCGC	2 cut(s)	47, 90
AclWI	GGATC	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	2 cut(s)	103, 345
AfiI	CCNNNNNNNGG	2 cut(s)	152, 172
AgsI	TTSAA	3 cut(s)	184, 269, 311
AhlI	ACTAGT	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	192, 534
AluBI	AGCT	4 cut(s)	293, 413, 446, 479
AluI	AGCT	4 cut(s)	293, 413, 446, 479
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	1 cut(s)	258
AoxI	GGCC	3 cut(s)	150, 154, 174
ApeKI	GCWGC	5 cut(s)	80, 410, 413, 431, 529
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
AseI	ATTAAT	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	534
AsuHPI	GGTGA	1 cut(s)	100
AxyI	CCTNAGG	1 cut(s)	147
BbvCI	CCTCAGC	1 cut(s)	480
BbvI	GCAGC	5 cut(s)	67, 400, 418, 422, 541
BccI	CCATC	1 cut(s)	58
BciT130I	CCWGG	2 cut(s)	194, 536
BcoDI	GTCTC	1 cut(s)	332
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	3 cut(s)	71, 254, 417
BfmI	CTRYAG	1 cut(s)	464
BfoI	RGCGCY	1 cut(s)	535
BisI	GCNGC	7 cut(s)	47, 81, 91, 411, 414, 432, 530
BlsI	GCNGC	7 cut(s)	48, 82, 92, 412, 415, 433, 531
Bme1390I	CCNGG	2 cut(s)	194, 536
BmrFI	CCNGG	2 cut(s)	194, 536
BmsI	GCATC	4 cut(s)	33, 67, 102, 443
Bpu10I	CCTNAGC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	171, 192
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 172
Bse118I	RCCGGY	2 cut(s)	110, 152
Bse1I	ACTGG	1 cut(s)	205
Bse21I	CCTNAGG	1 cut(s)	147
BseBI	CCWGG	2 cut(s)	194, 536
BseDI	CCNNGG	2 cut(s)	171, 192
BseGI	GGATG	3 cut(s)	82, 201, 426
BseLI	CCNNNNNNNGG	2 cut(s)	152, 172
BseMII	CTCAG	4 cut(s)	161, 429, 471, 545
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	2 cut(s)	115, 129
BseXI	GCAGC	5 cut(s)	67, 400, 418, 422, 541
BshFI	GGCC	3 cut(s)	152, 156, 176
BsiSI	CCGG	2 cut(s)	111, 153
BslI	CCNNNNNNNGG	2 cut(s)	152, 172
BsmAI	GTCTC	1 cut(s)	332
BsnI	GGCC	3 cut(s)	152, 156, 176
Bsp143I	GATC	1 cut(s)	250
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	2 cut(s)	47, 90
BspANI	GGCC	3 cut(s)	152, 156, 176
BspCNI	CTCAG	4 cut(s)	160, 430, 472, 546
BspPI	GGATC	1 cut(s)	258
BsrFI	RCCGGY	2 cut(s)	110, 152
BsrI	ACTGG	1 cut(s)	205
BssAI	RCCGGY	2 cut(s)	110, 152
BssECI	CCNNGG	2 cut(s)	171, 192
BssMI	GATC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	2 cut(s)	194, 536
Bst4CI	ACNGT	1 cut(s)	343
Bst6I	CTCTTC	1 cut(s)	380
BstC8I	GCNNGC	5 cut(s)	154, 189, 477, 564, 568
BstDEI	CTNAG	4 cut(s)	147, 438, 480, 554
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	3 cut(s)	82, 201, 426
BstH2I	RGCGCY	1 cut(s)	535
BstHHI	GCGC	1 cut(s)	534
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 559
BstNI	CCWGG	2 cut(s)	194, 536
BstNSI	RCATGY	1 cut(s)	383
BstSCI	CCNGG	2 cut(s)	192, 534
BstSFI	CTRYAG	1 cut(s)	464
BstV1I	GCAGC	5 cut(s)	67, 400, 418, 422, 541
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	250
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	3 cut(s)	152, 156, 176
BtgI	CCRYGG	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	407
BtsCI	GGATG	3 cut(s)	82, 201, 426
Cac8I	GCNNGC	5 cut(s)	154, 189, 477, 564, 568
CfoI	GCGC	1 cut(s)	534
Cfr10I	RCCGGY	2 cut(s)	110, 152
Csp6I	GTAC	2 cut(s)	102, 344
CviAII	CATG	4 cut(s)	97, 172, 319, 380
CviQI	GTAC	2 cut(s)	102, 344
DdeI	CTNAG	4 cut(s)	147, 438, 480, 554
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	171
Eco32I	GATATC	2 cut(s)	283, 364
Eco57I	CTGAAG	1 cut(s)	468
Eco81I	CCTNAGG	1 cut(s)	147
EcoRII	CCWGG	2 cut(s)	192, 534
EcoRV	GATATC	2 cut(s)	283, 364
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	4 cut(s)	100, 175, 322, 383
FaiI	YATR	7 cut(s)	98, 173, 213, 320, 330, 381, 521
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FatI	CATG	4 cut(s)	96, 171, 318, 379
Fnu4HI	GCNGC	7 cut(s)	47, 81, 91, 411, 414, 432, 530
FokI	GGATG	3 cut(s)	89, 188, 433
FseI	GGCCGGCC	1 cut(s)	156
Fsp4HI	GCNGC	7 cut(s)	47, 81, 91, 411, 414, 432, 530
FspBI	CTAG	3 cut(s)	71, 254, 417
GlaI	GCGC	1 cut(s)	533
GluI	GCNGC	7 cut(s)	47, 81, 91, 411, 414, 432, 530
HaeII	RGCGCY	1 cut(s)	535
HaeIII	GGCC	3 cut(s)	152, 156, 176
HapII	CCGG	2 cut(s)	111, 153
HhaI	GCGC	1 cut(s)	534
Hin1II	CATG	4 cut(s)	100, 175, 322, 383
Hin6I	GCGC	1 cut(s)	532
HinP1I	GCGC	1 cut(s)	532
HinfI	GANTC	2 cut(s)	257, 494
HpaII	CCGG	2 cut(s)	111, 153
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188I	TCNGA	2 cut(s)	439, 578
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	547
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	190, 443
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4V	TGCA	2 cut(s)	410, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 559
HpyF3I	CTNAG	4 cut(s)	147, 438, 480, 554
Hsp92II	CATG	4 cut(s)	100, 175, 322, 383
HspAI	GCGC	1 cut(s)	532
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	250
Lsp1109I	GCAGC	5 cut(s)	67, 400, 418, 422, 541
LweI	GCATC	4 cut(s)	33, 67, 102, 443
MaeI	CTAG	3 cut(s)	71, 254, 417
MaeIII	GTNAC	2 cut(s)	66, 321
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	4 cut(s)	286, 311, 314, 397
MflI	RGATCY	1 cut(s)	250
MlyI	GAGTC	2 cut(s)	251, 503
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	9 cut(s)	46, 133, 136, 150, 156, 187, 417, 475, 481
MroNI	GCCGGC	1 cut(s)	152
MseI	TTAA	3 cut(s)	219, 405, 471
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	2 cut(s)	111, 153
MspR9I	CCNGG	2 cut(s)	194, 536
MvaI	CCWGG	2 cut(s)	194, 536
MwoI	GCNNNNNNNGC	2 cut(s)	24, 559
NaeI	GCCGGC	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	1 cut(s)	250
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	4 cut(s)	100, 175, 322, 383
NmuCI	GTSAC	2 cut(s)	66, 321
NspI	RCATGY	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PdiI	GCCGGC	1 cut(s)	154
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	7 cut(s)	48, 82, 92, 412, 415, 433, 531
PleI	GAGTC	2 cut(s)	251, 502
PpsI	GAGTC	2 cut(s)	251, 502
PshBI	ATTAAT	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	192, 534
PspGI	CCWGG	2 cut(s)	192, 534
PsuI	RGATCY	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	413
RigI	GGCCGGCC	1 cut(s)	156
RsaI	GTAC	2 cut(s)	103, 345
RsaNI	GTAC	2 cut(s)	102, 344
SaqAI	TTAA	3 cut(s)	219, 405, 471
SatI	GCNGC	7 cut(s)	47, 81, 91, 411, 414, 432, 530
Sau3AI	GATC	1 cut(s)	250
SchI	GAGTC	2 cut(s)	251, 503
ScrFI	CCNGG	2 cut(s)	194, 536
SetI	ASST	7 cut(s)	266, 295, 318, 415, 428, 448, 481
SfaNI	GCATC	4 cut(s)	33, 67, 102, 443
SfcI	CTRYAG	1 cut(s)	464
SgrAI	CRCCGGYG	1 cut(s)	110
SpeI	ACTAGT	1 cut(s)	70
SsiI	CCGC	2 cut(s)	47, 90
SspMI	CTAG	3 cut(s)	71, 254, 417
StyD4I	CCNGG	2 cut(s)	192, 534
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	343
TaqI	TCGA	2 cut(s)	41, 366
TatI	WGTACW	1 cut(s)	343
TauI	GCSGC	2 cut(s)	49, 93
Tru1I	TTAA	3 cut(s)	219, 405, 471
Tru9I	TTAA	3 cut(s)	219, 405, 471
TseFI	GTSAC	2 cut(s)	66, 321
TseI	GCWGC	5 cut(s)	80, 410, 413, 431, 529
Tsp45I	GTSAC	2 cut(s)	66, 321
TspDTI	ATGAA	1 cut(s)	410
Van91I	CCANNNNNTGG	1 cut(s)	172
VspI	ATTAAT	1 cut(s)	405
XbaI	TCTAGA	1 cut(s)	253
XceI	RCATGY	1 cut(s)	383
XspI	CTAG	3 cut(s)	71, 254, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.