AT1G69980

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
26355874 .. 26357731
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69980.1

Sequence Viewer

Length: 618 bp
ATGGCTTCTCAGAGTTCTTCACTTTTTCTGGTTATCTTCTTCATCTTCATCTACGCTTCTTCAATTCCATCCTCTATTCTCGCCAGAGCACATGAACATGACGGAGATGAAGAGATCAGAAGCGTTGGGCGTAGATTCCTTCTAGGTTTCAAAGAAACTCCAAAAGGAAGTAATATCACCTTCGCTTGTTCTCCTTCAGGTCCTTGTGTCTCTTGCAATTCCTCCGAAAAGAGAAAAGAGAAGTATCGTTGCAGTGAAACTGGTTATCGTATTCCTTTCAAATGTAAAGAGGTTAGAGAAGAAGTGGATGCACATAAGAAAAATGGAGAAGAAGAAACACAAAATGATCAATCGAATAACAATGACGAAGAAGCGAAAACAAGGAATCTGTTGGATGATTCATCACCGGCGACGAAAGTGAAGTCTCAGTCTTACAAAACTTATAGAAGCTGTGTGCCATCTGCAGACGAAGAGAAGTTATCAGTTCTTGGTTTTGAGTCGATTATGCTAGGACTGTTTCTGTTAAGCGGAGCTGCTATTTACATCAGAAAGAGACAGACGGTACCGATGCTTGGGGTATCATCAAGTGGAAGATTGCAAGGCAATTCTCGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.84

Weight (kDa)

8.49

Isoelectric Point (pI)

64.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69980
fragaria_vesca FvH4_4g35380 FvH4_4g35380
malus_domestica MD16G1083100.v1.1
prunus_persica Prupe.1G262900_v2.0.a1 Prupe.1G262900_v2.0.a1
pyrus_communis pycom16g07200
rosa_chinensis RchiOBHm_Chr4g0444991
rosa_laevigata RLG00000005779
rosa_multiflora Rmu_ssc0000285.1_g000002
rosa_roxburghii Rroxscaffold_5G00385500
rosa_rugosa Rorug04G0357100 Rorug04G0357200
rosa_samantha Rh4AG419000 Rh4BG430700 Rh4DG426600
rosa_wichuraiana Rw4G035870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 562
AccB1I GGYRCC 1 cut(s) 562
AciI CCGC 1 cut(s) 528
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 564
AfiI CCNNNNNNNGG 1 cut(s) 572
AgsI TTSAA 3 cut(s) 63, 151, 280
AluBI AGCT 2 cut(s) 450, 533
AluI AGCT 2 cut(s) 450, 533
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 3 cut(s) 214, 429, 547
ApeKI GCWGC 1 cut(s) 533
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
Asp718I GGTACC 1 cut(s) 562
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 2 cut(s) 169, 396
AvaII GGWCC 1 cut(s) 200
BanI GGYRCC 1 cut(s) 562
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 520
BccI CCATC 2 cut(s) 76, 466
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 3 cut(s) 214, 429, 547
BfaI CTAG 2 cut(s) 143, 509
BfmI CTRYAG 1 cut(s) 462
BisI GCNGC 1 cut(s) 534
BlsI GCNGC 1 cut(s) 535
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 564
BmsI GCATC 2 cut(s) 298, 558
Bsc4I CCNNNNNNNGG 1 cut(s) 572
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 1 cut(s) 265
BseGI GGATG 3 cut(s) 68, 313, 400
BseLI CCNNNNNNNGG 1 cut(s) 572
BseMII CTCAG 2 cut(s) 23, 440
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 520
BshNI GGYRCC 1 cut(s) 562
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 572
BsmAI GTCTC 3 cut(s) 214, 429, 547
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 114, 346
BspACI CCGC 1 cut(s) 528
BspCNI CTCAG 2 cut(s) 22, 439
BspLI GGNNCC 1 cut(s) 564
BspMAI CTGCAG 1 cut(s) 466
BspT107I GGYRCC 1 cut(s) 562
BsrFI RCCGGY 1 cut(s) 406
BsrI ACTGG 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 406
BssMI GATC 2 cut(s) 114, 346
Bst4CI ACNGT 2 cut(s) 516, 562
Bst6I CTCTTC 2 cut(s) 105, 465
BstDEI CTNAG 2 cut(s) 9, 426
BstF5I GGATG 3 cut(s) 68, 313, 400
BstKTI GATC 2 cut(s) 117, 349
BstMAI GTCTC 3 cut(s) 214, 429, 547
BstMBI GATC 2 cut(s) 114, 346
BstSFI CTRYAG 1 cut(s) 462
BstV1I GCAGC 1 cut(s) 520
BtsCI GGATG 3 cut(s) 68, 313, 400
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 563
CviAII CATG 2 cut(s) 92, 98
CviJI RGCY 3 cut(s) 5, 450, 533
CviKI_1 RGCY 3 cut(s) 5, 450, 533
CviQI GTAC 1 cut(s) 563
DdeI CTNAG 2 cut(s) 9, 426
DpnI GATC 2 cut(s) 116, 348
DpnII GATC 2 cut(s) 114, 346
Eam1104I CTCTTC 2 cut(s) 105, 465
EarI CTCTTC 2 cut(s) 105, 465
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 200
FaeI CATG 2 cut(s) 95, 101
FaiI YATR 5 cut(s) 93, 99, 315, 444, 506
FatI CATG 2 cut(s) 91, 97
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 534
FokI GGATG 3 cut(s) 55, 320, 407
Fsp4HI GCNGC 1 cut(s) 534
FspBI CTAG 2 cut(s) 143, 509
GluI GCNGC 1 cut(s) 534
HapII CCGG 1 cut(s) 407
Hin1II CATG 2 cut(s) 95, 101
HinfI GANTC 4 cut(s) 135, 385, 398, 497
HpaII CCGG 1 cut(s) 407
HphI GGTGA 2 cut(s) 169, 396
Hpy188I TCNGA 4 cut(s) 12, 119, 226, 548
Hpy99I CGWCG 1 cut(s) 415
HpyAV CCTTC 3 cut(s) 149, 190, 204
HpyCH4III ACNGT 2 cut(s) 516, 562
HpyCH4V TGCA 5 cut(s) 216, 252, 311, 464, 598
HpyF3I CTNAG 2 cut(s) 9, 426
Hsp92II CATG 2 cut(s) 95, 101
KpnI GGTACC 1 cut(s) 566
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 2 cut(s) 114, 346
LmnI GCTCC 1 cut(s) 530
LpnPI CCDG 5 cut(s) 14, 97, 183, 246, 420
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 2 cut(s) 298, 558
MaeI CTAG 2 cut(s) 143, 509
MalI GATC 2 cut(s) 116, 348
MboI GATC 2 cut(s) 114, 346
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 3 cut(s) 63, 217, 604
MlyI GAGTC 1 cut(s) 506
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 3 cut(s) 82, 232, 283
MseI TTAA 1 cut(s) 524
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 1 cut(s) 407
NdeII GATC 2 cut(s) 114, 346
NlaIII CATG 2 cut(s) 95, 101
NlaIV GGNNCC 1 cut(s) 564
PfeI GAWTC 3 cut(s) 135, 385, 398
PkrI GCNGC 1 cut(s) 535
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PpuMI RGGWCCY 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 564
PspPI GGNCC 1 cut(s) 200
PspPPI RGGWCCY 1 cut(s) 200
PstI CTGCAG 1 cut(s) 466
RsaI GTAC 1 cut(s) 564
RsaNI GTAC 1 cut(s) 563
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 1 cut(s) 534
Sau3AI GATC 2 cut(s) 114, 346
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 506
SduI GDGCHC 1 cut(s) 91
SetI ASST 6 cut(s) 148, 182, 202, 294, 452, 535
SfaNI GCATC 2 cut(s) 298, 558
SfcI CTRYAG 1 cut(s) 462
SgrAI CRCCGGYG 1 cut(s) 406
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 3 cut(s) 63, 217, 604
SsiI CCGC 1 cut(s) 528
SspMI CTAG 2 cut(s) 143, 509
TaaI ACNGT 2 cut(s) 516, 562
TaqI TCGA 2 cut(s) 353, 500
TasI AATT 3 cut(s) 63, 217, 604
TfiI GAWTC 3 cut(s) 135, 385, 398
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TscAI CASTG 1 cut(s) 259
TseI GCWGC 1 cut(s) 533
TspDTI ATGAA 5 cut(s) 31, 37, 108, 123, 390
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 200
XspI CTAG 2 cut(s) 143, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.