pycom16g07200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0014338
Physical Location & Seq
Reverse (-)
4691731 .. 4693913
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g07200.4

Sequence Viewer

Length: 798 bp
ATGGGTGGGCTTTACAAAAGCCCATATACCAGTCTGCGAAATACTGTGAACACGGGGGCCAATTTTATAATAGCAAAGAACTTCAGGGGAATCCAGGGAAATAAAAAAAATTATGAAGCTCCCGATTTAGCAGAAGAGAATAGAAGAGAAAGAAAGAGGCGAAGAGAGAGGGAGAGAGCAATTATGCCTTCAGATTCATCACTCTTTCTCCTACTGCTCTTCTCCATAGCCTTCAATCTGCTCTCAGTAGCCCACGCCACGATCGGAAGCGAAGAAATCGGAGGAGGGATTGGGCGGAGGGCGCTGCTGAGTCTGAAAGAAACCCCTCACGGAAGCAACGCCACCTACGAATGCTCTCCTGCTGGCCCTTGCGTTCCTTGCCTTTACCCCGAAAAGAAAGACGAGAAATATCGCTGCAGTGAGACTGGGTATCGCATCCCTTTGAAATGTGTTGAAATGAAACTTGGCTCAAAGGAAGCAAAAGAGAAAGGTGCTCAAAAGAGTCGATCTGCTCTGGAGATCTTCCACAACGTTGAAGAATCGCATAATGCAGAGGACCTCGGTGCTTACGTAAAGCATAGAAGTTTACTTGATGATTCATCCACACAAGAGCCACAGGCTTACATTACATATAGAAGCTGTATACCAGCAGTTAATGAAGAGAAGTTGTCGGTGCTTGGTTTCGAGGTGATCGTGCTGTTCTTGTTGCTCATCAGCGGTTCATTAGTATACTTCAGAAGAAAGCAGACTACTTCAACTGCAGGATTTGTACGAATTCAGAACAACTCGAGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.71

Weight (kDa)

9.23

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69980
fragaria_vesca FvH4_4g35380 FvH4_4g35380
malus_domestica MD16G1083100.v1.1
prunus_persica Prupe.1G262900_v2.0.a1 Prupe.1G262900_v2.0.a1
pyrus_communis pycom16g07200
rosa_chinensis RchiOBHm_Chr4g0444991
rosa_laevigata RLG00000005779
rosa_multiflora Rmu_ssc0000285.1_g000002
rosa_roxburghii Rroxscaffold_5G00385500
rosa_rugosa Rorug04G0357100 Rorug04G0357200
rosa_samantha Rh4AG419000 Rh4BG430700 Rh4DG426600
rosa_wichuraiana Rw4G035870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 68
AccI GTMKAC 2 cut(s) 643, 729
AciI CCGC 2 cut(s) 295, 717
AclI AACGTT 1 cut(s) 531
AcsI RAATTY 1 cut(s) 774
AcuI CTGAAG 3 cut(s) 67, 174, 718
AfaI GTAC 1 cut(s) 771
AgsI TTSAA 5 cut(s) 235, 445, 455, 536, 756
AjnI CCWGG 1 cut(s) 93
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
AluBI AGCT 2 cut(s) 119, 639
AluI AGCT 2 cut(s) 119, 639
Alw21I GWGCWC 1 cut(s) 496
Alw26I GTCTC 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 787
AoxI GGCC 2 cut(s) 57, 364
ApeKI GCWGC 2 cut(s) 304, 414
ApoI RAATTY 1 cut(s) 774
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 3 cut(s) 57, 365, 556
AsuHPI GGTGA 1 cut(s) 700
AvaI CYCGRG 1 cut(s) 787
AvaII GGWCC 1 cut(s) 556
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 2 cut(s) 291, 401
BciT130I CCWGG 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 416
BfmI CTRYAG 2 cut(s) 415, 759
BfoI RGCGCY 1 cut(s) 305
BglII AGATCT 1 cut(s) 519
BisI GCNGC 2 cut(s) 305, 415
BlsI GCNGC 2 cut(s) 306, 416
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 556
BmeT110I CYCGRG 1 cut(s) 787
BmgT120I GGNCC 3 cut(s) 57, 365, 556
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 95
BmrI ACTGGG 1 cut(s) 435
BmsI GCATC 1 cut(s) 444
BmuI ACTGGG 1 cut(s) 435
BpmI CTGGAG 1 cut(s) 536
BsaAI YACGTR 1 cut(s) 571
BsaJI CCNNGG 2 cut(s) 94, 559
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bse1I ACTGG 2 cut(s) 30, 430
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 94, 559
BseGI GGATG 2 cut(s) 435, 599
BseMII CTCAG 2 cut(s) 258, 299
BseNI ACTGG 2 cut(s) 30, 430
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 2 cut(s) 291, 401
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 2 cut(s) 59, 366
BsiEI CGRYCG 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 496
BsiHKCI CYCGRG 1 cut(s) 787
BsmAI GTCTC 1 cut(s) 416
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 2 cut(s) 59, 366
BsoBI CYCGRG 1 cut(s) 787
Bsp1286I GDGCHC 1 cut(s) 496
Bsp143I GATC 4 cut(s) 261, 506, 519, 690
BspACI CCGC 2 cut(s) 295, 717
BspANI GGCC 2 cut(s) 59, 366
BspCNI CTCAG 2 cut(s) 257, 300
BspLI GGNNCC 1 cut(s) 58
BspMAI CTGCAG 2 cut(s) 419, 763
BspQI GCTCTTC 1 cut(s) 224
BsrI ACTGG 2 cut(s) 30, 430
BssECI CCNNGG 2 cut(s) 94, 559
BssMI GATC 4 cut(s) 261, 506, 519, 690
BssNAI GTATAC 2 cut(s) 644, 730
Bst1107I GTATAC 2 cut(s) 644, 730
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 5 cut(s) 129, 139, 157, 224, 654
BstBAI YACGTR 1 cut(s) 571
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 2 cut(s) 244, 308
BstF5I GGATG 2 cut(s) 435, 599
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 4 cut(s) 264, 509, 522, 693
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 4 cut(s) 261, 506, 519, 690
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 2 cut(s) 301, 378
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 2 cut(s) 415, 759
BstSNI TACGTA 1 cut(s) 571
BstV1I GCAGC 2 cut(s) 291, 401
BstX2I RGATCY 1 cut(s) 519
BstYI RGATCY 1 cut(s) 519
BstZ17I GTATAC 2 cut(s) 644, 730
BsuRI GGCC 2 cut(s) 59, 366
BtsCI GGATG 2 cut(s) 435, 599
BtsI GCAGTG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 424
Cac8I GCNNGC 1 cut(s) 364
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 3 cut(s) 57, 365, 556
Csp6I GTAC 1 cut(s) 770
CviQI GTAC 1 cut(s) 770
DdeI CTNAG 2 cut(s) 244, 308
DpnI GATC 4 cut(s) 263, 508, 521, 692
DpnII GATC 4 cut(s) 261, 506, 519, 690
Eam1104I CTCTTC 5 cut(s) 129, 139, 157, 224, 654
EarI CTCTTC 5 cut(s) 129, 139, 157, 224, 654
EciI GGCGGA 1 cut(s) 310
Eco105I TACGTA 1 cut(s) 571
Eco47I GGWCC 1 cut(s) 556
Eco57I CTGAAG 3 cut(s) 67, 174, 718
Eco88I CYCGRG 1 cut(s) 787
EcoO109I RGGNCCY 1 cut(s) 556
EcoRI GAATTC 1 cut(s) 774
EcoRII CCWGG 1 cut(s) 93
FblI GTMKAC 2 cut(s) 643, 729
Fnu4HI GCNGC 2 cut(s) 305, 415
FokI GGATG 2 cut(s) 422, 586
Fsp4HI GCNGC 2 cut(s) 305, 415
GlaI GCGC 1 cut(s) 303
GluI GCNGC 2 cut(s) 305, 415
GsuI CTGGAG 1 cut(s) 536
HaeII RGCGCY 1 cut(s) 305
HaeIII GGCC 2 cut(s) 59, 366
HhaI GCGC 1 cut(s) 304
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 6 cut(s) 90, 194, 310, 502, 539, 596
HphI GGTGA 1 cut(s) 700
Hpy166II GTNNAC 4 cut(s) 49, 587, 644, 730
Hpy188I TCNGA 6 cut(s) 193, 266, 281, 315, 737, 780
Hpy188III TCNNGA 2 cut(s) 122, 515
Hpy8I GTNNAC 4 cut(s) 49, 587, 644, 730
HpyAV CCTTC 2 cut(s) 198, 241
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 2 cut(s) 531, 570
HpyCH4V TGCA 3 cut(s) 417, 551, 761
HpyF10VI GCNNNNNNNGC 2 cut(s) 301, 378
HpyF3I CTNAG 2 cut(s) 244, 308
HpySE526I ACGT 2 cut(s) 531, 570
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 4 cut(s) 261, 506, 519, 690
LguI GCTCTTC 1 cut(s) 224
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 2 cut(s) 291, 401
LweI GCATC 1 cut(s) 444
MaeII ACGT 2 cut(s) 531, 570
MalI GATC 4 cut(s) 263, 508, 521, 692
MboI GATC 4 cut(s) 261, 506, 519, 690
MboII GAAGA 9 cut(s) 146, 156, 174, 211, 284, 514, 548, 671, 750
MflI RGATCY 1 cut(s) 519
MhlI GDGCHC 1 cut(s) 496
MluCI AATT 4 cut(s) 61, 109, 180, 774
MlyI GAGTC 2 cut(s) 319, 511
MseI TTAA 2 cut(s) 654, 796
MspA1I CMGCKG 1 cut(s) 717
MspR9I CCNGG 1 cut(s) 95
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 301, 378
NdeII GATC 4 cut(s) 261, 506, 519, 690
NlaIV GGNNCC 1 cut(s) 58
PaeR7I CTCGAG 1 cut(s) 787
PciSI GCTCTTC 1 cut(s) 224
PcsI WCGNNNNNNNCGW 3 cut(s) 345, 567, 690
PctI GAATGC 1 cut(s) 356
PfeI GAWTC 4 cut(s) 90, 194, 539, 596
PkrI GCNGC 2 cut(s) 306, 416
Ple19I CGATCG 1 cut(s) 264
PleI GAGTC 2 cut(s) 318, 510
PpsI GAGTC 2 cut(s) 318, 510
Ppu21I YACGTR 1 cut(s) 571
PpuMI RGGWCCY 1 cut(s) 556
PsiI TTATAA 1 cut(s) 68
Psp1406I AACGTT 1 cut(s) 531
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 3 cut(s) 57, 365, 556
PspPPI RGGWCCY 1 cut(s) 556
PspXI VCTCGAGB 1 cut(s) 787
PstI CTGCAG 2 cut(s) 419, 763
PsuI RGATCY 1 cut(s) 519
PvuI CGATCG 1 cut(s) 264
RsaI GTAC 1 cut(s) 771
RsaNI GTAC 1 cut(s) 770
SapI GCTCTTC 1 cut(s) 224
SaqAI TTAA 2 cut(s) 654, 796
SatI GCNGC 2 cut(s) 305, 415
Sau3AI GATC 4 cut(s) 261, 506, 519, 690
Sau96I GGNCC 3 cut(s) 57, 365, 556
SchI GAGTC 2 cut(s) 319, 511
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 496
SetI ASST 9 cut(s) 121, 347, 493, 534, 561, 573, 641, 690, 794
SfaNI GCATC 1 cut(s) 444
SfcI CTRYAG 2 cut(s) 415, 759
Sfr274I CTCGAG 1 cut(s) 787
SinI GGWCC 1 cut(s) 556
SlaI CTCGAG 1 cut(s) 787
SmlI CTYRAG 1 cut(s) 787
SmoI CTYRAG 1 cut(s) 787
SnaBI TACGTA 1 cut(s) 571
Sse9I AATT 4 cut(s) 61, 109, 180, 774
SsiI CCGC 2 cut(s) 295, 717
StyD4I CCNGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 2 cut(s) 534, 573
TaqI TCGA 3 cut(s) 505, 684, 788
TasI AATT 4 cut(s) 61, 109, 180, 774
TfiI GAWTC 4 cut(s) 90, 194, 539, 596
Tru1I TTAA 2 cut(s) 654, 796
Tru9I TTAA 2 cut(s) 654, 796
TscAI CASTG 1 cut(s) 424
TseI GCWGC 2 cut(s) 304, 414
TspDTI ATGAA 6 cut(s) 129, 186, 473, 588, 672, 711
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 1 cut(s) 774
XhoI CTCGAG 1 cut(s) 787
XmiI GTMKAC 2 cut(s) 643, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.