RLG00000031225

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003994
Physical Location & Seq
Forward (+)
3166425 .. 3168488
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031225

Sequence Viewer

Length: 576 bp
ATGCACCTTCAGAATTCATTGAATTCTTTTTTCTGCTCAGTTATCATGGCAAGTGTTCCAAAGTTGGATCTAGACTCAACCTTTGAACAGAAAAATGATATCGCCAAAGCTGTGGAAGAAGAACTTGAAAAGGCCATGTCACATTATGGGTTTGAGATAGTACAAACATTGATTGTGGATATCGAACCAGATGAGCATGTGAAGAGAGCGATGAATGAGATTAATGCAGCTGCTAGGATGAGGTTGGTTGCATCTGAGAGAGCTGAAAGAGATAAGATACTACAGATTAAGCGAGCTAAGGGAGAGGCAGAGTCCAAATATCTATCAGGGCTTGGCATAGCAAGGCAGCGCCAGGCTATTGTGGACGGGCTGAGAAACAGCGTGCTGGCTTTCTCTGAGAATGGTGAGCCGAGTTTTCACTTCTTTGGATTTGTTATGTGCATTAGTGCAACTGCTGCAAGGGCATTTAAATCTGTTCTTCAGGGTATCCTATTTTCTTCTAACGGCAGTGAGGCAGTGGTGGATTCTGAGAATGATGTAGCTGCTGTAATTGTAAGTACTTGGAGCACCAAATGA

Protein Analysis

192

Amino Acids

21.07

Weight (kDa)

5.44

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 4 - 91 6.3e-10 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 75
AcsI RAATTY 2 cut(s) 13, 22
AcuI CTGAAG 1 cut(s) 464
AfaI GTAC 2 cut(s) 162, 559
AgsI TTSAA 3 cut(s) 22, 86, 128
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 5 cut(s) 110, 230, 263, 296, 542
AluI AGCT 5 cut(s) 110, 230, 263, 296, 542
Alw21I GWGCWC 1 cut(s) 569
AlwI GGATC 1 cut(s) 75
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 5 cut(s) 227, 230, 346, 455, 542
ApoI RAATTY 2 cut(s) 13, 22
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AseI ATTAAT 1 cut(s) 222
AspLEI GCGC 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 569
BbvI GCAGC 5 cut(s) 217, 239, 358, 442, 529
BceAI ACGGC 1 cut(s) 520
BciT130I CCWGG 1 cut(s) 353
BciVI GTATCC 1 cut(s) 497
BfaI CTAG 2 cut(s) 71, 234
BfmI CTRYAG 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 352
BfuI GTATCC 1 cut(s) 497
BisI GCNGC 5 cut(s) 228, 231, 347, 456, 543
BlsI GCNGC 5 cut(s) 229, 232, 348, 457, 544
BmcAI AGTACT 1 cut(s) 559
Bme1390I CCNGG 1 cut(s) 353
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 297
BseBI CCWGG 1 cut(s) 353
BseGI GGATG 1 cut(s) 243
BseMII CTCAG 5 cut(s) 51, 246, 362, 387, 519
BseXI GCAGC 5 cut(s) 217, 239, 358, 442, 529
BshFI GGCC 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 569
BsnI GGCC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 569
Bsp143I GATC 1 cut(s) 67
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 5 cut(s) 50, 247, 363, 388, 520
BspPI GGATC 1 cut(s) 75
BssMI GATC 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 353
Bst6I CTCTTC 1 cut(s) 197
BstAPI GCANNNNNTGC 1 cut(s) 455
BstC8I GCNNGC 3 cut(s) 294, 383, 387
BstDEI CTNAG 6 cut(s) 37, 255, 297, 371, 396, 528
BstF5I GGATG 1 cut(s) 243
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 2 cut(s) 455, 461
BstNI CCWGG 1 cut(s) 353
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 351
BstSFI CTRYAG 1 cut(s) 281
BstV1I GCAGC 5 cut(s) 217, 239, 358, 442, 529
BstX2I RGATCY 1 cut(s) 67
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 1 cut(s) 67
BsuI GTATCC 1 cut(s) 497
BsuRI GGCC 1 cut(s) 134
BtgZI GCGATG 1 cut(s) 224
BtsCI GGATG 1 cut(s) 243
BtsI GCAGTG 2 cut(s) 514, 522
BtsIMutI CAGTG 2 cut(s) 514, 522
Cac8I GCNNGC 3 cut(s) 294, 383, 387
CfoI GCGC 1 cut(s) 351
Csp6I GTAC 2 cut(s) 161, 558
CviAII CATG 3 cut(s) 46, 136, 197
CviQI GTAC 2 cut(s) 161, 558
DdeI CTNAG 6 cut(s) 37, 255, 297, 371, 396, 528
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
DraI TTTAAA 1 cut(s) 469
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco32I GATATC 2 cut(s) 100, 181
Eco57I CTGAAG 1 cut(s) 464
EcoRI GAATTC 2 cut(s) 13, 22
EcoRII CCWGG 1 cut(s) 351
EcoRV GATATC 2 cut(s) 100, 181
FaeI CATG 3 cut(s) 49, 139, 200
FaiI YATR 6 cut(s) 47, 137, 147, 198, 338, 437
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FatI CATG 3 cut(s) 45, 135, 196
Fnu4HI GCNGC 5 cut(s) 228, 231, 347, 456, 543
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 5 cut(s) 228, 231, 347, 456, 543
FspBI CTAG 2 cut(s) 71, 234
GlaI GCGC 1 cut(s) 350
GluI GCNGC 5 cut(s) 228, 231, 347, 456, 543
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 1 cut(s) 134
HhaI GCGC 1 cut(s) 351
Hin1II CATG 3 cut(s) 49, 139, 200
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HinfI GANTC 3 cut(s) 74, 311, 524
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 4 cut(s) 12, 256, 397, 529
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 1 cut(s) 17
HpyCH4V TGCA 6 cut(s) 4, 227, 251, 441, 449, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 455, 461
HpyF3I CTNAG 6 cut(s) 37, 255, 297, 371, 396, 528
Hsp92II CATG 3 cut(s) 49, 139, 200
HspAI GCGC 1 cut(s) 349
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 564
LpnPI CCDG 6 cut(s) 201, 312, 338, 365, 371, 467
Lsp1109I GCAGC 5 cut(s) 217, 239, 358, 442, 529
LweI GCATC 1 cut(s) 260
MaeI CTAG 2 cut(s) 71, 234
MaeIII GTNAC 1 cut(s) 138
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 5 cut(s) 128, 131, 214, 470, 489
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 569
MluCI AATT 3 cut(s) 13, 22, 549
MlyI GAGTC 2 cut(s) 68, 320
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 3 cut(s) 234, 298, 505
MseI TTAA 3 cut(s) 222, 288, 468
MspA1I CMGCKG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 353
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 455, 461
NdeII GATC 1 cut(s) 67
NlaIII CATG 3 cut(s) 49, 139, 200
NmeAIII GCCGAG 1 cut(s) 435
NmuCI GTSAC 1 cut(s) 138
NspI RCATGY 1 cut(s) 200
PfeI GAWTC 1 cut(s) 524
PkrI GCNGC 5 cut(s) 229, 232, 348, 457, 544
PleI GAGTC 2 cut(s) 68, 319
PpsI GAGTC 2 cut(s) 68, 319
PshBI ATTAAT 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PsuI RGATCY 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 2 cut(s) 162, 559
RsaNI GTAC 2 cut(s) 161, 558
SaqAI TTAA 3 cut(s) 222, 288, 468
SatI GCNGC 5 cut(s) 228, 231, 347, 456, 543
Sau3AI GATC 1 cut(s) 67
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 2 cut(s) 68, 320
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 1 cut(s) 569
SetI ASST 8 cut(s) 9, 83, 112, 232, 245, 265, 298, 544
SfaNI GCATC 1 cut(s) 260
SfcI CTRYAG 1 cut(s) 281
SmiI ATTTAAAT 1 cut(s) 469
Sse9I AATT 3 cut(s) 13, 22, 549
SspMI CTAG 2 cut(s) 71, 234
StyD4I CCNGG 1 cut(s) 351
SwaI ATTTAAAT 1 cut(s) 469
TaqI TCGA 1 cut(s) 183
TasI AATT 3 cut(s) 13, 22, 549
TatI WGTACW 2 cut(s) 160, 557
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 3 cut(s) 222, 288, 468
Tru9I TTAA 3 cut(s) 222, 288, 468
TscAI CASTG 2 cut(s) 514, 522
TseFI GTSAC 1 cut(s) 138
TseI GCWGC 5 cut(s) 227, 230, 346, 455, 542
Tsp45I GTSAC 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 6, 227
TspRI CASTG 2 cut(s) 514, 522
VspI ATTAAT 1 cut(s) 222
XapI RAATTY 2 cut(s) 13, 22
XbaI TCTAGA 1 cut(s) 70
XceI RCATGY 1 cut(s) 200
XspI CTAG 2 cut(s) 71, 234
ZrmI AGTACT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.