Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014338

Physical Location & Seq

Genomic Coordinates Reverse (-)

1672400 .. 1673924

Gene Structure 1525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005779

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCTTCAGATTCACCATTCTTTCTCCTCCTCCTCCTTCTCCTCTTCTTCTTCTTCTTCTCCACAGCCTTCGCTCTGCTCTCAGTAGGCTCCGCCACAATCGAAGATGGTGAAGGCGAAAGGATTGGAAGTAGAACGCTTCTGGGTCTCAAAGAAACCCCTCATGGAACTAACTCGACCTTTGAATGCTCTCCTAATGGTCCCTGTGTTCCTTGCCAATACTCTGAAAAGAACAATGAGAAGTTTCGCTGCAGTGAGACTGGCTATCGCATCCCTTTGAAATGTGTGGAAATTAAGCAAGGGTTAAAGGATGCAAAGGCAAAGATAGGCCCTAAGAAGAGTAGATCTACTCTGGAAGTTTCCCACAACATTTCAGAATTGCATAATGCGGAAGAGCTCGGTACTCTCTTACAGCGTAGAAGTTTACTGGATGATTCTTCTACAGAAGAGAATGGCAAGCAGGCTTACATTACTTACAGAAGCTGTATACCACCAGTTAATGAAGAGAAGTTGTCAGTGCTTGGTTTTGAGGTGATTGTCCTGTGTTTGCTAGTCATTAGTGGTTCTATTGTATACTTCAAAAAAAGGCAGACAGCTACAATGGCAGGATTTTCCCGACTTCAGAGCAACGCAAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.64

Weight (kDa)

8.13

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69980
fragaria_vesca	FvH4_4g35380 FvH4_4g35380
malus_domestica	MD16G1083100.v1.1
prunus_persica	Prupe.1G262900_v2.0.a1 Prupe.1G262900_v2.0.a1
pyrus_communis	pycom16g07200
rosa_chinensis	RchiOBHm_Chr4g0444991
rosa_laevigata	RLG00000005779
rosa_multiflora	Rmu_ssc0000285.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385500
rosa_rugosa	Rorug04G0357100 Rorug04G0357200
rosa_samantha	Rh4AG419000 Rh4BG430700 Rh4DG426600
rosa_wichuraiana	Rw4G035870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	487, 573
AciI	CCGC	2 cut(s)	93, 389
AcuI	CTGAAG	1 cut(s)	605
AfaI	GTAC	1 cut(s)	403
AgsI	TTSAA	3 cut(s)	185, 280, 580
AluBI	AGCT	3 cut(s)	397, 483, 596
AluI	AGCT	3 cut(s)	397, 483, 596
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	2 cut(s)	152, 251
AlwNI	CAGNNNCTG	1 cut(s)	483
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	200, 329
AsuHPI	GGTGA	3 cut(s)	6, 122, 544
AvaII	GGWCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	152, 251
BfaI	CTAG	1 cut(s)	551
BfmI	CTRYAG	2 cut(s)	250, 441
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	200, 329
BmiI	GGNNCC	2 cut(s)	91, 202
BmsI	GCATC	2 cut(s)	279, 301
BsaI	GGTCTC	1 cut(s)	152
Bse1I	ACTGG	3 cut(s)	265, 432, 494
BseGI	GGATG	3 cut(s)	270, 316, 436
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	3 cut(s)	265, 432, 494
BseRI	GAGGAG	4 cut(s)	17, 20, 23, 32
BseXI	GCAGC	1 cut(s)	236
BshFI	GGCC	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	186
BsmAI	GTCTC	2 cut(s)	152, 251
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	330
Bso31I	GGTCTC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	344
BspACI	CCGC	2 cut(s)	93, 389
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	1 cut(s)	95
BspLI	GGNNCC	2 cut(s)	91, 202
BspMAI	CTGCAG	1 cut(s)	254
BspQI	GCTCTTC	1 cut(s)	387
BspTNI	GGTCTC	1 cut(s)	152
BsrI	ACTGG	3 cut(s)	265, 432, 494
BssMI	GATC	1 cut(s)	344
BssNAI	GTATAC	2 cut(s)	488, 574
Bst1107I	GTATAC	2 cut(s)	488, 574
Bst6I	CTCTTC	5 cut(s)	50, 332, 387, 441, 498
BstC8I	GCNNGC	2 cut(s)	458, 462
BstDEI	CTNAG	2 cut(s)	82, 333
BstF5I	GGATG	3 cut(s)	270, 316, 436
BstKTI	GATC	1 cut(s)	347
BstMAI	GTCTC	2 cut(s)	152, 251
BstMBI	GATC	1 cut(s)	344
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstSFI	CTRYAG	2 cut(s)	250, 441
BstV1I	GCAGC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BstZ17I	GTATAC	2 cut(s)	488, 574
BsuRI	GGCC	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	270, 316, 436
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	259, 522
Cac8I	GCNNGC	2 cut(s)	458, 462
CaiI	CAGNNNCTG	1 cut(s)	483
Cfr13I	GGNCC	2 cut(s)	200, 329
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	8 cut(s)	68, 90, 264, 330, 397, 464, 483, 596
CviKI_1	RGCY	8 cut(s)	68, 90, 264, 330, 397, 464, 483, 596
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	2 cut(s)	82, 333
DpnI	GATC	1 cut(s)	346
DpnII	GATC	1 cut(s)	344
Eam1104I	CTCTTC	5 cut(s)	50, 332, 387, 441, 498
EarI	CTCTTC	5 cut(s)	50, 332, 387, 441, 498
EciI	GGCGGA	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	200
Eco53kI	GAGCTC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	605
EcoICRI	GAGCTC	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	399
FaeI	CATG	1 cut(s)	167
FaiI	YATR	4 cut(s)	165, 384, 488, 574
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	1 cut(s)	163
FblI	GTMKAC	2 cut(s)	487, 573
Fnu4HI	GCNGC	1 cut(s)	250
FokI	GGATG	3 cut(s)	257, 323, 443
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	1 cut(s)	250
FspBI	CTAG	1 cut(s)	551
GluI	GCNGC	1 cut(s)	250
HaeIII	GGCC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	167
HinfI	GANTC	2 cut(s)	11, 434
HphI	GGTGA	3 cut(s)	6, 122, 544
Hpy166II	GTNNAC	3 cut(s)	425, 488, 574
Hpy188I	TCNGA	4 cut(s)	10, 226, 376, 624
Hpy188III	TCNNGA	2 cut(s)	353, 615
Hpy8I	GTNNAC	3 cut(s)	425, 488, 574
HpyAV	CCTTC	4 cut(s)	15, 47, 79, 107
HpyCH4V	TGCA	3 cut(s)	252, 314, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	2 cut(s)	82, 333
Hsp92II	CATG	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	344
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	9 cut(s)	128, 217, 246, 338, 413, 446, 507, 554, 591
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	2 cut(s)	279, 301
MaeI	CTAG	1 cut(s)	551
MalI	GATC	1 cut(s)	346
MboI	GATC	1 cut(s)	344
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	2 cut(s)	291, 377
MnlI	CCTC	6 cut(s)	38, 41, 44, 53, 171, 523
MseI	TTAA	4 cut(s)	294, 305, 498, 640
Mva1269I	GAATGC	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	602
NdeII	GATC	1 cut(s)	344
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	91, 202
PciSI	GCTCTTC	1 cut(s)	387
PctI	GAATGC	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	11, 434
PkrI	GCNGC	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	399
PspN4I	GGNNCC	2 cut(s)	91, 202
PspPI	GGNCC	2 cut(s)	200, 329
PstI	CTGCAG	1 cut(s)	254
PstNI	CAGNNNCTG	1 cut(s)	483
PsuI	RGATCY	1 cut(s)	344
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
SacI	GAGCTC	1 cut(s)	399
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	4 cut(s)	294, 305, 498, 640
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	1 cut(s)	344
Sau96I	GGNCC	2 cut(s)	200, 329
SduI	GDGCHC	1 cut(s)	399
SetI	ASST	6 cut(s)	182, 399, 485, 534, 598, 638
SfaNI	GCATC	2 cut(s)	279, 301
SfcI	CTRYAG	2 cut(s)	250, 441
SinI	GGWCC	1 cut(s)	200
Sse9I	AATT	2 cut(s)	291, 377
SsiI	CCGC	2 cut(s)	93, 389
SspMI	CTAG	1 cut(s)	551
SstI	GAGCTC	1 cut(s)	399
TaqI	TCGA	2 cut(s)	102, 176
TasI	AATT	2 cut(s)	291, 377
TfiI	GAWTC	2 cut(s)	11, 434
Tru1I	TTAA	4 cut(s)	294, 305, 498, 640
Tru9I	TTAA	4 cut(s)	294, 305, 498, 640
TscAI	CASTG	2 cut(s)	259, 522
TseI	GCWGC	1 cut(s)	249
TspDTI	ATGAA	1 cut(s)	516
TspRI	CASTG	2 cut(s)	259, 522
VpaK11BI	GGWCC	1 cut(s)	200
XmiI	GTMKAC	2 cut(s)	487, 573
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.