Rw4G035870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0014338
Physical Location & Seq
Forward (+)
62734425 .. 62735939
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G035870.1

Sequence Viewer

Length: 624 bp
ATGCCTTCAGATTCACCATTCTTTCTCCTCCTCTTCTTCTTCTCCACAGCCTTCGCTCTGCTCTCAGTAGGCTCCGCCACAATCGAAGATGGTGAAGGCGAAGGGATTGGAAGTAGAACGCTTCTGGGTCTCAAAGAAACCCCTTATGGAACTAACTCGACCTTTGAATGCTCTCCTAATGGTCCCTGTGTTCCTTGCCAATACTCTGAAAAGAACAATGAGAAGTATCGCTGCAGTGAGACTGGCTATCGCATCCCTTTGAAATGTGTGGAAATTAAGCAAGGGTTAAATGATGCAAAGGCAAAGATAGGCCCTAAGAAGAGTAGATCAACTCTGGAAGTTTCCCACAACATTTCAGAATTGCATAATGCGAAAGAGCTCGGTACTCTCTTAAAGCGTAGAAGTTTACTGGATGATTCTTCTACAGAAGAGAATGGCAAGCAGGCTTACATTACTTACAGAAGCTGTATACCACCAGTTAATGAAGAGAAGTTGTCAGTGCTTGGTTTTGAGGTGATTGTCCTGTGTTTGCTAGTCATTAGTGGTTCTATTGTATACTTCAAAAAAAGGCAGACAGCTACAGTGGCAGGATTTTCCCGAATTCAGAGCAACGCAAGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.79

Weight (kDa)

8.43

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69980
fragaria_vesca FvH4_4g35380 FvH4_4g35380
malus_domestica MD16G1083100.v1.1
prunus_persica Prupe.1G262900_v2.0.a1 Prupe.1G262900_v2.0.a1
pyrus_communis pycom16g07200
rosa_chinensis RchiOBHm_Chr4g0444991
rosa_laevigata RLG00000005779
rosa_multiflora Rmu_ssc0000285.1_g000002
rosa_roxburghii Rroxscaffold_5G00385500
rosa_rugosa Rorug04G0357100 Rorug04G0357200
rosa_samantha Rh4AG419000 Rh4BG430700 Rh4DG426600
rosa_wichuraiana Rw4G035870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 469, 555
AciI CCGC 1 cut(s) 75
AcsI RAATTY 1 cut(s) 600
AfaI GTAC 1 cut(s) 385
AgsI TTSAA 3 cut(s) 167, 262, 562
AluBI AGCT 3 cut(s) 379, 465, 578
AluI AGCT 3 cut(s) 379, 465, 578
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 2 cut(s) 134, 233
AlwNI CAGNNNCTG 1 cut(s) 465
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 600
AspS9I GGNCC 2 cut(s) 182, 311
AsuHPI GGTGA 3 cut(s) 6, 104, 526
AvaII GGWCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 218
BccI CCATC 1 cut(s) 83
BcoDI GTCTC 2 cut(s) 134, 233
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 3 cut(s) 232, 423, 579
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 2 cut(s) 182, 311
BmiI GGNNCC 2 cut(s) 73, 184
BmsI GCATC 2 cut(s) 261, 283
BsaI GGTCTC 1 cut(s) 134
Bse1I ACTGG 3 cut(s) 247, 414, 476
BseGI GGATG 2 cut(s) 252, 418
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 3 cut(s) 247, 414, 476
BseRI GAGGAG 2 cut(s) 17, 20
BseXI GCAGC 1 cut(s) 218
BshFI GGCC 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 381
BslFI GGGAC 1 cut(s) 168
BsmAI GTCTC 2 cut(s) 134, 233
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 1 cut(s) 312
Bso31I GGTCTC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 1 cut(s) 326
BspACI CCGC 1 cut(s) 75
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 77
BspLI GGNNCC 2 cut(s) 73, 184
BspMAI CTGCAG 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 134
BsrI ACTGG 3 cut(s) 247, 414, 476
BssMI GATC 1 cut(s) 326
BssNAI GTATAC 2 cut(s) 470, 556
Bst1107I GTATAC 2 cut(s) 470, 556
Bst4CI ACNGT 1 cut(s) 583
Bst6I CTCTTC 4 cut(s) 38, 314, 423, 480
BstC8I GCNNGC 2 cut(s) 440, 444
BstDEI CTNAG 2 cut(s) 64, 315
BstF5I GGATG 2 cut(s) 252, 418
BstKTI GATC 1 cut(s) 329
BstMAI GTCTC 2 cut(s) 134, 233
BstMBI GATC 1 cut(s) 326
BstMWI GCNNNNNNNGC 1 cut(s) 584
BstSFI CTRYAG 3 cut(s) 232, 423, 579
BstV1I GCAGC 1 cut(s) 218
BstZ17I GTATAC 2 cut(s) 470, 556
BsuRI GGCC 1 cut(s) 312
BtsCI GGATG 2 cut(s) 252, 418
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 3 cut(s) 241, 504, 588
Cac8I GCNNGC 2 cut(s) 440, 444
CaiI CAGNNNCTG 1 cut(s) 465
Cfr13I GGNCC 2 cut(s) 182, 311
Csp6I GTAC 1 cut(s) 384
CviJI RGCY 8 cut(s) 50, 72, 246, 312, 379, 446, 465, 578
CviKI_1 RGCY 8 cut(s) 50, 72, 246, 312, 379, 446, 465, 578
CviQI GTAC 1 cut(s) 384
DdeI CTNAG 2 cut(s) 64, 315
DpnI GATC 1 cut(s) 328
DpnII GATC 1 cut(s) 326
Eam1104I CTCTTC 4 cut(s) 38, 314, 423, 480
EarI CTCTTC 4 cut(s) 38, 314, 423, 480
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 182
Eco53kI GAGCTC 1 cut(s) 379
EcoICRI GAGCTC 1 cut(s) 379
EcoO109I RGGNCCY 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 600
EcoT38I GRGCYC 1 cut(s) 381
FaiI YATR 4 cut(s) 147, 366, 470, 556
FaqI GGGAC 1 cut(s) 168
FblI GTMKAC 2 cut(s) 469, 555
Fnu4HI GCNGC 1 cut(s) 232
FokI GGATG 2 cut(s) 239, 425
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 1 cut(s) 533
GluI GCNGC 1 cut(s) 232
HaeIII GGCC 1 cut(s) 312
HinfI GANTC 2 cut(s) 11, 416
HphI GGTGA 3 cut(s) 6, 104, 526
Hpy166II GTNNAC 3 cut(s) 407, 470, 556
Hpy188I TCNGA 4 cut(s) 10, 208, 358, 606
Hpy188III TCNNGA 2 cut(s) 335, 597
Hpy8I GTNNAC 3 cut(s) 407, 470, 556
HpyAV CCTTC 4 cut(s) 15, 61, 89, 95
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4V TGCA 3 cut(s) 234, 296, 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 584
HpyF3I CTNAG 2 cut(s) 64, 315
Kzo9I GATC 1 cut(s) 326
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 9 cut(s) 110, 199, 228, 320, 395, 428, 489, 536, 573
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 2 cut(s) 261, 283
MaeI CTAG 1 cut(s) 533
MalI GATC 1 cut(s) 328
MboI GATC 1 cut(s) 326
MboII GAAGA 8 cut(s) 25, 28, 31, 98, 331, 411, 440, 497
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 3 cut(s) 273, 359, 600
MnlI CCTC 3 cut(s) 38, 41, 505
MseI TTAA 5 cut(s) 276, 287, 392, 480, 622
Mva1269I GAATGC 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 584
NdeII GATC 1 cut(s) 326
NlaIV GGNNCC 2 cut(s) 73, 184
PctI GAATGC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 11, 416
PkrI GCNGC 1 cut(s) 233
Psp124BI GAGCTC 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 73, 184
PspPI GGNCC 2 cut(s) 182, 311
PstI CTGCAG 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 465
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
SacI GAGCTC 1 cut(s) 381
SaqAI TTAA 5 cut(s) 276, 287, 392, 480, 622
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 1 cut(s) 326
Sau96I GGNCC 2 cut(s) 182, 311
SduI GDGCHC 1 cut(s) 381
SetI ASST 6 cut(s) 164, 381, 467, 516, 580, 620
SfaNI GCATC 2 cut(s) 261, 283
SfcI CTRYAG 3 cut(s) 232, 423, 579
SinI GGWCC 1 cut(s) 182
Sse9I AATT 3 cut(s) 273, 359, 600
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 533
SstI GAGCTC 1 cut(s) 381
TaaI ACNGT 1 cut(s) 583
TaqI TCGA 2 cut(s) 84, 158
TasI AATT 3 cut(s) 273, 359, 600
TfiI GAWTC 2 cut(s) 11, 416
Tru1I TTAA 5 cut(s) 276, 287, 392, 480, 622
Tru9I TTAA 5 cut(s) 276, 287, 392, 480, 622
TscAI CASTG 3 cut(s) 241, 504, 588
TseI GCWGC 1 cut(s) 231
TspDTI ATGAA 1 cut(s) 498
TspRI CASTG 3 cut(s) 241, 504, 588
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 1 cut(s) 600
XmiI GTMKAC 2 cut(s) 469, 555
XspI CTAG 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.