Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003994

Physical Location & Seq

Genomic Coordinates Reverse (-)

30818817 .. 30823200

Gene Structure 4384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31920.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGACAGTGCCTTGGTTGTGTCCAGGTGGACCAGTCGACTGTTGCAATACGAGAAACTTTTGGGAAGTTTGATGATGTTCTTGAACCTGGTTGCCATTGTTTGCCTTGGTGCTTGGGTAGTGCAATAGCTGGTCATCTATCGCTACGACTGCAGCAATTGGATGTTCGCTGTGAAACAAAGACCAAGGATAATGTTTTTGTTACTGTGGTTGCTTCTATTCAATATCGAGCTCTGGCTGATAAAGCTTCAGATGCCTTCTACAAGCTCAGTAATACCAGGGGCCAGATCCAGTCTTATGTCTTTGATGTTATCAGGGCAAGTGTTCCAAAACTGGATCTGGATTCAACCTTTGAACAGAAGAATGATATCGCCAAAGCTGTGGAAGAAGAACTTGAAAAGGCCATGTCACATTATGGGTTTGAGATAGTACAGACTTTGATTGTAGATATTGAACCAGATGAGCATGTGAAGAGAGCGATGAATGAGATTAATGCAGCTGCTAGGATGAGGTTGGCTGCTACTGAGAAAGCTGAAGCCGAGAAGATACTACAGATTAAGCGTGCTGAGGGAGAGGCAGAGTCCAAATATCTGTCAGGGCTTGGGATAGCAAGGCAGCGCCAGGCTATTGTGGACGGGCTGAGAGACAGTGTGCTGGCCTTCTCTGAGAATGTACCCGGGACATCATCAAAGGATGTCATGGACATGGTTCTGGTGACCCAGTACTTTGACACAATGAAGGAGATCGGTGCATCTTCAAAGTCCAACTCGGTTTTCATCCCTCACGGACCTGGTGCTGTGAAAGACATTGCTTCACAGATAAGAGATGGTCTCCTCCAAGGAAATTCATCTCGTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

287

Amino Acids

31.39

Weight (kDa)

5.38

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	40 - 213	5.5e-28	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840
fragaria_vesca	FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920
malus_domestica	MD13G1078800.v1.1 MD16G1078400.v1.1
prunus_persica	Prupe.1G268100_v2.0.a1 Prupe.1G268100_v2.0.a1 Prupe.1G268100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0440581
rosa_laevigata	RLG00000006166 RLG00000031225 RLG00000034776
rosa_multiflora	Rmu_sc0008018.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381410
rosa_rugosa	Rorug04G0326800
rosa_samantha	Rh4AG378700 Rh4BG391300 Rh4DG385200 Rh5DG546200
rosa_wichuraiana	Rw4G032520 Rw4G032560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	38
AclWI	GGATC	2 cut(s)	283, 345
AcsI	RAATTY	1 cut(s)	844
AcuI	CTGAAG	2 cut(s)	234, 555
AfaI	GTAC	3 cut(s)	432, 675, 725
AgsI	TTSAA	7 cut(s)	86, 224, 348, 356, 398, 455, 759
AjnI	CCWGG	5 cut(s)	24, 88, 278, 621, 790
AjuI	GAANNNNNNNTTGG	2 cut(s)	758, 790
AluBI	AGCT	7 cut(s)	131, 233, 248, 268, 380, 500, 533
AluI	AGCT	7 cut(s)	131, 233, 248, 268, 380, 500, 533
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	2 cut(s)	639, 836
AlwI	GGATC	2 cut(s)	283, 345
Ama87I	CYCGRG	1 cut(s)	677
AoxI	GGCC	3 cut(s)	283, 402, 657
ApeKI	GCWGC	5 cut(s)	154, 497, 500, 518, 616
ApoI	RAATTY	1 cut(s)	844
AseI	ATTAAT	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	621
AspS9I	GGNCC	3 cut(s)	31, 283, 788
AsuC2I	CCSGG	2 cut(s)	678, 679
AsuHPI	GGTGA	1 cut(s)	727
AvaI	CYCGRG	1 cut(s)	677
AvaII	GGWCC	2 cut(s)	31, 788
BanII	GRGCYC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	5 cut(s)	166, 487, 505, 509, 628
BccI	CCATC	1 cut(s)	821
BciT130I	CCWGG	5 cut(s)	26, 90, 280, 623, 792
BcnI	CCSGG	2 cut(s)	678, 679
BcoDI	GTCTC	2 cut(s)	639, 836
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	2 cut(s)	152, 551
BfoI	RGCGCY	1 cut(s)	622
BisI	GCNGC	5 cut(s)	155, 498, 501, 519, 617
BlsI	GCNGC	5 cut(s)	156, 499, 502, 520, 618
BmcAI	AGTACT	1 cut(s)	725
Bme1390I	CCNGG	7 cut(s)	26, 90, 280, 623, 678, 679, 792
Bme18I	GGWCC	2 cut(s)	31, 788
BmeT110I	CYCGRG	1 cut(s)	677
BmgT120I	GGNCC	3 cut(s)	31, 283, 788
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	7 cut(s)	26, 90, 280, 623, 678, 679, 792
BmrI	ACTGGG	1 cut(s)	715
BmsI	GCATC	2 cut(s)	244, 761
BmuI	ACTGGG	1 cut(s)	715
BplI	GAGNNNNNCTC	2 cut(s)	816, 848
Bpu10I	CCTNAGC	1 cut(s)	567
BpuMI	CCSGG	2 cut(s)	678, 679
BsaI	GGTCTC	1 cut(s)	836
BsaJI	CCNNGG	6 cut(s)	13, 107, 186, 279, 677, 838
Bse1I	ACTGG	4 cut(s)	34, 292, 339, 721
Bse3DI	GCAATG	1 cut(s)	807
BseBI	CCWGG	5 cut(s)	26, 90, 280, 623, 792
BseDI	CCNNGG	6 cut(s)	13, 107, 186, 279, 677, 838
BseGI	GGATG	4 cut(s)	169, 513, 700, 777
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	5 cut(s)	283, 516, 558, 632, 657
BseNI	ACTGG	4 cut(s)	34, 292, 339, 721
BseRI	GAGGAG	1 cut(s)	824
BseXI	GCAGC	5 cut(s)	166, 487, 505, 509, 628
BshFI	GGCC	3 cut(s)	285, 404, 659
BsiHKAI	GWGCWC	1 cut(s)	235
BsiHKCI	CYCGRG	1 cut(s)	677
BsiSI	CCGG	1 cut(s)	678
BslFI	GGGAC	2 cut(s)	18, 694
BsmAI	GTCTC	2 cut(s)	639, 836
BsmFI	GGGAC	2 cut(s)	18, 694
BsnI	GGCC	3 cut(s)	285, 404, 659
Bso31I	GGTCTC	1 cut(s)	836
BsoBI	CYCGRG	1 cut(s)	677
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	3 cut(s)	288, 337, 744
BspANI	GGCC	3 cut(s)	285, 404, 659
BspCNI	CTCAG	5 cut(s)	282, 517, 559, 633, 658
BspLI	GGNNCC	1 cut(s)	284
BspMAI	CTGCAG	1 cut(s)	156
BspPI	GGATC	2 cut(s)	283, 345
BspTNI	GGTCTC	1 cut(s)	836
BsrDI	GCAATG	1 cut(s)	807
BsrI	ACTGG	4 cut(s)	34, 292, 339, 721
BssECI	CCNNGG	6 cut(s)	13, 107, 186, 279, 677, 838
BssMI	GATC	3 cut(s)	288, 337, 744
BssT1I	CCWWGG	4 cut(s)	13, 107, 186, 838
Bst2UI	CCWGG	5 cut(s)	26, 90, 280, 623, 792
Bst4CI	ACNGT	4 cut(s)	9, 43, 208, 650
Bst6I	CTCTTC	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	564, 657
BstDEI	CTNAG	5 cut(s)	269, 525, 567, 641, 666
BstEII	GGTNACC	1 cut(s)	715
BstF5I	GGATG	4 cut(s)	169, 513, 700, 777
BstH2I	RGCGCY	1 cut(s)	622
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	3 cut(s)	291, 340, 747
BstMAI	GTCTC	2 cut(s)	639, 836
BstMBI	GATC	3 cut(s)	288, 337, 744
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 245, 254
BstNI	CCWGG	5 cut(s)	26, 90, 280, 623, 792
BstNSI	RCATGY	1 cut(s)	470
BstPI	GGTNACC	1 cut(s)	715
BstSCI	CCNGG	7 cut(s)	24, 88, 278, 621, 676, 677, 790
BstSFI	CTRYAG	2 cut(s)	152, 551
BstV1I	GCAGC	5 cut(s)	166, 487, 505, 509, 628
BstX2I	RGATCY	2 cut(s)	288, 337
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstYI	RGATCY	2 cut(s)	288, 337
BsuRI	GGCC	3 cut(s)	285, 404, 659
BtgZI	GCGATG	1 cut(s)	494
BtsCI	GGATG	4 cut(s)	169, 513, 700, 777
BtsIMutI	CAGTG	2 cut(s)	14, 655
Cac8I	GCNNGC	2 cut(s)	564, 657
CfoI	GCGC	1 cut(s)	621
Cfr13I	GGNCC	3 cut(s)	31, 283, 788
Cfr9I	CCCGGG	1 cut(s)	677
CsiI	ACCWGGT	2 cut(s)	88, 790
Csp6I	GTAC	3 cut(s)	431, 674, 724
CviAII	CATG	4 cut(s)	406, 467, 700, 706
CviQI	GTAC	3 cut(s)	431, 674, 724
DdeI	CTNAG	5 cut(s)	269, 525, 567, 641, 666
DpnI	GATC	3 cut(s)	290, 339, 746
DpnII	GATC	3 cut(s)	288, 337, 744
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
Ecl136II	GAGCTC	1 cut(s)	233
Eco130I	CCWWGG	4 cut(s)	13, 107, 186, 838
Eco24I	GRGCYC	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	836
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	2 cut(s)	31, 788
Eco53kI	GAGCTC	1 cut(s)	233
Eco57I	CTGAAG	2 cut(s)	234, 555
Eco88I	CYCGRG	1 cut(s)	677
Eco91I	GGTNACC	1 cut(s)	715
EcoICRI	GAGCTC	1 cut(s)	233
EcoO65I	GGTNACC	1 cut(s)	715
EcoRII	CCWGG	5 cut(s)	24, 88, 278, 621, 790
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	4 cut(s)	13, 107, 186, 838
EcoT38I	GRGCYC	1 cut(s)	235
ErhI	CCWWGG	4 cut(s)	13, 107, 186, 838
FaeI	CATG	4 cut(s)	409, 470, 703, 709
FaiI	YATR	6 cut(s)	300, 407, 417, 468, 701, 707
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	2 cut(s)	18, 694
FatI	CATG	4 cut(s)	405, 466, 699, 705
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	5 cut(s)	155, 498, 501, 519, 617
FokI	GGATG	4 cut(s)	176, 520, 707, 764
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	5 cut(s)	155, 498, 501, 519, 617
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	620
GluI	GCNGC	5 cut(s)	155, 498, 501, 519, 617
HaeII	RGCGCY	1 cut(s)	622
HaeIII	GGCC	3 cut(s)	285, 404, 659
HapII	CCGG	1 cut(s)	678
HhaI	GCGC	1 cut(s)	621
Hin1II	CATG	4 cut(s)	409, 470, 703, 709
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	2 cut(s)	344, 581
HpaII	CCGG	1 cut(s)	678
HphI	GGTGA	1 cut(s)	727
Hpy166II	GTNNAC	3 cut(s)	31, 39, 634
Hpy188I	TCNGA	2 cut(s)	253, 667
Hpy188III	TCNNGA	2 cut(s)	83, 341
Hpy8I	GTNNAC	3 cut(s)	31, 39, 634
HpyAV	CCTTC	3 cut(s)	268, 670, 733
HpyCH4III	ACNGT	4 cut(s)	9, 43, 208, 650
HpyCH4V	TGCA	5 cut(s)	47, 125, 154, 497, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 245, 254
HpyF3I	CTNAG	5 cut(s)	269, 525, 567, 641, 666
Hsp92II	CATG	4 cut(s)	409, 470, 703, 709
HspAI	GCGC	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	288, 337, 744
Lsp1109I	GCAGC	5 cut(s)	166, 487, 505, 509, 628
LweI	GCATC	2 cut(s)	244, 761
MabI	ACCWGGT	2 cut(s)	88, 790
MaeI	CTAG	1 cut(s)	504
MaeIII	GTNAC	3 cut(s)	202, 408, 715
MalI	GATC	3 cut(s)	290, 339, 746
MboI	GATC	3 cut(s)	288, 337, 744
MboII	GAAGA	6 cut(s)	373, 398, 401, 484, 556, 747
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	2 cut(s)	288, 337
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	2 cut(s)	158, 844
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	1 cut(s)	789
MnlI	CCTC	5 cut(s)	504, 562, 568, 792, 845
MseI	TTAA	2 cut(s)	492, 558
MslI	CAYNNNNRTG	1 cut(s)	704
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	678
MspR9I	CCNGG	7 cut(s)	26, 90, 280, 623, 678, 679, 792
MunI	CAATTG	1 cut(s)	158
MvaI	CCWGG	5 cut(s)	26, 90, 280, 623, 792
MwoI	GCNNNNNNNGC	3 cut(s)	151, 245, 254
NciI	CCSGG	2 cut(s)	678, 679
NdeII	GATC	3 cut(s)	288, 337, 744
NlaIII	CATG	4 cut(s)	409, 470, 703, 709
NlaIV	GGNNCC	1 cut(s)	284
NmeAIII	GCCGAG	1 cut(s)	565
NmuCI	GTSAC	2 cut(s)	408, 715
NspI	RCATGY	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	5 cut(s)	156, 499, 502, 520, 618
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
PshBI	ATTAAT	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	235
Psp6I	CCWGG	5 cut(s)	24, 88, 278, 621, 790
PspEI	GGTNACC	1 cut(s)	715
PspGI	CCWGG	5 cut(s)	24, 88, 278, 621, 790
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	3 cut(s)	31, 283, 788
PstI	CTGCAG	1 cut(s)	156
PsuI	RGATCY	2 cut(s)	288, 337
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	3 cut(s)	432, 675, 725
RsaNI	GTAC	3 cut(s)	431, 674, 724
RseI	CAYNNNNRTG	1 cut(s)	704
SacI	GAGCTC	1 cut(s)	235
SalI	GTCGAC	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	492, 558
SatI	GCNGC	5 cut(s)	155, 498, 501, 519, 617
Sau3AI	GATC	3 cut(s)	288, 337, 744
Sau96I	GGNCC	3 cut(s)	31, 283, 788
ScaI	AGTACT	1 cut(s)	725
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	7 cut(s)	26, 90, 280, 623, 678, 679, 792
SduI	GDGCHC	1 cut(s)	235
SexAI	ACCWGGT	2 cut(s)	88, 790
SfaNI	GCATC	2 cut(s)	244, 761
SfcI	CTRYAG	2 cut(s)	152, 551
SinI	GGWCC	2 cut(s)	31, 788
SmaI	CCCGGG	1 cut(s)	679
SmiMI	CAYNNNNRTG	1 cut(s)	704
Sse9I	AATT	2 cut(s)	158, 844
SspMI	CTAG	1 cut(s)	504
SstI	GAGCTC	1 cut(s)	235
StyD4I	CCNGG	7 cut(s)	24, 88, 278, 621, 676, 677, 790
StyI	CCWWGG	4 cut(s)	13, 107, 186, 838
TaaI	ACNGT	4 cut(s)	9, 43, 208, 650
TaqI	TCGA	2 cut(s)	38, 229
TasI	AATT	2 cut(s)	158, 844
TatI	WGTACW	2 cut(s)	430, 723
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	2 cut(s)	492, 558
Tru9I	TTAA	2 cut(s)	492, 558
TscAI	CASTG	2 cut(s)	14, 655
TseFI	GTSAC	2 cut(s)	408, 715
TseI	GCWGC	5 cut(s)	154, 497, 500, 518, 616
Tsp45I	GTSAC	2 cut(s)	408, 715
TspDTI	ATGAA	4 cut(s)	497, 752, 766, 837
TspGWI	ACGGA	1 cut(s)	801
TspMI	CCCGGG	1 cut(s)	677
TspRI	CASTG	2 cut(s)	14, 655
VpaK11BI	GGWCC	2 cut(s)	31, 788
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	1 cut(s)	844
XceI	RCATGY	1 cut(s)	470
XmaI	CCCGGG	1 cut(s)	677
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	1 cut(s)	504
ZrmI	AGTACT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.