Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003994

Physical Location & Seq

Genomic Coordinates Reverse (-)

59657952 .. 59661472

Gene Structure 3521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G032560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTTTCATGTTTCATTTGGATTAAGTTGCATTCACAACGAGCGCTATGCCTTTAATCAGAAAATGGGACAGTGCCTTGGTTGTATCCAGGTGGACCAGTCTACTGTTGCAATAAGAGAAACTTTTGGGAAGTTTGATGATGTGCTCGAACCTGGTTGTCATTGTTTGCCTTGGTGTTTGGGTAGCGCAGTAGCTGGTCATCTCTCTCTACGAGTGCAGCAATTGGATGTTCGCTGTGAAACAAAGACCAAGGATAACGTTTTTGTTACTGTGGTTGCTTCTATTCAATACCGAGCTTTAGCTGACAAAGCTTCAGATGCCTTCTACAAGCTCAGCAATACCAGGGGGCAGATCCAGTCTTATGTCTTTGATGTTATTAGGGCAAGTGTTCCAAAGTTGGATCTAGACTCAACCTTTGAACAGAAGAATGATATCGCCAAAGCTGTGGAAGAAGAACTTGAAAAGGCCATGTCACATTATGGGTTTGAGATAGTACAAACATTGATTGTGGATATCGAACCAGATGAGCATGTGAAGAGAGCGATGAATGAGATTAATGCAGCTGCTAGGATGAGGTTGGCTGCATCTGAGAGAGCTGAAGGAGATAAGATACTACAGATTAAGCGAGCTGAGGGAGAGGCAGAGTCCAAATATCTGTCAGGGCTTGGCATAGCAAGGCAGCGCCAGGCTATTGTGGACGGGCTGAGAGACAGCGTGCTGGCTTTCTCTGAGAATGTACCTGGGACATCATCAAAGGATGTCATGGATATGGTTCTGGTGACCCAGTACTTCGATACAATGAAAGAGATCGGTGCATCTTCAAAGTCCAATGCGGTTTTCATCCCACACGGACCTGGTGCTGTGAAAGACATTGCTTCACAGATAAGAGATGGTCTCCTTCAAGGAAATTCAACTCACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

307

Amino Acids

33.9

Weight (kDa)

5.66

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	30 - 203	5.6e-28	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840 AT1G69840
fragaria_vesca	FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920 FvH4_4g31920
malus_domestica	MD13G1078800.v1.1 MD16G1078400.v1.1
prunus_persica	Prupe.1G268100_v2.0.a1 Prupe.1G268100_v2.0.a1 Prupe.1G268100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0440581
rosa_laevigata	RLG00000006166 RLG00000031225 RLG00000034776
rosa_multiflora	Rmu_sc0008018.1_g000002
rosa_roxburghii	Rroxscaffold_5G00381410
rosa_rugosa	Rorug04G0326800
rosa_samantha	Rh4AG378700 Rh4BG391300 Rh4DG385200 Rh5DG546200
rosa_wichuraiana	Rw4G032520 Rw4G032560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	101
AciI	CCGC	1 cut(s)	833
AclI	AACGTT	1 cut(s)	258
AclWI	GGATC	2 cut(s)	346, 408
AcsI	RAATTY	1 cut(s)	907
AcuI	CTGAAG	2 cut(s)	297, 618
AfaI	GTAC	3 cut(s)	495, 738, 788
AfeI	AGCGCT	1 cut(s)	44
AgsI	TTSAA	6 cut(s)	287, 419, 461, 822, 902, 912
AjnI	CCWGG	6 cut(s)	87, 151, 341, 684, 739, 853
AjuI	GAANNNNNNNTTGG	2 cut(s)	821, 853
AluBI	AGCT	9 cut(s)	194, 296, 302, 311, 331, 443, 563, 596, 629
AluI	AGCT	9 cut(s)	194, 296, 302, 311, 331, 443, 563, 596, 629
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	2 cut(s)	702, 899
AlwI	GGATC	2 cut(s)	346, 408
AlwNI	CAGNNNCTG	1 cut(s)	194
Aor51HI	AGCGCT	1 cut(s)	44
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	5 cut(s)	217, 560, 563, 581, 679
ApoI	RAATTY	1 cut(s)	907
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
AseI	ATTAAT	1 cut(s)	555
AspLEI	GCGC	3 cut(s)	45, 188, 684
AspS9I	GGNCC	2 cut(s)	94, 851
AsuHPI	GGTGA	2 cut(s)	790, 908
AvaII	GGWCC	2 cut(s)	94, 851
Bbv12I	GWGCWC	1 cut(s)	147
BbvCI	CCTCAGC	1 cut(s)	630
BbvI	GCAGC	5 cut(s)	229, 550, 568, 572, 691
BccI	CCATC	1 cut(s)	884
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BciT130I	CCWGG	6 cut(s)	89, 153, 343, 686, 741, 855
BciVI	GTATCC	1 cut(s)	95
BcoDI	GTCTC	2 cut(s)	702, 899
BfaI	CTAG	2 cut(s)	404, 567
BfmI	CTRYAG	1 cut(s)	614
BfoI	RGCGCY	2 cut(s)	46, 685
BfuI	GTATCC	1 cut(s)	95
BisI	GCNGC	5 cut(s)	218, 561, 564, 582, 680
BlpI	GCTNAGC	1 cut(s)	332
BlsI	GCNGC	5 cut(s)	219, 562, 565, 583, 681
BmcAI	AGTACT	1 cut(s)	788
Bme1390I	CCNGG	6 cut(s)	89, 153, 343, 686, 741, 855
Bme18I	GGWCC	2 cut(s)	94, 851
BmgT120I	GGNCC	2 cut(s)	94, 851
BmrFI	CCNGG	6 cut(s)	89, 153, 343, 686, 741, 855
BmrI	ACTGGG	1 cut(s)	778
BmsI	GCATC	3 cut(s)	307, 593, 824
BmuI	ACTGGG	1 cut(s)	778
BplI	GAGNNNNNCTC	2 cut(s)	879, 911
Bpu10I	CCTNAGC	1 cut(s)	630
Bpu1102I	GCTNAGC	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	899
BsaJI	CCNNGG	5 cut(s)	76, 170, 249, 342, 740
Bse1I	ACTGG	4 cut(s)	97, 355, 784, 919
Bse3DI	GCAATG	1 cut(s)	870
BseBI	CCWGG	6 cut(s)	89, 153, 343, 686, 741, 855
BseDI	CCNNGG	5 cut(s)	76, 170, 249, 342, 740
BseGI	GGATG	4 cut(s)	232, 576, 763, 840
BseMI	GCAATG	1 cut(s)	870
BseMII	CTCAG	5 cut(s)	346, 579, 621, 695, 720
BseNI	ACTGG	4 cut(s)	97, 355, 784, 919
BseXI	GCAGC	5 cut(s)	229, 550, 568, 572, 691
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	147
BslFI	GGGAC	2 cut(s)	81, 757
BsmAI	GTCTC	2 cut(s)	702, 899
BsmFI	GGGAC	2 cut(s)	81, 757
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	467
Bso31I	GGTCTC	1 cut(s)	899
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	3 cut(s)	351, 400, 807
Bsp1720I	GCTNAGC	1 cut(s)	332
BspACI	CCGC	1 cut(s)	833
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	5 cut(s)	345, 580, 622, 696, 721
BspPI	GGATC	2 cut(s)	346, 408
BspTNI	GGTCTC	1 cut(s)	899
BsrDI	GCAATG	1 cut(s)	870
BsrI	ACTGG	4 cut(s)	97, 355, 784, 919
BssECI	CCNNGG	5 cut(s)	76, 170, 249, 342, 740
BssMI	GATC	3 cut(s)	351, 400, 807
BssT1I	CCWWGG	3 cut(s)	76, 170, 249
Bst2UI	CCWGG	6 cut(s)	89, 153, 343, 686, 741, 855
Bst4CI	ACNGT	3 cut(s)	72, 106, 271
Bst6I	CTCTTC	1 cut(s)	530
BstC8I	GCNNGC	3 cut(s)	627, 716, 720
BstDEI	CTNAG	5 cut(s)	332, 588, 630, 704, 729
BstEII	GGTNACC	1 cut(s)	778
BstF5I	GGATG	4 cut(s)	232, 576, 763, 840
BstH2I	RGCGCY	2 cut(s)	46, 685
BstHHI	GCGC	3 cut(s)	45, 188, 684
BstKTI	GATC	3 cut(s)	354, 403, 810
BstMAI	GTCTC	2 cut(s)	702, 899
BstMBI	GATC	3 cut(s)	351, 400, 807
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 317
BstNI	CCWGG	6 cut(s)	89, 153, 343, 686, 741, 855
BstNSI	RCATGY	1 cut(s)	533
BstPI	GGTNACC	1 cut(s)	778
BstSCI	CCNGG	6 cut(s)	87, 151, 341, 684, 739, 853
BstSFI	CTRYAG	1 cut(s)	614
BstV1I	GCAGC	5 cut(s)	229, 550, 568, 572, 691
BstX2I	RGATCY	2 cut(s)	351, 400
BstXI	CCANNNNNNTGG	1 cut(s)	445
BstYI	RGATCY	2 cut(s)	351, 400
BsuI	GTATCC	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	467
BtgZI	GCGATG	1 cut(s)	557
BtsCI	GGATG	4 cut(s)	232, 576, 763, 840
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	3 cut(s)	627, 716, 720
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	3 cut(s)	45, 188, 684
Cfr13I	GGNCC	2 cut(s)	94, 851
CsiI	ACCWGGT	2 cut(s)	151, 853
Csp6I	GTAC	3 cut(s)	494, 737, 787
CviAII	CATG	4 cut(s)	8, 469, 530, 763
CviQI	GTAC	3 cut(s)	494, 737, 787
DdeI	CTNAG	5 cut(s)	332, 588, 630, 704, 729
DpnI	GATC	3 cut(s)	353, 402, 809
DpnII	GATC	3 cut(s)	351, 400, 807
Eam1104I	CTCTTC	1 cut(s)	530
EarI	CTCTTC	1 cut(s)	530
Eco130I	CCWWGG	3 cut(s)	76, 170, 249
Eco31I	GGTCTC	1 cut(s)	899
Eco32I	GATATC	2 cut(s)	433, 514
Eco47I	GGWCC	2 cut(s)	94, 851
Eco47III	AGCGCT	1 cut(s)	44
Eco57I	CTGAAG	2 cut(s)	297, 618
Eco91I	GGTNACC	1 cut(s)	778
EcoO65I	GGTNACC	1 cut(s)	778
EcoRII	CCWGG	6 cut(s)	87, 151, 341, 684, 739, 853
EcoRV	GATATC	2 cut(s)	433, 514
EcoT14I	CCWWGG	3 cut(s)	76, 170, 249
ErhI	CCWWGG	3 cut(s)	76, 170, 249
FaeI	CATG	4 cut(s)	11, 472, 533, 766
FaiI	YATR	9 cut(s)	9, 48, 363, 470, 480, 531, 671, 764, 770
FalI	AAGNNNNNCTT	4 cut(s)	106, 138, 441, 473
FaqI	GGGAC	2 cut(s)	81, 757
FatI	CATG	4 cut(s)	7, 468, 529, 762
FblI	GTMKAC	1 cut(s)	101
Fnu4HI	GCNGC	5 cut(s)	218, 561, 564, 582, 680
FokI	GGATG	4 cut(s)	239, 583, 770, 827
Fsp4HI	GCNGC	5 cut(s)	218, 561, 564, 582, 680
FspBI	CTAG	2 cut(s)	404, 567
GlaI	GCGC	3 cut(s)	44, 187, 683
GluI	GCNGC	5 cut(s)	218, 561, 564, 582, 680
HaeII	RGCGCY	2 cut(s)	46, 685
HaeIII	GGCC	1 cut(s)	467
HhaI	GCGC	3 cut(s)	45, 188, 684
Hin1II	CATG	4 cut(s)	11, 472, 533, 766
Hin6I	GCGC	3 cut(s)	43, 186, 682
HinP1I	GCGC	3 cut(s)	43, 186, 682
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	2 cut(s)	407, 644
HphI	GGTGA	2 cut(s)	790, 908
Hpy166II	GTNNAC	3 cut(s)	94, 102, 697
Hpy188I	TCNGA	4 cut(s)	60, 316, 589, 730
Hpy188III	TCNNGA	1 cut(s)	404
Hpy8I	GTNNAC	3 cut(s)	94, 102, 697
HpyAV	CCTTC	3 cut(s)	331, 593, 908
HpyCH4III	ACNGT	3 cut(s)	72, 106, 271
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	6 cut(s)	30, 110, 217, 560, 584, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 317
HpyF3I	CTNAG	5 cut(s)	332, 588, 630, 704, 729
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	4 cut(s)	11, 472, 533, 766
HspAI	GCGC	3 cut(s)	43, 186, 682
Kzo9I	GATC	3 cut(s)	351, 400, 807
Lsp1109I	GCAGC	5 cut(s)	229, 550, 568, 572, 691
LweI	GCATC	3 cut(s)	307, 593, 824
MabI	ACCWGGT	2 cut(s)	151, 853
MaeI	CTAG	2 cut(s)	404, 567
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	3 cut(s)	265, 471, 778
MalI	GATC	3 cut(s)	353, 402, 809
MboI	GATC	3 cut(s)	351, 400, 807
MboII	GAAGA	5 cut(s)	436, 461, 464, 547, 810
MfeI	CAATTG	1 cut(s)	221
MflI	RGATCY	2 cut(s)	351, 400
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	2 cut(s)	221, 907
MlyI	GAGTC	2 cut(s)	401, 653
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	3 cut(s)	567, 625, 631
MseI	TTAA	4 cut(s)	23, 54, 555, 621
MslI	CAYNNNNRTG	1 cut(s)	767
MspA1I	CMGCKG	1 cut(s)	563
MspR9I	CCNGG	6 cut(s)	89, 153, 343, 686, 741, 855
MunI	CAATTG	1 cut(s)	221
Mva1269I	GAATGC	1 cut(s)	30
MvaI	CCWGG	6 cut(s)	89, 153, 343, 686, 741, 855
MwoI	GCNNNNNNNGC	2 cut(s)	308, 317
NdeII	GATC	3 cut(s)	351, 400, 807
NlaIII	CATG	4 cut(s)	11, 472, 533, 766
NmuCI	GTSAC	2 cut(s)	471, 778
NspI	RCATGY	1 cut(s)	533
PctI	GAATGC	1 cut(s)	30
PkrI	GCNGC	5 cut(s)	219, 562, 565, 583, 681
PleI	GAGTC	2 cut(s)	401, 652
PpsI	GAGTC	2 cut(s)	401, 652
PshBI	ATTAAT	1 cut(s)	555
Psp1406I	AACGTT	1 cut(s)	258
Psp6I	CCWGG	6 cut(s)	87, 151, 341, 684, 739, 853
PspEI	GGTNACC	1 cut(s)	778
PspGI	CCWGG	6 cut(s)	87, 151, 341, 684, 739, 853
PspPI	GGNCC	2 cut(s)	94, 851
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	2 cut(s)	351, 400
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	3 cut(s)	495, 738, 788
RsaNI	GTAC	3 cut(s)	494, 737, 787
RseI	CAYNNNNRTG	1 cut(s)	767
SaqAI	TTAA	4 cut(s)	23, 54, 555, 621
SatI	GCNGC	5 cut(s)	218, 561, 564, 582, 680
Sau3AI	GATC	3 cut(s)	351, 400, 807
Sau96I	GGNCC	2 cut(s)	94, 851
ScaI	AGTACT	1 cut(s)	788
SchI	GAGTC	2 cut(s)	401, 653
ScrFI	CCNGG	6 cut(s)	89, 153, 343, 686, 741, 855
SduI	GDGCHC	1 cut(s)	147
SexAI	ACCWGGT	2 cut(s)	151, 853
SfaNI	GCATC	3 cut(s)	307, 593, 824
SfcI	CTRYAG	1 cut(s)	614
SinI	GGWCC	2 cut(s)	94, 851
SmiMI	CAYNNNNRTG	1 cut(s)	767
Sse9I	AATT	2 cut(s)	221, 907
SsiI	CCGC	1 cut(s)	833
SspMI	CTAG	2 cut(s)	404, 567
StyD4I	CCNGG	6 cut(s)	87, 151, 341, 684, 739, 853
StyI	CCWWGG	3 cut(s)	76, 170, 249
TaaI	ACNGT	3 cut(s)	72, 106, 271
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	3 cut(s)	147, 516, 792
TasI	AATT	2 cut(s)	221, 907
TatI	WGTACW	2 cut(s)	493, 786
Tru1I	TTAA	4 cut(s)	23, 54, 555, 621
Tru9I	TTAA	4 cut(s)	23, 54, 555, 621
TscAI	CASTG	1 cut(s)	77
TseFI	GTSAC	2 cut(s)	471, 778
TseI	GCWGC	5 cut(s)	217, 560, 563, 581, 679
Tsp45I	GTSAC	2 cut(s)	471, 778
TspDTI	ATGAA	3 cut(s)	560, 815, 829
TspGWI	ACGGA	1 cut(s)	864
TspRI	CASTG	1 cut(s)	77
VpaK11BI	GGWCC	2 cut(s)	94, 851
VspI	ATTAAT	1 cut(s)	555
XapI	RAATTY	1 cut(s)	907
XbaI	TCTAGA	1 cut(s)	403
XceI	RCATGY	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	101
XspI	CTAG	2 cut(s)	404, 567
ZrmI	AGTACT	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.