Prupe.1G262900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014338
Physical Location & Seq
Forward (+)
27134567 .. 27136547
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G262900.2

Sequence Viewer

Length: 624 bp
ATGCCTCCAGATTCATCACTCTTTCTCTTGCTTTTCTTCTTCGTAGCCTTCGCTCTGCTCTCAGTAGGCCACGCCACAATCCAAGGCGATGAAAGCGAAGGGATTGGGCGCAGAGCGCTGCTGAGTCTAAAAGAAACCCCTCGCGGAAGTAACACTACCTTCGAATGCTCTCCAGCTGGTCCTTGCGTTCCTTGCCTTTACTCTGAGAAGAAGGATGAGAAATATCGCTGCAGTGAGACCGGCTATCGCATCCCTTTGAAATGTGTGGAAACTAAACGTAGTTTGAAGGATGAAAAAGCAAAAGGTTCTCAAAAGAGTCGATCTACGCTGGAGATCTATCACAACGATGCAGAATTGCATAATGCGGAAGAACTCGGCACTTCTGTAAAGCATAGAAGTTTACTTGATGATTCAGCCACACTAGAGGATGGACCACAGGCTTACATTACTTACAGAAGCTGTATACCAGCAGTTAGTGAAGAGAAGCTGTCAGTGCTTGGTTTCGAGATGATTGTGCTGTTCTTCTTACTCATCAGCGGTTCGGTTGTATACTTCAGAAGAAAGCAGACTGTTTCCATGACGGGCTTCGGAGCAGGGCGAATTCAGAGCAACTCTAGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.99

Weight (kDa)

7.6

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014338)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69980
fragaria_vesca FvH4_4g35380 FvH4_4g35380
malus_domestica MD16G1083100.v1.1
prunus_persica Prupe.1G262900_v2.0.a1 Prupe.1G262900_v2.0.a1
pyrus_communis pycom16g07200
rosa_chinensis RchiOBHm_Chr4g0444991
rosa_laevigata RLG00000005779
rosa_multiflora Rmu_ssc0000285.1_g000002
rosa_roxburghii Rroxscaffold_5G00385500
rosa_rugosa Rorug04G0357100 Rorug04G0357200
rosa_samantha Rh4AG419000 Rh4BG430700 Rh4DG426600
rosa_wichuraiana Rw4G035870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 463, 549
AccII CGCG 1 cut(s) 144
AciI CCGC 3 cut(s) 144, 365, 537
AcsI RAATTY 1 cut(s) 600
AcuI CTGAAG 1 cut(s) 538
AfeI AGCGCT 1 cut(s) 117
AgsI TTSAA 2 cut(s) 259, 286
AluBI AGCT 3 cut(s) 176, 459, 487
AluI AGCT 3 cut(s) 176, 459, 487
Alw26I GTCTC 1 cut(s) 230
AlwNI CAGNNNCTG 1 cut(s) 459
Aor51HI AGCGCT 1 cut(s) 117
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 2 cut(s) 118, 228
ApoI RAATTY 1 cut(s) 600
AspLEI GCGC 2 cut(s) 111, 118
AspS9I GGNCC 2 cut(s) 179, 431
AsuII TTCGAA 1 cut(s) 162
AvaII GGWCC 2 cut(s) 179, 431
BarI GAAGNNNNNNTAC 2 cut(s) 139, 171
BbvI GCAGC 2 cut(s) 105, 215
BccI CCATC 1 cut(s) 422
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 2 cut(s) 422, 615
BfmI CTRYAG 1 cut(s) 229
BfoI RGCGCY 1 cut(s) 119
BglII AGATCT 1 cut(s) 333
BisI GCNGC 2 cut(s) 119, 229
BlsI GCNGC 2 cut(s) 120, 230
Bme18I GGWCC 2 cut(s) 179, 431
BmgT120I GGNCC 2 cut(s) 179, 431
BmsI GCATC 2 cut(s) 258, 337
BpmI CTGGAG 2 cut(s) 156, 350
Bpu14I TTCGAA 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 82
Bse118I RCCGGY 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 4 cut(s) 220, 249, 295, 433
BseMII CTCAG 3 cut(s) 75, 113, 195
BseXI GCAGC 2 cut(s) 105, 215
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 1 cut(s) 69
BsiSI CCGG 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 230
Bsp119I TTCGAA 1 cut(s) 162
Bsp143I GATC 2 cut(s) 320, 333
BspACI CCGC 3 cut(s) 144, 365, 537
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 3 cut(s) 74, 114, 196
BspFNI CGCG 1 cut(s) 144
BspMAI CTGCAG 1 cut(s) 233
BspT104I TTCGAA 1 cut(s) 162
BspTNI GGTCTC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 2 cut(s) 320, 333
BssNAI GTATAC 2 cut(s) 464, 550
BssT1I CCWWGG 1 cut(s) 82
Bst1107I GTATAC 2 cut(s) 464, 550
Bst4CI ACNGT 1 cut(s) 571
Bst6I CTCTTC 1 cut(s) 474
BstBI TTCGAA 1 cut(s) 162
BstDEI CTNAG 3 cut(s) 61, 122, 204
BstF5I GGATG 4 cut(s) 220, 249, 295, 433
BstFNI CGCG 1 cut(s) 144
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 2 cut(s) 111, 118
BstKTI GATC 2 cut(s) 323, 336
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 2 cut(s) 320, 333
BstMWI GCNNNNNNNGC 4 cut(s) 93, 115, 192, 493
BstSFI CTRYAG 1 cut(s) 229
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 105, 215
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
BstZ17I GTATAC 2 cut(s) 464, 550
BsuRI GGCC 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 4 cut(s) 220, 249, 295, 433
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 238, 498
CaiI CAGNNNCTG 1 cut(s) 459
CfoI GCGC 2 cut(s) 111, 118
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 2 cut(s) 179, 431
CviAII CATG 1 cut(s) 577
CviJI RGCY 9 cut(s) 47, 69, 176, 243, 416, 440, 459, 487, 585
CviKI_1 RGCY 9 cut(s) 47, 69, 176, 243, 416, 440, 459, 487, 585
DdeI CTNAG 3 cut(s) 61, 122, 204
DpnI GATC 2 cut(s) 322, 335
DpnII GATC 2 cut(s) 320, 333
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 230
Eco47I GGWCC 2 cut(s) 179, 431
Eco47III AGCGCT 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 538
EcoRI GAATTC 1 cut(s) 600
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 1 cut(s) 580
FaiI YATR 5 cut(s) 360, 393, 464, 550, 578
FatI CATG 1 cut(s) 576
FblI GTMKAC 2 cut(s) 463, 549
Fnu4HI GCNGC 2 cut(s) 119, 229
FokI GGATG 4 cut(s) 227, 236, 302, 440
Fsp4HI GCNGC 2 cut(s) 119, 229
FspBI CTAG 2 cut(s) 422, 615
GlaI GCGC 2 cut(s) 110, 117
GluI GCNGC 2 cut(s) 119, 229
GsuI CTGGAG 2 cut(s) 156, 350
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 1 cut(s) 69
HapII CCGG 1 cut(s) 240
HhaI GCGC 2 cut(s) 111, 118
Hin1II CATG 1 cut(s) 580
Hin6I GCGC 2 cut(s) 109, 116
HinP1I GCGC 2 cut(s) 109, 116
HinfI GANTC 4 cut(s) 11, 124, 316, 410
HpaII CCGG 1 cut(s) 240
Hpy166II GTNNAC 3 cut(s) 401, 464, 550
Hpy188I TCNGA 4 cut(s) 205, 557, 590, 606
Hpy188III TCNNGA 2 cut(s) 8, 505
Hpy8I GTNNAC 3 cut(s) 401, 464, 550
HpyAV CCTTC 5 cut(s) 58, 92, 169, 205, 280
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 231, 350, 358
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 115, 192, 493
HpyF3I CTNAG 3 cut(s) 61, 122, 204
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 1 cut(s) 580
HspAI GCGC 2 cut(s) 109, 116
Kzo9I GATC 2 cut(s) 320, 333
LmnI GCTCC 1 cut(s) 590
LpnPI CCDG 8 cut(s) 21, 162, 186, 253, 314, 422, 480, 579
Lsp1109I GCAGC 2 cut(s) 105, 215
LweI GCATC 2 cut(s) 258, 337
MaeI CTAG 2 cut(s) 422, 615
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 1 cut(s) 149
MalI GATC 2 cut(s) 322, 335
MboI GATC 2 cut(s) 320, 333
MboII GAAGA 7 cut(s) 28, 31, 220, 380, 491, 514, 570
MflI RGATCY 1 cut(s) 333
MluCI AATT 2 cut(s) 353, 600
MlyI GAGTC 2 cut(s) 133, 325
MnlI CCTC 3 cut(s) 15, 150, 418
MseI TTAA 1 cut(s) 622
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 2 cut(s) 176, 537
MspI CCGG 1 cut(s) 240
Mva1269I GAATGC 1 cut(s) 170
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 4 cut(s) 93, 115, 192, 493
NdeII GATC 2 cut(s) 320, 333
NlaIII CATG 1 cut(s) 580
NmeAIII GCCGAG 1 cut(s) 354
NspV TTCGAA 1 cut(s) 162
PctI GAATGC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 11, 410
PkrI GCNGC 2 cut(s) 120, 230
PleI GAGTC 2 cut(s) 132, 324
PpsI GAGTC 2 cut(s) 132, 324
PspPI GGNCC 2 cut(s) 179, 431
PstI CTGCAG 1 cut(s) 233
PstNI CAGNNNCTG 1 cut(s) 459
PsuI RGATCY 1 cut(s) 333
PvuII CAGCTG 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 1 cut(s) 622
SatI GCNGC 2 cut(s) 119, 229
Sau3AI GATC 2 cut(s) 320, 333
Sau96I GGNCC 2 cut(s) 179, 431
SchI GAGTC 2 cut(s) 133, 325
SetI ASST 7 cut(s) 161, 178, 280, 307, 461, 489, 620
SfaNI GCATC 2 cut(s) 258, 337
SfcI CTRYAG 1 cut(s) 229
SfuI TTCGAA 1 cut(s) 162
SinI GGWCC 2 cut(s) 179, 431
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 2 cut(s) 353, 600
SsiI CCGC 3 cut(s) 144, 365, 537
SspMI CTAG 2 cut(s) 422, 615
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 571
TaiI ACGT 1 cut(s) 280
TaqI TCGA 3 cut(s) 162, 319, 504
TasI AATT 2 cut(s) 353, 600
TfiI GAWTC 2 cut(s) 11, 410
Tru1I TTAA 1 cut(s) 622
Tru9I TTAA 1 cut(s) 622
TscAI CASTG 2 cut(s) 238, 498
TseI GCWGC 2 cut(s) 118, 228
TspDTI ATGAA 2 cut(s) 105, 306
TspRI CASTG 2 cut(s) 238, 498
VpaK11BI GGWCC 2 cut(s) 179, 431
XapI RAATTY 1 cut(s) 600
XmiI GTMKAC 2 cut(s) 463, 549
XspI CTAG 2 cut(s) 422, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.