Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003994

Physical Location & Seq

Genomic Coordinates Forward (+)

27545533 .. 27550158

Gene Structure 4626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G268100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGACAAGCTCTTGGTTGTGTTCAAGTGGACCAGTCTACTGTTGCTATCAGAGAAACTTTTGGGAAGTTTGATGATGTGCTTGAACCTGGTTGTCACTGTTTGCCTTGGTGTTTGGGTAGCCAGATAGCTGGTCATCTCTCTTTACGTGTGCAGCAATTGGATGTTCGCTGTGAAACAAAGACAAAGGATAACGTTTTTGTTACTGTGGTTGCATCTATTCAATATCGAGCTTTAGCTGAGAAGGCTTCAGATGCCTTTTACAAGCTCAGCAATACCAGAGGGCAGATCCAATCTTATGTCTTCGATGTTATCAGGGCTAGTGTTCCGAAGTTGGATCTAGATTCAACCTTTGAGCAAAAGAATGACATAGCCAAAGCTGTTGAAGAAGAACTTGAAAAGGCCATGTCACATTATGGGTTTGAGATAGTTCAAACACTAATTGTGGATATTGAACCAGATGAGCATGTGAAGAGAGCAATGAATGAGATAAATGCAGCTGCAAGGATGAGGTTGGCTGCAACTGAGAAAGCTGAAGCAGAGAAGATATTGCAGATTAAGCGAGCTGAGGGAGAGGCAGAGTCCAAATATCTGTCAGGGCTTGGAATAGCAAGGCAGCGCCAGGCCATTGTGGACGGGCTGAGAGACAGTGTGCTGGCCTTCTCTGAGAATGTGCCAGGGACATCATCAAAGGATGTCATGGACATGGTTCTGGTGACCCAGTACTTCGACACAATGAAGGAGATCGGTGCATCCTCAAAGTCCAATTCGGTTTTCATCCCACACGGCCCCGGTGCCGTGAGAGACATTGCTTCACAGATACGAGATGGCCTCCTTCAAGCAAATCCACCTCAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

287

Amino Acids

31.46

Weight (kDa)

5.27

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840
fragaria_vesca	FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920
malus_domestica	MD13G1078800.v1.1 MD16G1078400.v1.1
prunus_persica	Prupe.1G268100_v2.0.a1 Prupe.1G268100_v2.0.a1 Prupe.1G268100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0440581
rosa_laevigata	RLG00000006166 RLG00000031225 RLG00000034776
rosa_multiflora	Rmu_sc0008018.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381410
rosa_rugosa	Rorug04G0326800
rosa_samantha	Rh4AG378700 Rh4BG391300 Rh4DG385200 Rh5DG546200
rosa_wichuraiana	Rw4G032520 Rw4G032560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	794
AccI	GTMKAC	1 cut(s)	38
AclI	AACGTT	1 cut(s)	195
AclWI	GGATC	2 cut(s)	283, 345
AcuI	CTGAAG	2 cut(s)	234, 555
AfaI	GTAC	1 cut(s)	725
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	9 cut(s)	26, 86, 224, 348, 386, 398, 434, 455, 839
AjnI	CCWGG	3 cut(s)	88, 621, 676
AjuI	GAANNNNNNNTTGG	2 cut(s)	758, 790
AluBI	AGCT	9 cut(s)	11, 131, 233, 239, 268, 380, 500, 533, 566
AluI	AGCT	9 cut(s)	11, 131, 233, 239, 268, 380, 500, 533, 566
Alw26I	GTCTC	2 cut(s)	639, 798
AlwI	GGATC	2 cut(s)	283, 345
AoxI	GGCC	5 cut(s)	402, 624, 657, 787, 829
ApeKI	GCWGC	5 cut(s)	154, 497, 500, 518, 616
AspLEI	GCGC	1 cut(s)	621
AspS9I	GGNCC	2 cut(s)	31, 788
AsuC2I	CCSGG	1 cut(s)	792
AsuHPI	GGTGA	1 cut(s)	727
AvaII	GGWCC	1 cut(s)	31
AxyI	CCTNAGG	1 cut(s)	852
BanI	GGYRCC	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	295
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	5 cut(s)	166, 487, 505, 509, 628
BccI	CCATC	1 cut(s)	821
BceAI	ACGGC	2 cut(s)	782, 802
BciT130I	CCWGG	3 cut(s)	90, 623, 678
BcnI	CCSGG	1 cut(s)	792
BcoDI	GTCTC	2 cut(s)	639, 798
BfaI	CTAG	2 cut(s)	321, 341
BfoI	RGCGCY	1 cut(s)	622
BisI	GCNGC	5 cut(s)	155, 498, 501, 519, 617
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	5 cut(s)	156, 499, 502, 520, 618
BmcAI	AGTACT	1 cut(s)	725
Bme1390I	CCNGG	4 cut(s)	90, 623, 678, 792
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	31, 788
BmiI	GGNNCC	2 cut(s)	790, 796
BmrFI	CCNGG	4 cut(s)	90, 623, 678, 792
BmrI	ACTGGG	1 cut(s)	715
BmsI	GCATC	3 cut(s)	224, 244, 761
BmuI	ACTGGG	1 cut(s)	715
BpiI	GAAGAC	1 cut(s)	295
BplI	GAGNNNNNCTC	2 cut(s)	816, 848
Bpu10I	CCTNAGC	1 cut(s)	567
Bpu1102I	GCTNAGC	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	792
BsaAI	YACGTR	1 cut(s)	149
BsaJI	CCNNGG	3 cut(s)	107, 677, 790
Bse1I	ACTGG	2 cut(s)	34, 721
Bse21I	CCTNAGG	1 cut(s)	852
Bse3DI	GCAATG	2 cut(s)	486, 807
BseBI	CCWGG	3 cut(s)	90, 623, 678
BseDI	CCNNGG	3 cut(s)	107, 677, 790
BseGI	GGATG	5 cut(s)	169, 513, 700, 752, 777
BseMI	GCAATG	2 cut(s)	486, 807
BseMII	CTCAG	6 cut(s)	231, 283, 516, 558, 632, 657
BseNI	ACTGG	2 cut(s)	34, 721
BseXI	GCAGC	5 cut(s)	166, 487, 505, 509, 628
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	5 cut(s)	404, 626, 659, 789, 831
BshNI	GGYRCC	1 cut(s)	794
BsiSI	CCGG	1 cut(s)	792
BslFI	GGGAC	2 cut(s)	18, 694
BsmAI	GTCTC	2 cut(s)	639, 798
BsmFI	GGGAC	2 cut(s)	18, 694
BsnI	GGCC	5 cut(s)	404, 626, 659, 789, 831
Bsp143I	GATC	3 cut(s)	288, 337, 744
Bsp1720I	GCTNAGC	1 cut(s)	269
BspANI	GGCC	5 cut(s)	404, 626, 659, 789, 831
BspCNI	CTCAG	6 cut(s)	232, 282, 517, 559, 633, 658
BspLI	GGNNCC	2 cut(s)	790, 796
BspPI	GGATC	2 cut(s)	283, 345
BspT107I	GGYRCC	1 cut(s)	794
BsrDI	GCAATG	2 cut(s)	486, 807
BsrI	ACTGG	2 cut(s)	34, 721
BssECI	CCNNGG	3 cut(s)	107, 677, 790
BssMI	GATC	3 cut(s)	288, 337, 744
BssT1I	CCWWGG	1 cut(s)	107
Bst2UI	CCWGG	3 cut(s)	90, 623, 678
Bst4CI	ACNGT	4 cut(s)	43, 101, 208, 650
Bst6I	CTCTTC	1 cut(s)	467
BstBAI	YACGTR	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	564, 657
BstDEI	CTNAG	7 cut(s)	240, 269, 525, 567, 641, 666, 852
BstEII	GGTNACC	1 cut(s)	715
BstF5I	GGATG	5 cut(s)	169, 513, 700, 752, 777
BstH2I	RGCGCY	1 cut(s)	622
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	3 cut(s)	291, 340, 747
BstMAI	GTCTC	2 cut(s)	639, 798
BstMBI	GATC	3 cut(s)	288, 337, 744
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 254, 559
BstNI	CCWGG	3 cut(s)	90, 623, 678
BstNSI	RCATGY	1 cut(s)	470
BstPI	GGTNACC	1 cut(s)	715
BstSCI	CCNGG	4 cut(s)	88, 621, 676, 790
BstV1I	GCAGC	5 cut(s)	166, 487, 505, 509, 628
BstV2I	GAAGAC	1 cut(s)	295
BstX2I	RGATCY	2 cut(s)	288, 337
BstXI	CCANNNNNNTGG	1 cut(s)	131
BstYI	RGATCY	2 cut(s)	288, 337
Bsu36I	CCTNAGG	1 cut(s)	852
BsuRI	GGCC	5 cut(s)	404, 626, 659, 789, 831
BtsCI	GGATG	5 cut(s)	169, 513, 700, 752, 777
BtsIMutI	CAGTG	2 cut(s)	97, 655
Cac8I	GCNNGC	2 cut(s)	564, 657
CfoI	GCGC	1 cut(s)	621
Cfr13I	GGNCC	2 cut(s)	31, 788
CsiI	ACCWGGT	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	724
CviAII	CATG	4 cut(s)	406, 467, 700, 706
CviQI	GTAC	1 cut(s)	724
DdeI	CTNAG	7 cut(s)	240, 269, 525, 567, 641, 666, 852
DpnI	GATC	3 cut(s)	290, 339, 746
DpnII	GATC	3 cut(s)	288, 337, 744
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
Eco130I	CCWWGG	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	31
Eco57I	CTGAAG	2 cut(s)	234, 555
Eco81I	CCTNAGG	1 cut(s)	852
Eco91I	GGTNACC	1 cut(s)	715
EcoO65I	GGTNACC	1 cut(s)	715
EcoRII	CCWGG	3 cut(s)	88, 621, 676
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	4 cut(s)	409, 470, 703, 709
FaiI	YATR	7 cut(s)	300, 371, 407, 417, 468, 701, 707
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	2 cut(s)	18, 694
FatI	CATG	4 cut(s)	405, 466, 699, 705
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	5 cut(s)	155, 498, 501, 519, 617
FokI	GGATG	5 cut(s)	176, 520, 707, 739, 764
Fsp4HI	GCNGC	5 cut(s)	155, 498, 501, 519, 617
FspBI	CTAG	2 cut(s)	321, 341
GlaI	GCGC	1 cut(s)	620
GluI	GCNGC	5 cut(s)	155, 498, 501, 519, 617
HaeII	RGCGCY	1 cut(s)	622
HaeIII	GGCC	5 cut(s)	404, 626, 659, 789, 831
HapII	CCGG	1 cut(s)	792
HhaI	GCGC	1 cut(s)	621
Hin1II	CATG	4 cut(s)	409, 470, 703, 709
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HinfI	GANTC	2 cut(s)	344, 581
HpaII	CCGG	1 cut(s)	792
HphI	GGTGA	1 cut(s)	727
Hpy166II	GTNNAC	3 cut(s)	31, 39, 634
Hpy188I	TCNGA	4 cut(s)	53, 253, 330, 667
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	3 cut(s)	31, 39, 634
HpyAV	CCTTC	4 cut(s)	238, 670, 733, 845
HpyCH4III	ACNGT	4 cut(s)	43, 101, 208, 650
HpyCH4IV	ACGT	2 cut(s)	148, 195
HpyCH4V	TGCA	7 cut(s)	154, 215, 497, 503, 521, 553, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 254, 559
HpyF3I	CTNAG	7 cut(s)	240, 269, 525, 567, 641, 666, 852
HpySE526I	ACGT	2 cut(s)	148, 195
Hsp92II	CATG	4 cut(s)	409, 470, 703, 709
HspAI	GCGC	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	288, 337, 744
Lsp1109I	GCAGC	5 cut(s)	166, 487, 505, 509, 628
LweI	GCATC	3 cut(s)	224, 244, 761
MabI	ACCWGGT	1 cut(s)	88
MaeI	CTAG	2 cut(s)	321, 341
MaeII	ACGT	2 cut(s)	148, 195
MaeIII	GTNAC	4 cut(s)	95, 202, 408, 715
MalI	GATC	3 cut(s)	290, 339, 746
MboI	GATC	3 cut(s)	288, 337, 744
MboII	GAAGA	5 cut(s)	295, 398, 401, 484, 556
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	2 cut(s)	288, 337
MluCI	AATT	3 cut(s)	158, 441, 766
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	7 cut(s)	275, 504, 562, 568, 766, 842, 861
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	1 cut(s)	704
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	792
MspR9I	CCNGG	4 cut(s)	90, 623, 678, 792
MunI	CAATTG	1 cut(s)	158
MvaI	CCWGG	3 cut(s)	90, 623, 678
MwoI	GCNNNNNNNGC	3 cut(s)	245, 254, 559
NciI	CCSGG	1 cut(s)	792
NdeII	GATC	3 cut(s)	288, 337, 744
NlaIII	CATG	4 cut(s)	409, 470, 703, 709
NlaIV	GGNNCC	2 cut(s)	790, 796
NmuCI	GTSAC	3 cut(s)	95, 408, 715
NspI	RCATGY	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	5 cut(s)	156, 499, 502, 520, 618
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
Ppu21I	YACGTR	1 cut(s)	149
Psp1406I	AACGTT	1 cut(s)	195
Psp6I	CCWGG	3 cut(s)	88, 621, 676
PspEI	GGTNACC	1 cut(s)	715
PspGI	CCWGG	3 cut(s)	88, 621, 676
PspN4I	GGNNCC	2 cut(s)	790, 796
PspPI	GGNCC	2 cut(s)	31, 788
PsuI	RGATCY	2 cut(s)	288, 337
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	725
RsaNI	GTAC	1 cut(s)	724
RseI	CAYNNNNRTG	1 cut(s)	704
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	5 cut(s)	155, 498, 501, 519, 617
Sau3AI	GATC	3 cut(s)	288, 337, 744
Sau96I	GGNCC	2 cut(s)	31, 788
ScaI	AGTACT	1 cut(s)	725
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	4 cut(s)	90, 623, 678, 792
SexAI	ACCWGGT	1 cut(s)	88
SfaNI	GCATC	3 cut(s)	224, 244, 761
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	704
Sse9I	AATT	3 cut(s)	158, 441, 766
SspMI	CTAG	2 cut(s)	321, 341
StyD4I	CCNGG	4 cut(s)	88, 621, 676, 790
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	4 cut(s)	43, 101, 208, 650
TaiI	ACGT	2 cut(s)	151, 198
TaqI	TCGA	3 cut(s)	229, 306, 729
TasI	AATT	3 cut(s)	158, 441, 766
TatI	WGTACW	1 cut(s)	723
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	2 cut(s)	104, 655
TseFI	GTSAC	3 cut(s)	95, 408, 715
TseI	GCWGC	5 cut(s)	154, 497, 500, 518, 616
Tsp45I	GTSAC	3 cut(s)	95, 408, 715
TspDTI	ATGAA	3 cut(s)	497, 752, 766
TspRI	CASTG	2 cut(s)	104, 655
VpaK11BI	GGWCC	1 cut(s)	31
XbaI	TCTAGA	1 cut(s)	340
XceI	RCATGY	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	2 cut(s)	321, 341
ZrmI	AGTACT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.